Wall clock time and date at job start Sat Apr 11 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.46297 * 114.00296 * 2 1 4 4 C 1.46846 * 111.00430 * 119.99508 * 3 2 1 5 5 C 1.53038 * 109.52629 * 185.84036 * 4 3 2 6 6 C 1.53115 * 109.27826 * 300.82790 * 5 4 3 7 7 N 1.46502 * 109.52217 * 177.55952 * 6 5 4 8 8 C 1.34782 * 120.00166 * 155.12438 * 7 6 5 9 9 O 1.21350 * 119.99528 * 359.97438 * 8 7 6 10 10 C 1.49446 * 120.00084 * 179.97438 * 8 7 6 11 11 O 1.21356 * 119.99803 * 353.37756 * 10 8 7 12 12 N 1.34768 * 120.00057 * 173.37736 * 10 8 7 13 13 C 1.46923 * 120.63140 * 353.06161 * 12 10 8 14 14 C 1.53197 * 108.77603 * 126.41596 * 13 12 10 15 15 C 1.53036 * 109.34037 * 54.62030 * 14 13 12 16 16 C 1.53043 * 109.53781 * 298.68543 * 15 14 13 17 17 H 1.09000 * 109.49772 * 301.34791 * 16 15 14 18 18 C 1.50699 * 109.49861 * 181.28187 * 16 15 14 19 19 H 1.08009 * 119.99826 * 0.06421 * 18 16 15 20 20 C 1.37874 * 120.00391 * 180.34183 * 18 16 15 21 21 N 1.31511 * 119.99935 * 359.72505 * 20 18 16 22 22 Si 1.86803 * 120.00371 * 179.72468 * 20 18 16 23 23 H 1.48502 * 109.47059 * 89.99815 * 22 20 18 24 24 H 1.48498 * 109.47106 * 209.99770 * 22 20 18 25 25 H 1.48506 * 109.46912 * 330.00086 * 22 20 18 26 26 C 1.46927 * 120.63303 * 173.08900 * 12 10 8 27 27 C 1.53122 * 109.21812 * 57.61931 * 6 5 4 28 28 C 1.46843 * 111.00013 * 244.21314 * 3 2 1 29 29 H 1.08999 * 109.47374 * 60.00584 * 1 2 3 30 30 H 1.09003 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47340 * 299.99765 * 1 2 3 32 32 H 1.09006 * 109.45738 * 65.82610 * 4 3 2 33 33 H 1.09003 * 109.46320 * 305.86244 * 4 3 2 34 34 H 1.08994 * 109.50188 * 180.88019 * 5 4 3 35 35 H 1.09000 * 109.53227 * 60.78404 * 5 4 3 36 36 H 1.09002 * 109.51907 * 297.68075 * 6 5 4 37 37 H 0.96996 * 120.00059 * 335.12061 * 7 6 5 38 38 H 1.08998 * 109.59171 * 246.19792 * 13 12 10 39 39 H 1.09003 * 109.58922 * 6.48999 * 13 12 10 40 40 H 1.08995 * 109.50150 * 174.58993 * 14 13 12 41 41 H 1.09009 * 109.49617 * 294.68452 * 14 13 12 42 42 H 1.08997 * 109.49188 * 178.64856 * 15 14 13 43 43 H 1.09001 * 109.43006 * 58.68768 * 15 14 13 44 44 H 0.97000 * 120.00590 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.59192 * 113.79627 * 26 12 10 46 46 H 1.08998 * 109.70190 * 353.44355 * 26 12 10 47 47 H 1.08997 * 109.50287 * 62.31654 * 27 6 5 48 48 H 1.08998 * 109.50555 * 182.43752 * 27 6 5 49 49 H 1.09001 * 109.46270 * 294.16892 * 28 3 2 50 50 H 1.08998 * 109.46794 * 54.14298 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.8643 1.5385 1.1873 5 6 3.3508 2.9889 1.2288 6 6 4.1495 3.2907 -0.0422 7 7 4.5685 4.6945 -0.0353 8 6 5.6548 5.0771 -0.7355 9 8 6.2860 4.2585 -1.3712 10 6 6.0819 6.5092 -0.7289 11 8 5.3861 7.3474 -0.1940 12 7 7.2397 6.8698 -1.3169 13 6 8.1651 5.8527 -1.8343 14 6 8.4766 6.1698 -3.3004 15 6 8.9957 7.6053 -3.4092 16 6 7.9186 8.5774 -2.9225 17 1 7.0167 8.4507 -3.5214 18 6 8.4189 9.9923 -3.0595 19 1 9.4061 10.1800 -3.4553 20 6 7.6186 11.0468 -2.6743 21 7 6.4166 10.8183 -2.1923 22 14 8.2418 12.8004 -2.8370 23 1 7.8752 13.3339 -4.1735 24 1 7.6265 13.6443 -1.7813 25 1 9.7190 12.8167 -2.6856 26 6 7.6008 8.2876 -1.4521 27 6 3.2683 3.0257 -1.2661 28 6 2.7829 1.5746 -1.2344 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.7229 0.8685 1.1428 33 1 2.2830 1.3246 2.0842 34 1 3.9871 3.1344 2.1017 35 1 2.4934 3.6594 1.2876 36 1 5.0292 2.6482 -0.0807 37 1 4.0642 5.3487 0.4732 38 1 9.0872 5.8682 -1.2533 39 1 7.7036 4.8679 -1.7614 40 1 9.2356 5.4795 -3.6685 41 1 7.5696 6.0652 -3.8959 42 1 9.2409 7.8255 -4.4482 43 1 9.8890 7.7154 -2.7943 44 1 5.8534 11.5602 -1.9216 45 1 8.4769 8.5016 -0.8399 46 1 6.7677 8.9115 -1.1285 47 1 2.4092 3.6963 -1.2480 48 1 3.8458 3.1976 -2.1744 49 1 3.6420 0.9045 -1.2676 50 1 2.1427 1.3870 -2.0963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329100423.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:37 Heat of formation + Delta-G solvation = -54.849502 kcal Electronic energy + Delta-G solvation = -30499.340922 eV Core-core repulsion = 26335.885778 eV Total energy + Delta-G solvation = -4163.455144 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70469 -39.24023 -38.06038 -36.88575 -36.42717 -34.26376 -33.20939 -31.73870 -31.34688 -30.38835 -29.74361 -26.68579 -25.84679 -25.01196 -23.82126 -23.56030 -22.05251 -21.77768 -20.58129 -19.95626 -18.76196 -17.70187 -17.26119 -16.73214 -16.25434 -15.83244 -15.69580 -15.61684 -15.22524 -14.86486 -14.59147 -14.48704 -14.22023 -13.97022 -13.78216 -13.62812 -13.44417 -13.31395 -12.82574 -12.71433 -12.63008 -12.58923 -12.11155 -11.87128 -11.70846 -11.61998 -11.35151 -11.30359 -11.00113 -10.98672 -10.71545 -10.46013 -10.31213 -10.28545 -10.06822 -9.89752 -9.33159 -9.21751 -9.12776 -9.09449 -8.53184 -8.42374 -7.83858 -6.03141 -4.11228 1.75673 2.14599 2.64879 3.29538 3.36775 3.39315 3.61399 3.90359 4.20625 4.38326 4.40867 4.56491 4.68362 4.69642 4.83342 4.92099 5.14736 5.16152 5.16526 5.25000 5.27510 5.30220 5.40484 5.41731 5.47167 5.63094 5.65680 5.68579 5.73224 5.83470 5.94405 6.09091 6.25356 6.36895 6.38593 6.59080 6.61130 6.63912 6.74155 6.85827 6.98665 7.03677 7.16906 7.22069 7.58280 7.81930 7.94243 7.97246 8.15161 8.34200 8.56134 8.92839 9.54351 11.02507 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.002275 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.881782 B =12305.183181 C =12852.018845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.265 6.265 3 N -0.366 5.366 4 C 0.048 3.952 5 C -0.122 4.122 6 C 0.139 3.861 7 N -0.699 5.699 8 C 0.514 3.486 9 O -0.514 6.514 10 C 0.494 3.506 11 O -0.524 6.524 12 N -0.566 5.566 13 C 0.050 3.950 14 C -0.127 4.127 15 C -0.113 4.113 16 C 0.041 3.959 17 H 0.029 0.971 18 C -0.518 4.518 19 H 0.059 0.941 20 C 0.062 3.938 21 N -0.883 5.883 22 Si 0.894 3.106 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 C 0.108 3.892 27 C -0.126 4.126 28 C 0.046 3.954 29 H 0.044 0.956 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.414 0.586 38 H 0.054 0.946 39 H 0.144 0.856 40 H 0.058 0.942 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.264 0.736 45 H 0.048 0.952 46 H 0.124 0.876 47 H 0.080 0.920 48 H 0.086 0.914 49 H 0.049 0.951 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.453 -20.308 6.311 22.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.270 6.270 3 N -0.136 5.136 4 C -0.081 4.081 5 C -0.160 4.160 6 C 0.034 3.966 7 N -0.352 5.352 8 C 0.297 3.703 9 O -0.391 6.391 10 C 0.275 3.725 11 O -0.402 6.402 12 N -0.298 5.298 13 C -0.072 4.072 14 C -0.165 4.165 15 C -0.151 4.151 16 C 0.021 3.979 17 H 0.047 0.953 18 C -0.557 4.557 19 H 0.078 0.922 20 C -0.141 4.141 21 N -0.521 5.521 22 Si 0.722 3.278 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.012 4.012 27 C -0.165 4.165 28 C -0.082 4.082 29 H 0.063 0.937 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.251 0.749 38 H 0.072 0.928 39 H 0.160 0.840 40 H 0.077 0.923 41 H 0.076 0.924 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.141 0.859 47 H 0.098 0.902 48 H 0.105 0.895 49 H 0.067 0.933 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.790 -20.189 6.240 22.887 hybrid contribution 0.627 0.918 0.022 1.112 sum -8.164 -19.271 6.261 21.845 Atomic orbital electron populations 1.22617 0.80603 1.01618 1.00703 1.90679 1.20885 1.18469 1.96923 1.67518 1.34547 1.08252 1.03244 1.22278 0.96208 0.96064 0.93514 1.21889 1.00560 0.95944 0.97637 1.21142 0.97836 0.82563 0.95020 1.45864 1.28972 1.10266 1.50111 1.20825 0.80543 0.89964 0.78939 1.90302 1.52495 1.54245 1.42074 1.19746 0.83296 0.87825 0.81640 1.90763 1.53487 1.51781 1.44143 1.48441 1.17355 1.10174 1.53833 1.23080 0.93763 0.95750 0.94586 1.21852 1.00639 0.98180 0.95871 1.21665 0.99493 0.93520 1.00420 1.18973 0.94173 0.93481 0.91232 0.95283 1.21097 1.01645 0.90086 1.42879 0.92243 1.25062 0.94828 0.99316 0.94895 1.69865 1.08368 1.31721 1.42122 0.86565 0.78996 0.84501 0.77784 1.20658 1.21160 1.19888 1.22487 1.02233 0.76262 1.00188 1.22039 1.00096 0.95168 0.99220 1.22337 0.97106 0.96485 0.92311 0.93681 0.89465 0.93684 0.93274 0.89335 0.89470 0.89742 0.88921 0.74925 0.92769 0.84008 0.92298 0.92354 0.93073 0.93259 0.92622 0.93395 0.85863 0.90162 0.89510 0.93295 0.89527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 11.51 101.05 1.16 1.46 16 2 O -0.27 -2.64 10.96 -13.92 -0.15 -2.79 16 3 N -0.37 -3.38 5.00 -113.81 -0.57 -3.95 16 4 C 0.05 0.37 5.99 -3.83 -0.02 0.35 16 5 C -0.12 -0.89 5.57 -26.65 -0.15 -1.04 16 6 C 0.14 1.34 2.52 -67.81 -0.17 1.17 16 7 N -0.70 -8.42 5.07 -54.12 -0.27 -8.69 16 8 C 0.51 8.10 7.75 -11.58 -0.09 8.01 16 9 O -0.51 -8.38 12.77 5.50 0.07 -8.31 16 10 C 0.49 9.77 7.74 -11.59 -0.09 9.68 16 11 O -0.52 -11.71 15.95 5.49 0.09 -11.62 16 12 N -0.57 -11.71 2.97 -173.27 -0.51 -12.23 16 13 C 0.05 0.88 6.27 -3.71 -0.02 0.86 16 14 C -0.13 -2.26 6.08 -26.61 -0.16 -2.42 16 15 C -0.11 -2.33 5.11 -26.69 -0.14 -2.47 16 16 C 0.04 1.01 2.25 -91.65 -0.21 0.80 16 17 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 18 C -0.52 -14.02 8.57 -34.44 -0.30 -14.32 16 19 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 20 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 21 N -0.88 -25.38 11.38 55.43 0.63 -24.75 16 22 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 26 C 0.11 2.62 5.38 -3.71 -0.02 2.60 16 27 C -0.13 -1.20 5.68 -26.64 -0.15 -1.36 16 28 C 0.05 0.42 5.99 -3.83 -0.02 0.39 16 29 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.09 0.97 7.58 -51.93 -0.39 0.58 16 37 H 0.41 4.70 8.09 -40.82 -0.33 4.37 16 38 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.14 2.41 3.78 -56.75 -0.21 2.20 16 40 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 45 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.12 3.42 5.17 -51.93 -0.27 3.15 16 47 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 50 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -31.09 393.87 -8.64 -39.72 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: -8.36 Total: 5.26 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: -0.47 Total: 5.31 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.73 Total: -49.62 kcal Atomic # 8 Polarization: -22.72 SS G_CDS: 0.01 Total: -22.72 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.09 -8.64 -39.72 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329100423.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.126 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds