Wall clock time and date at job start Sat Apr 11 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 N 1.46297 * 114.00296 * 2 1 4 4 C 1.46846 * 111.00430 * 119.99508 * 3 2 1 5 5 C 1.53038 * 109.52629 * 185.84036 * 4 3 2 6 6 C 1.53115 * 109.27826 * 300.82790 * 5 4 3 7 7 N 1.46502 * 109.52217 * 177.55952 * 6 5 4 8 8 C 1.34782 * 120.00166 * 155.12438 * 7 6 5 9 9 O 1.21350 * 119.99528 * 359.97438 * 8 7 6 10 10 C 1.49446 * 120.00084 * 179.97438 * 8 7 6 11 11 O 1.21356 * 119.99803 * 353.37756 * 10 8 7 12 12 N 1.34768 * 120.00057 * 173.37736 * 10 8 7 13 13 C 1.46923 * 120.63140 * 353.06161 * 12 10 8 14 14 C 1.53197 * 108.77603 * 126.41596 * 13 12 10 15 15 C 1.53036 * 109.34037 * 54.62030 * 14 13 12 16 16 C 1.53043 * 109.53781 * 298.68543 * 15 14 13 17 17 H 1.09000 * 109.49772 * 301.34791 * 16 15 14 18 18 C 1.50699 * 109.49861 * 181.28187 * 16 15 14 19 19 H 1.08009 * 119.99826 * 0.06421 * 18 16 15 20 20 C 1.37874 * 120.00391 * 180.34183 * 18 16 15 21 21 N 1.31511 * 119.99935 * 359.72505 * 20 18 16 22 22 Si 1.86803 * 120.00371 * 179.72468 * 20 18 16 23 23 H 1.48502 * 109.47059 * 89.99815 * 22 20 18 24 24 H 1.48498 * 109.47106 * 209.99770 * 22 20 18 25 25 H 1.48506 * 109.46912 * 330.00086 * 22 20 18 26 26 C 1.46927 * 120.63303 * 173.08900 * 12 10 8 27 27 C 1.53122 * 109.21812 * 57.61931 * 6 5 4 28 28 C 1.46843 * 111.00013 * 244.21314 * 3 2 1 29 29 H 1.08999 * 109.47374 * 60.00584 * 1 2 3 30 30 H 1.09003 * 109.47073 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47340 * 299.99765 * 1 2 3 32 32 H 1.09006 * 109.45738 * 65.82610 * 4 3 2 33 33 H 1.09003 * 109.46320 * 305.86244 * 4 3 2 34 34 H 1.08994 * 109.50188 * 180.88019 * 5 4 3 35 35 H 1.09000 * 109.53227 * 60.78404 * 5 4 3 36 36 H 1.09002 * 109.51907 * 297.68075 * 6 5 4 37 37 H 0.96996 * 120.00059 * 335.12061 * 7 6 5 38 38 H 1.08998 * 109.59171 * 246.19792 * 13 12 10 39 39 H 1.09003 * 109.58922 * 6.48999 * 13 12 10 40 40 H 1.08995 * 109.50150 * 174.58993 * 14 13 12 41 41 H 1.09009 * 109.49617 * 294.68452 * 14 13 12 42 42 H 1.08997 * 109.49188 * 178.64856 * 15 14 13 43 43 H 1.09001 * 109.43006 * 58.68768 * 15 14 13 44 44 H 0.97000 * 120.00590 * 180.02562 * 21 20 18 45 45 H 1.09003 * 109.59192 * 113.79627 * 26 12 10 46 46 H 1.08998 * 109.70190 * 353.44355 * 26 12 10 47 47 H 1.08997 * 109.50287 * 62.31654 * 27 6 5 48 48 H 1.08998 * 109.50555 * 182.43752 * 27 6 5 49 49 H 1.09001 * 109.46270 * 294.16892 * 28 3 2 50 50 H 1.08998 * 109.46794 * 54.14298 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 7 2.0241 1.3365 0.0000 4 6 2.8643 1.5385 1.1873 5 6 3.3508 2.9889 1.2288 6 6 4.1495 3.2907 -0.0422 7 7 4.5685 4.6945 -0.0353 8 6 5.6548 5.0771 -0.7355 9 8 6.2860 4.2585 -1.3712 10 6 6.0819 6.5092 -0.7289 11 8 5.3861 7.3474 -0.1940 12 7 7.2397 6.8698 -1.3169 13 6 8.1651 5.8527 -1.8343 14 6 8.4766 6.1698 -3.3004 15 6 8.9957 7.6053 -3.4092 16 6 7.9186 8.5774 -2.9225 17 1 7.0167 8.4507 -3.5214 18 6 8.4189 9.9923 -3.0595 19 1 9.4061 10.1800 -3.4553 20 6 7.6186 11.0468 -2.6743 21 7 6.4166 10.8183 -2.1923 22 14 8.2418 12.8004 -2.8370 23 1 7.8752 13.3339 -4.1735 24 1 7.6265 13.6443 -1.7813 25 1 9.7190 12.8167 -2.6856 26 6 7.6008 8.2876 -1.4521 27 6 3.2683 3.0257 -1.2661 28 6 2.7829 1.5746 -1.2344 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 3.7229 0.8685 1.1428 33 1 2.2830 1.3246 2.0842 34 1 3.9871 3.1344 2.1017 35 1 2.4934 3.6594 1.2876 36 1 5.0292 2.6482 -0.0807 37 1 4.0642 5.3487 0.4732 38 1 9.0872 5.8682 -1.2533 39 1 7.7036 4.8679 -1.7614 40 1 9.2356 5.4795 -3.6685 41 1 7.5696 6.0652 -3.8959 42 1 9.2409 7.8255 -4.4482 43 1 9.8890 7.7154 -2.7943 44 1 5.8534 11.5602 -1.9216 45 1 8.4769 8.5016 -0.8399 46 1 6.7677 8.9115 -1.1285 47 1 2.4092 3.6963 -1.2480 48 1 3.8458 3.1976 -2.1744 49 1 3.6420 0.9045 -1.2676 50 1 2.1427 1.3870 -2.0963 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329100423.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:36 Heat of formation + Delta-G solvation = -76.376782 kcal Electronic energy + Delta-G solvation = -30500.274415 eV Core-core repulsion = 26335.885778 eV Total energy + Delta-G solvation = -4164.388637 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.03760 -40.34292 -39.22874 -38.52593 -37.25788 -35.46766 -34.90105 -33.45021 -32.03075 -31.56928 -31.23160 -27.80456 -27.08388 -26.72436 -24.96680 -24.27421 -23.54937 -23.17384 -21.68810 -21.13165 -20.29534 -18.89031 -18.35415 -18.18865 -17.89522 -17.16957 -16.75085 -16.50266 -16.46512 -16.33934 -15.93021 -15.52619 -15.45305 -15.01178 -14.90673 -14.86854 -14.60100 -14.44984 -14.38771 -14.18188 -13.81313 -13.52356 -13.35717 -13.31966 -13.00861 -12.88427 -12.50410 -12.35542 -12.31772 -12.29322 -12.16368 -12.04283 -11.75560 -11.70222 -11.58057 -11.16911 -10.98334 -10.95183 -10.54782 -10.37139 -9.97302 -9.77455 -9.54372 -8.12599 -6.28926 0.35085 1.29275 1.42128 1.42483 1.53154 1.54842 2.15417 2.40984 2.56213 3.15555 3.29028 3.53309 3.67059 3.84035 4.02080 4.10877 4.14856 4.19209 4.24187 4.31984 4.42469 4.53122 4.59020 4.64026 4.64393 4.71530 4.72964 4.73195 4.81877 4.82095 4.82524 4.90686 4.98676 5.05107 5.05696 5.14502 5.19021 5.23857 5.29369 5.40561 5.53857 5.57013 5.70381 5.84101 5.93697 5.98389 6.02697 6.29719 6.45828 6.74699 6.83335 6.99079 7.40864 8.91527 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.023042 B = 0.002275 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.881782 B =12305.183181 C =12852.018845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.284 6.284 3 N -0.372 5.372 4 C 0.048 3.952 5 C -0.112 4.112 6 C 0.139 3.861 7 N -0.680 5.680 8 C 0.525 3.475 9 O -0.518 6.518 10 C 0.485 3.515 11 O -0.558 6.558 12 N -0.575 5.575 13 C 0.049 3.951 14 C -0.120 4.120 15 C -0.107 4.107 16 C 0.039 3.961 17 H -0.012 1.012 18 C -0.535 4.535 19 H 0.062 0.938 20 C 0.011 3.989 21 N -0.915 5.915 22 Si 0.959 3.041 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.263 1.263 26 C 0.121 3.879 27 C -0.120 4.120 28 C 0.051 3.949 29 H 0.044 0.956 30 H 0.106 0.894 31 H 0.049 0.951 32 H 0.048 0.952 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.419 0.581 38 H 0.070 0.930 39 H 0.157 0.843 40 H 0.097 0.903 41 H 0.046 0.954 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.262 0.738 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.073 0.927 49 H 0.046 0.954 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.005 -21.903 6.777 24.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.289 6.289 3 N -0.142 5.142 4 C -0.080 4.080 5 C -0.150 4.150 6 C 0.035 3.965 7 N -0.332 5.332 8 C 0.306 3.694 9 O -0.396 6.396 10 C 0.268 3.732 11 O -0.438 6.438 12 N -0.306 5.306 13 C -0.071 4.071 14 C -0.158 4.158 15 C -0.145 4.145 16 C 0.019 3.981 17 H 0.007 0.993 18 C -0.573 4.573 19 H 0.080 0.920 20 C -0.189 4.189 21 N -0.554 5.554 22 Si 0.785 3.215 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.188 1.188 26 C 0.000 4.000 27 C -0.159 4.159 28 C -0.078 4.078 29 H 0.062 0.938 30 H 0.124 0.876 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.118 0.882 34 H 0.121 0.879 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.257 0.743 38 H 0.088 0.912 39 H 0.173 0.827 40 H 0.116 0.884 41 H 0.065 0.935 42 H 0.072 0.928 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.062 0.938 46 H 0.103 0.897 47 H 0.099 0.901 48 H 0.091 0.909 49 H 0.064 0.936 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.350 -21.830 6.708 24.316 hybrid contribution 0.408 1.363 -0.115 1.428 sum -7.942 -20.466 6.593 22.922 Atomic orbital electron populations 1.22777 0.79269 1.02934 1.00845 1.90655 1.22395 1.18823 1.97007 1.67547 1.34844 1.08225 1.03559 1.22332 0.96206 0.96005 0.93475 1.21849 1.00603 0.95878 0.96715 1.21348 0.98127 0.80519 0.96485 1.45819 1.27358 1.11593 1.48407 1.19935 0.81753 0.87726 0.79953 1.90278 1.53147 1.53438 1.42750 1.20493 0.82520 0.89691 0.80529 1.90735 1.54247 1.53383 1.45385 1.48461 1.18491 1.09322 1.54321 1.23322 0.93934 0.95250 0.94572 1.21819 1.01134 0.96937 0.95939 1.21561 0.98206 0.94311 1.00380 1.18910 0.93845 0.94125 0.91176 0.99334 1.21484 1.01756 0.91495 1.42600 0.91953 1.25884 0.94935 1.03484 0.94580 1.70041 1.09593 1.32631 1.43110 0.85533 0.78847 0.79464 0.77693 1.20163 1.21121 1.18772 1.21935 1.00373 0.78287 0.99441 1.21946 0.99798 0.95713 0.98492 1.22256 0.97051 0.95769 0.92709 0.93758 0.87604 0.93275 0.93370 0.88155 0.87914 0.89129 0.89162 0.74330 0.91176 0.82684 0.88441 0.93537 0.92849 0.92471 0.92917 0.93844 0.89671 0.90141 0.90859 0.93594 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 11.51 113.37 1.30 1.78 16 2 O -0.28 -5.21 10.96 -50.15 -0.55 -5.76 16 3 N -0.37 -6.24 5.00 -513.98 -2.57 -8.81 16 4 C 0.05 0.65 5.99 86.33 0.52 1.16 16 5 C -0.11 -1.38 5.57 30.65 0.17 -1.21 16 6 C 0.14 2.44 2.52 45.07 0.11 2.55 16 7 N -0.68 -15.57 5.07 -443.48 -2.25 -17.82 16 8 C 0.52 16.13 7.75 87.27 0.68 16.81 16 9 O -0.52 -16.11 12.77 -3.25 -0.04 -16.15 16 10 C 0.49 19.46 7.74 87.27 0.68 20.14 16 11 O -0.56 -25.77 15.95 -3.27 -0.05 -25.82 16 12 N -0.57 -24.02 2.97 -820.48 -2.44 -26.46 16 13 C 0.05 1.67 6.27 86.36 0.54 2.21 16 14 C -0.12 -4.07 6.08 30.67 0.19 -3.88 16 15 C -0.11 -4.34 5.11 30.62 0.16 -4.18 16 16 C 0.04 1.98 2.25 -11.46 -0.03 1.95 16 17 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 18 C -0.53 -29.47 8.57 25.60 0.22 -29.25 16 19 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 20 C 0.01 0.59 5.30 84.65 0.45 1.04 16 21 N -0.92 -54.57 11.38 21.45 0.24 -54.33 16 22 Si 0.96 43.87 29.54 68.60 2.03 45.90 16 23 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 26 C 0.12 6.07 5.38 86.36 0.46 6.54 16 27 C -0.12 -2.16 5.68 30.65 0.17 -1.99 16 28 C 0.05 0.85 5.99 86.33 0.52 1.37 16 29 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.09 1.72 7.58 -2.39 -0.02 1.70 16 37 H 0.42 9.07 8.09 -92.71 -0.75 8.32 16 38 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.16 4.96 3.78 -78.73 -0.30 4.66 16 40 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 41 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 44 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 46 H 0.09 4.97 5.17 -2.39 -0.01 4.95 16 47 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 48 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 50 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -69.18 393.87 0.41 -68.77 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: -0.10 Total: 25.42 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 6.14 Total: 15.05 kcal Atomic # 7 Polarization: -100.40 SS G_CDS: -7.01 Total: -107.41 kcal Atomic # 8 Polarization: -47.09 SS G_CDS: -0.64 Total: -47.73 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.18 0.41 -68.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329100423.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.604 kcal (2) G-P(sol) polarization free energy of solvation -69.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds