Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.52995 * 109.46992 * 119.99878 * 2 1 3 5 5 H 1.09005 * 109.47189 * 299.99933 * 4 2 1 6 6 C 1.52999 * 109.47197 * 60.00301 * 4 2 1 7 7 C 1.53005 * 109.47150 * 185.00058 * 6 4 2 8 8 N 1.46493 * 109.47092 * 180.02562 * 7 6 4 9 9 C 1.46496 * 120.00429 * 89.99909 * 8 7 6 10 10 C 1.34785 * 119.99986 * 269.99698 * 8 7 6 11 11 O 1.21278 * 119.99545 * 0.02562 * 10 8 7 12 12 C 1.50693 * 120.00360 * 179.97438 * 10 8 7 13 13 N 1.46498 * 109.47351 * 180.02562 * 12 10 8 14 14 N 1.40176 * 126.34838 * 269.69183 * 13 12 10 15 15 C 1.29397 * 108.13926 * 179.87621 * 14 13 12 16 16 N 1.37361 * 108.82769 * 0.38383 * 15 14 13 17 17 C 1.46503 * 125.82899 * 179.77021 * 16 15 14 18 18 C 1.34813 * 108.33440 * 359.75441 * 16 15 14 19 19 O 1.21815 * 126.29763 * 180.02562 * 18 16 15 20 20 N 1.46506 * 109.47182 * 180.02562 * 4 2 1 21 21 C 1.36939 * 120.00073 * 84.72333 * 20 4 2 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 4 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 4 24 24 N 1.31622 * 120.00455 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00168 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46615 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47374 * 119.99782 * 25 23 21 28 28 H 1.48495 * 109.47187 * 240.00172 * 25 23 21 29 29 H 1.09001 * 109.47741 * 299.99811 * 1 2 3 30 30 H 1.09008 * 109.47401 * 60.00134 * 1 2 3 31 31 H 1.08997 * 109.47320 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47248 * 240.00191 * 2 1 3 33 33 H 1.09002 * 109.47121 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47224 * 299.99663 * 3 2 1 35 35 H 1.09005 * 109.47352 * 60.00022 * 3 2 1 36 36 H 1.08996 * 109.47238 * 304.99606 * 6 4 2 37 37 H 1.09004 * 109.47119 * 65.00146 * 6 4 2 38 38 H 1.09006 * 109.46641 * 299.99859 * 7 6 4 39 39 H 1.09000 * 109.47259 * 59.99588 * 7 6 4 40 40 H 1.08998 * 109.47582 * 89.99757 * 9 8 7 41 41 H 1.09003 * 109.47515 * 210.00207 * 9 8 7 42 42 H 1.09000 * 109.47268 * 329.99666 * 9 8 7 43 43 H 1.08999 * 109.47117 * 300.00433 * 12 10 8 44 44 H 1.09004 * 109.46880 * 60.00432 * 12 10 8 45 45 H 1.08001 * 125.58418 * 180.13363 * 15 14 13 46 46 H 1.08995 * 109.47437 * 269.97432 * 17 16 15 47 47 H 1.09003 * 109.47099 * 29.97921 * 17 16 15 48 48 H 1.09007 * 109.46590 * 149.97427 * 17 16 15 49 49 H 0.97005 * 119.99811 * 265.00126 * 20 4 2 50 50 H 0.97000 * 120.00679 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6766 -0.2073 2.1392 6 6 1.5300 -2.1637 1.2492 7 6 1.9347 -2.8477 2.5566 8 7 1.4470 -4.2291 2.5564 9 6 2.2874 -5.3026 2.0203 10 6 0.2249 -4.5124 3.0494 11 8 -0.4710 -3.6236 3.4928 12 6 -0.2771 -5.9333 3.0486 13 7 -1.6204 -5.9769 3.6316 14 7 -1.9330 -6.1670 4.9848 15 6 -3.2208 -6.1418 5.1081 16 7 -3.7811 -5.9480 3.8690 17 6 -5.2148 -5.8644 3.5797 18 6 -2.7863 -5.8474 2.9648 19 8 -2.9160 -5.6715 1.7664 20 7 3.5050 -0.7207 1.2496 21 6 4.1892 0.3567 1.7459 22 1 3.6488 1.2059 2.1374 23 6 5.5772 0.3574 1.7457 24 7 6.2359 -0.6777 1.2690 25 14 6.5107 1.8267 2.4233 26 1 5.5452 2.8513 2.8958 27 1 7.3648 1.3906 3.5572 28 1 7.3640 2.4065 1.3553 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 0.4437 -2.1651 1.1597 37 1 1.9647 -2.7028 0.4074 38 1 3.0211 -2.8464 2.6462 39 1 1.5001 -2.3087 3.3984 40 1 2.9052 -5.7136 2.8187 41 1 1.6542 -6.0890 1.6094 42 1 2.9281 -4.9041 1.2337 43 1 -0.3135 -6.3052 2.0247 44 1 0.3955 -6.5566 3.6379 45 1 -3.7660 -6.2585 6.0331 46 1 -5.6003 -6.8604 3.3620 47 1 -5.7366 -5.4538 4.4442 48 1 -5.3743 -5.2165 2.7176 49 1 3.9903 -1.4819 0.8945 50 1 7.2059 -0.6771 1.2685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329744690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = 25.905854 kcal Electronic energy + Delta-G solvation = -30450.993815 eV Core-core repulsion = 26323.333237 eV Total energy + Delta-G solvation = -4127.660578 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.61010 -39.79754 -37.41491 -37.34284 -35.63683 -35.27805 -33.01197 -32.33174 -31.31724 -29.73588 -28.54764 -27.20667 -26.93097 -26.09153 -24.96279 -23.24782 -22.71856 -21.66141 -21.02645 -19.36296 -19.07398 -17.87277 -17.49110 -17.12795 -16.51935 -16.38195 -16.09560 -15.58455 -15.30119 -14.97468 -14.70144 -14.11673 -13.90406 -13.75418 -13.53295 -13.45865 -13.17184 -13.10892 -13.04436 -12.68772 -12.60999 -12.45886 -12.19256 -12.06798 -11.90745 -11.60467 -11.52252 -11.14875 -10.89998 -10.74915 -10.68601 -10.46183 -10.43147 -10.22717 -10.17993 -9.98419 -9.85951 -9.63346 -9.39405 -8.85833 -8.73242 -8.48104 -6.89944 -5.74463 -3.00859 1.44818 1.74349 2.48962 2.60997 2.82978 3.18313 3.44254 3.51409 3.52390 4.14924 4.40210 4.46317 4.62101 4.64665 4.84769 4.86491 5.04758 5.13980 5.15457 5.33172 5.44709 5.52627 5.57148 5.57573 5.69882 5.70552 5.75187 5.83959 5.90405 6.02108 6.18296 6.18664 6.26645 6.28563 6.35912 6.47821 6.50995 6.61429 6.74289 6.80081 6.87202 6.93475 7.22631 7.38213 7.38846 7.44542 7.76106 7.84607 8.19274 8.44697 9.56103 10.13779 10.49662 11.48338 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.002542 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.292008 B =11011.669372 C =11803.931777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.140 4.140 4 C 0.185 3.815 5 H 0.047 0.953 6 C -0.136 4.136 7 C 0.121 3.879 8 N -0.609 5.609 9 C 0.072 3.928 10 C 0.494 3.506 11 O -0.526 6.526 12 C 0.144 3.856 13 N -0.437 5.437 14 N -0.273 5.273 15 C 0.254 3.746 16 N -0.562 5.562 17 C 0.100 3.900 18 C 0.652 3.348 19 O -0.552 6.552 20 N -0.722 5.722 21 C -0.226 4.226 22 H 0.072 0.928 23 C -0.016 4.016 24 N -0.934 5.934 25 Si 0.900 3.100 26 H -0.281 1.281 27 H -0.293 1.293 28 H -0.293 1.293 29 H 0.047 0.953 30 H 0.042 0.958 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.028 0.972 35 H 0.039 0.961 36 H 0.064 0.936 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.082 0.918 43 H 0.123 0.877 44 H 0.124 0.876 45 H 0.231 0.769 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.087 0.913 49 H 0.382 0.618 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.602 -15.877 5.458 25.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.197 4.197 4 C 0.075 3.925 5 H 0.065 0.935 6 C -0.175 4.175 7 C 0.000 4.000 8 N -0.343 5.343 9 C -0.071 4.071 10 C 0.279 3.721 11 O -0.402 6.402 12 C 0.019 3.981 13 N -0.257 5.257 14 N -0.093 5.093 15 C -0.045 4.045 16 N -0.291 5.291 17 C -0.042 4.042 18 C 0.352 3.648 19 O -0.425 6.425 20 N -0.363 5.363 21 C -0.357 4.357 22 H 0.090 0.910 23 C -0.211 4.211 24 N -0.583 5.583 25 Si 0.732 3.268 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.047 0.953 35 H 0.058 0.942 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.101 0.899 43 H 0.141 0.859 44 H 0.142 0.858 45 H 0.247 0.753 46 H 0.091 0.909 47 H 0.107 0.893 48 H 0.106 0.894 49 H 0.215 0.785 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.041 -15.211 5.375 24.957 hybrid contribution 0.140 0.685 -0.162 0.717 sum -18.901 -14.527 5.214 24.402 Atomic orbital electron populations 1.21922 0.97101 1.00794 1.00576 1.21739 0.93344 0.97559 1.00453 1.21838 1.04099 0.94971 0.98802 1.20213 0.85639 0.91594 0.95102 0.93451 1.22206 1.00755 0.97474 0.97053 1.21614 1.00483 0.79065 0.98885 1.47965 1.15880 1.09687 1.60767 1.21898 0.95397 0.90036 0.99796 1.20791 0.81886 0.90929 0.78484 1.90723 1.55590 1.47999 1.45871 1.21308 0.79755 0.96297 1.00760 1.48219 1.05698 1.67444 1.04320 1.76981 1.12834 1.22207 0.97314 1.25905 0.89881 0.97840 0.90912 1.45856 1.08794 1.66557 1.07941 1.21817 0.75169 1.03484 1.03745 1.16640 0.81402 0.81203 0.85591 1.91092 1.83831 1.57296 1.10255 1.42471 0.99058 1.20840 1.73892 1.19270 0.88784 0.96069 1.31558 0.91021 1.24686 0.96436 0.97741 1.02282 1.69656 1.06607 1.29749 1.52306 0.86210 0.80061 0.82340 0.78211 1.20602 1.22032 1.22050 0.93342 0.93930 0.93192 0.92333 0.89568 0.95257 0.94167 0.91770 0.92296 0.88807 0.90317 0.92063 0.91524 0.89886 0.85933 0.85850 0.75275 0.90890 0.89302 0.89394 0.78456 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 8.85 37.16 0.33 -2.08 16 2 C -0.11 -2.06 2.69 -90.62 -0.24 -2.30 16 3 C -0.14 -2.74 8.25 37.16 0.31 -2.43 16 4 C 0.19 3.71 2.02 -67.93 -0.14 3.57 16 5 H 0.05 1.02 8.08 -51.93 -0.42 0.60 16 6 C -0.14 -2.39 4.86 -26.73 -0.13 -2.52 16 7 C 0.12 2.07 5.29 -4.04 -0.02 2.05 16 8 N -0.61 -8.63 2.87 -181.58 -0.52 -9.15 16 9 C 0.07 0.72 10.24 59.84 0.61 1.33 16 10 C 0.49 7.56 7.74 -10.98 -0.09 7.47 16 11 O -0.53 -10.33 16.01 5.56 0.09 -10.24 16 12 C 0.14 1.66 5.42 -5.20 -0.03 1.64 16 13 N -0.44 -5.78 3.11 -66.32 -0.21 -5.99 16 14 N -0.27 -3.10 12.53 29.87 0.37 -2.72 16 15 C 0.25 1.92 12.66 -89.12 -1.13 0.79 16 16 N -0.56 -5.33 3.14 -130.10 -0.41 -5.74 16 17 C 0.10 0.52 11.05 59.85 0.66 1.18 16 18 C 0.65 9.20 8.60 -86.74 -0.75 8.46 16 19 O -0.55 -9.58 17.71 5.09 0.09 -9.49 16 20 N -0.72 -17.10 4.46 -53.42 -0.24 -17.33 16 21 C -0.23 -5.97 7.56 -15.06 -0.11 -6.08 16 22 H 0.07 1.89 7.37 -52.48 -0.39 1.51 16 23 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 24 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 25 Si 0.90 22.20 29.55 -169.99 -5.02 17.18 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 31 H 0.05 0.81 6.32 -51.93 -0.33 0.48 16 32 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.95 5.99 -51.93 -0.31 1.64 16 34 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.06 1.16 6.17 -51.93 -0.32 0.84 16 37 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 1.72 7.68 -51.93 -0.40 1.32 16 39 H 0.08 1.50 7.42 -51.93 -0.39 1.11 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.07 0.48 6.44 -51.93 -0.33 0.15 16 42 H 0.08 0.87 8.07 -51.93 -0.42 0.46 16 43 H 0.12 1.21 7.37 -51.93 -0.38 0.83 16 44 H 0.12 1.04 8.11 -51.93 -0.42 0.62 16 45 H 0.23 0.38 8.06 -52.49 -0.42 -0.04 16 46 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 47 H 0.09 0.17 8.14 -51.93 -0.42 -0.25 16 48 H 0.09 0.59 8.08 -51.92 -0.42 0.17 16 49 H 0.38 9.58 7.80 -40.82 -0.32 9.26 16 50 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 409.07 15.07 6.16 6.16 Total: -1.00 -37.70 409.07 -7.99 -45.69 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -8.21 Total: 7.62 kcal Atomic # 6 Polarization: 11.36 SS G_CDS: -0.82 Total: 10.54 kcal Atomic # 7 Polarization: -67.18 SS G_CDS: -0.28 Total: -67.45 kcal Atomic # 8 Polarization: -19.91 SS G_CDS: 0.18 Total: -19.73 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.70 -7.99 -45.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329744690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.591 kcal (2) G-P(sol) polarization free energy of solvation -37.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds