Wall clock time and date at job start Sat Apr 11 2020 05:48:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52999 * 109.46904 * 2 1 4 4 C 1.52995 * 109.46992 * 119.99878 * 2 1 3 5 5 H 1.09005 * 109.47189 * 299.99933 * 4 2 1 6 6 C 1.52999 * 109.47197 * 60.00301 * 4 2 1 7 7 C 1.53005 * 109.47150 * 185.00058 * 6 4 2 8 8 N 1.46493 * 109.47092 * 180.02562 * 7 6 4 9 9 C 1.46496 * 120.00429 * 89.99909 * 8 7 6 10 10 C 1.34785 * 119.99986 * 269.99698 * 8 7 6 11 11 O 1.21278 * 119.99545 * 0.02562 * 10 8 7 12 12 C 1.50693 * 120.00360 * 179.97438 * 10 8 7 13 13 N 1.46498 * 109.47351 * 180.02562 * 12 10 8 14 14 N 1.40176 * 126.34838 * 269.69183 * 13 12 10 15 15 C 1.29397 * 108.13926 * 179.87621 * 14 13 12 16 16 N 1.37361 * 108.82769 * 0.38383 * 15 14 13 17 17 C 1.46503 * 125.82899 * 179.77021 * 16 15 14 18 18 C 1.34813 * 108.33440 * 359.75441 * 16 15 14 19 19 O 1.21815 * 126.29763 * 180.02562 * 18 16 15 20 20 N 1.46506 * 109.47182 * 180.02562 * 4 2 1 21 21 C 1.36939 * 120.00073 * 84.72333 * 20 4 2 22 22 H 1.08004 * 119.99859 * 0.02562 * 21 20 4 23 23 C 1.38805 * 119.99849 * 180.02562 * 21 20 4 24 24 N 1.31622 * 120.00455 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00168 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46615 * 359.97438 * 25 23 21 27 27 H 1.48498 * 109.47374 * 119.99782 * 25 23 21 28 28 H 1.48495 * 109.47187 * 240.00172 * 25 23 21 29 29 H 1.09001 * 109.47741 * 299.99811 * 1 2 3 30 30 H 1.09008 * 109.47401 * 60.00134 * 1 2 3 31 31 H 1.08997 * 109.47320 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47248 * 240.00191 * 2 1 3 33 33 H 1.09002 * 109.47121 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.47224 * 299.99663 * 3 2 1 35 35 H 1.09005 * 109.47352 * 60.00022 * 3 2 1 36 36 H 1.08996 * 109.47238 * 304.99606 * 6 4 2 37 37 H 1.09004 * 109.47119 * 65.00146 * 6 4 2 38 38 H 1.09006 * 109.46641 * 299.99859 * 7 6 4 39 39 H 1.09000 * 109.47259 * 59.99588 * 7 6 4 40 40 H 1.08998 * 109.47582 * 89.99757 * 9 8 7 41 41 H 1.09003 * 109.47515 * 210.00207 * 9 8 7 42 42 H 1.09000 * 109.47268 * 329.99666 * 9 8 7 43 43 H 1.08999 * 109.47117 * 300.00433 * 12 10 8 44 44 H 1.09004 * 109.46880 * 60.00432 * 12 10 8 45 45 H 1.08001 * 125.58418 * 180.13363 * 15 14 13 46 46 H 1.08995 * 109.47437 * 269.97432 * 17 16 15 47 47 H 1.09003 * 109.47099 * 29.97921 * 17 16 15 48 48 H 1.09007 * 109.46590 * 149.97427 * 17 16 15 49 49 H 0.97005 * 119.99811 * 265.00126 * 20 4 2 50 50 H 0.97000 * 120.00679 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 1 1.6766 -0.2073 2.1392 6 6 1.5300 -2.1637 1.2492 7 6 1.9347 -2.8477 2.5566 8 7 1.4470 -4.2291 2.5564 9 6 2.2874 -5.3026 2.0203 10 6 0.2249 -4.5124 3.0494 11 8 -0.4710 -3.6236 3.4928 12 6 -0.2771 -5.9333 3.0486 13 7 -1.6204 -5.9769 3.6316 14 7 -1.9330 -6.1670 4.9848 15 6 -3.2208 -6.1418 5.1081 16 7 -3.7811 -5.9480 3.8690 17 6 -5.2148 -5.8644 3.5797 18 6 -2.7863 -5.8474 2.9648 19 8 -2.9160 -5.6715 1.7664 20 7 3.5050 -0.7207 1.2496 21 6 4.1892 0.3567 1.7459 22 1 3.6488 1.2059 2.1374 23 6 5.5772 0.3574 1.7457 24 7 6.2359 -0.6777 1.2690 25 14 6.5107 1.8267 2.4233 26 1 5.5452 2.8513 2.8958 27 1 7.3648 1.3906 3.5572 28 1 7.3640 2.4065 1.3553 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1299 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 0.4437 -2.1651 1.1597 37 1 1.9647 -2.7028 0.4074 38 1 3.0211 -2.8464 2.6462 39 1 1.5001 -2.3087 3.3984 40 1 2.9052 -5.7136 2.8187 41 1 1.6542 -6.0890 1.6094 42 1 2.9281 -4.9041 1.2337 43 1 -0.3135 -6.3052 2.0247 44 1 0.3955 -6.5566 3.6379 45 1 -3.7660 -6.2585 6.0331 46 1 -5.6003 -6.8604 3.3620 47 1 -5.7366 -5.4538 4.4442 48 1 -5.3743 -5.2165 2.7176 49 1 3.9903 -1.4819 0.8945 50 1 7.2059 -0.6771 1.2685 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329744690.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:43 Heat of formation + Delta-G solvation = 1.037827 kcal Electronic energy + Delta-G solvation = -30452.072173 eV Core-core repulsion = 26323.333237 eV Total energy + Delta-G solvation = -4128.738936 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.41943 -40.99958 -38.97179 -38.42350 -36.77060 -36.20982 -34.94368 -33.39750 -32.63341 -31.47472 -29.49010 -28.19548 -27.83269 -27.51268 -26.43760 -24.88615 -23.69945 -22.79999 -22.22330 -20.84558 -20.36953 -19.13980 -18.73114 -18.48124 -17.48665 -17.21574 -17.16660 -16.83252 -16.57522 -16.34568 -15.78544 -15.53938 -15.35195 -15.26751 -14.94663 -14.64982 -14.31380 -14.16809 -14.06679 -13.58806 -13.58150 -13.48486 -13.41315 -13.18626 -13.02562 -13.00866 -12.91134 -12.88057 -12.75811 -12.53946 -12.22278 -11.99246 -11.76582 -11.75135 -11.57587 -11.43750 -11.42017 -11.23112 -10.85008 -10.70711 -9.72407 -9.65569 -8.90616 -7.87745 -5.12593 0.65599 1.08775 1.45904 1.46847 1.48796 1.54634 1.56744 1.98255 2.29352 2.59333 3.38732 3.44591 3.45116 3.87419 3.91594 4.02826 4.07568 4.09056 4.16524 4.17258 4.28678 4.38388 4.41272 4.46848 4.53177 4.63745 4.66769 4.71359 4.74515 4.79232 4.85603 4.88230 4.94348 4.99555 5.00179 5.07082 5.12088 5.15094 5.29306 5.37316 5.48930 5.58545 5.63830 5.67798 5.72808 6.31330 6.34753 6.60177 6.90601 7.03615 7.42044 8.14892 8.42086 9.35665 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.002542 C = 0.002372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.292008 B =11011.669372 C =11803.931777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.106 4.106 3 C -0.135 4.135 4 C 0.185 3.815 5 H 0.031 0.969 6 C -0.120 4.120 7 C 0.132 3.868 8 N -0.607 5.607 9 C 0.064 3.936 10 C 0.489 3.511 11 O -0.578 6.578 12 C 0.146 3.854 13 N -0.447 5.447 14 N -0.312 5.312 15 C 0.278 3.722 16 N -0.560 5.560 17 C 0.092 3.908 18 C 0.631 3.369 19 O -0.599 6.599 20 N -0.725 5.725 21 C -0.212 4.212 22 H 0.070 0.930 23 C -0.073 4.073 24 N -0.966 5.966 25 Si 0.956 3.044 26 H -0.272 1.272 27 H -0.297 1.297 28 H -0.297 1.297 29 H 0.047 0.953 30 H 0.062 0.938 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.039 0.961 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.080 0.920 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.139 0.861 44 H 0.157 0.843 45 H 0.290 0.710 46 H 0.092 0.908 47 H 0.129 0.871 48 H 0.066 0.934 49 H 0.374 0.626 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.533 -17.040 6.338 28.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.127 4.127 3 C -0.192 4.192 4 C 0.076 3.924 5 H 0.049 0.951 6 C -0.159 4.159 7 C 0.009 3.991 8 N -0.340 5.340 9 C -0.077 4.077 10 C 0.276 3.724 11 O -0.458 6.458 12 C 0.021 3.979 13 N -0.266 5.266 14 N -0.133 5.133 15 C -0.019 4.019 16 N -0.287 5.287 17 C -0.048 4.048 18 C 0.330 3.670 19 O -0.477 6.477 20 N -0.365 5.365 21 C -0.345 4.345 22 H 0.088 0.912 23 C -0.265 4.265 24 N -0.617 5.617 25 Si 0.787 3.213 26 H -0.196 1.196 27 H -0.224 1.224 28 H -0.225 1.225 29 H 0.066 0.934 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.098 0.902 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.119 0.881 42 H 0.095 0.905 43 H 0.157 0.843 44 H 0.175 0.825 45 H 0.305 0.695 46 H 0.111 0.889 47 H 0.148 0.852 48 H 0.085 0.915 49 H 0.207 0.793 50 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -21.016 -16.396 6.282 27.386 hybrid contribution 0.602 1.029 -0.383 1.252 sum -20.415 -15.368 5.899 26.224 Atomic orbital electron populations 1.21818 0.94841 1.01284 1.01531 1.21637 0.95149 0.96799 0.99133 1.21749 1.01831 0.95727 0.99920 1.20311 0.83663 0.93263 0.95140 0.95091 1.22015 1.00329 0.95969 0.97557 1.21242 0.99243 0.81004 0.97603 1.48012 1.16236 1.09277 1.60452 1.22199 0.95706 0.89504 1.00291 1.21527 0.81421 0.92173 0.77291 1.90685 1.57024 1.49819 1.48239 1.21465 0.80122 0.93784 1.02481 1.48404 1.05813 1.67127 1.05215 1.76993 1.15022 1.25121 0.96188 1.27124 0.89076 0.94050 0.91688 1.46132 1.09574 1.65214 1.07786 1.22174 0.73158 1.04626 1.04869 1.17059 0.82676 0.81538 0.85709 1.91029 1.84739 1.59572 1.12314 1.42532 1.00466 1.19879 1.73585 1.19465 0.88948 0.96252 1.29790 0.91203 1.25307 0.97357 1.00041 1.03791 1.69779 1.06304 1.31368 1.54290 0.85317 0.78808 0.80007 0.77198 1.19638 1.22418 1.22462 0.93388 0.91943 0.92974 0.92733 0.92864 0.92968 0.94223 0.91936 0.91592 0.90209 0.92840 0.90277 0.88141 0.90473 0.84324 0.82549 0.69513 0.88931 0.85236 0.91489 0.79310 0.94337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.32 8.85 71.98 0.64 -3.69 16 2 C -0.11 -3.94 2.69 -10.80 -0.03 -3.97 16 3 C -0.13 -5.20 8.25 71.98 0.59 -4.61 16 4 C 0.19 7.55 2.02 44.99 0.09 7.64 16 5 H 0.03 1.37 8.08 -2.38 -0.02 1.35 16 6 C -0.12 -4.26 4.86 30.60 0.15 -4.12 16 7 C 0.13 4.65 5.29 86.38 0.46 5.11 16 8 N -0.61 -17.11 2.87 -846.77 -2.43 -19.54 16 9 C 0.06 1.19 10.24 127.77 1.31 2.50 16 10 C 0.49 14.94 7.74 87.65 0.68 15.62 16 11 O -0.58 -23.31 16.01 -3.02 -0.05 -23.36 16 12 C 0.15 3.21 5.42 85.63 0.46 3.68 16 13 N -0.45 -11.46 3.11 -481.80 -1.50 -12.96 16 14 N -0.31 -6.55 12.53 -59.42 -0.74 -7.29 16 15 C 0.28 3.37 12.66 179.82 2.28 5.64 16 16 N -0.56 -9.56 3.14 -683.68 -2.15 -11.71 16 17 C 0.09 0.74 11.05 127.77 1.41 2.15 16 18 C 0.63 17.61 8.60 178.99 1.54 19.15 16 19 O -0.60 -21.28 17.71 -4.72 -0.08 -21.36 16 20 N -0.72 -35.05 4.46 -322.93 -1.44 -36.49 16 21 C -0.21 -11.41 7.56 84.03 0.64 -10.77 16 22 H 0.07 3.73 7.37 -2.91 -0.02 3.71 16 23 C -0.07 -4.10 5.50 84.86 0.47 -3.63 16 24 N -0.97 -57.39 13.06 21.65 0.28 -57.11 16 25 Si 0.96 46.26 29.55 68.60 2.03 48.28 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 27 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 28 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 29 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.06 1.73 8.14 -2.38 -0.02 1.72 16 31 H 0.05 1.62 6.32 -2.39 -0.02 1.61 16 32 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.05 2.41 5.99 -2.39 -0.01 2.39 16 34 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 35 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.06 2.28 6.17 -2.39 -0.01 2.26 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.08 3.03 7.68 -2.38 -0.02 3.01 16 39 H 0.05 2.14 7.42 -2.39 -0.02 2.12 16 40 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.10 1.19 6.44 -2.39 -0.02 1.17 16 42 H 0.08 1.55 8.07 -2.39 -0.02 1.53 16 43 H 0.14 2.54 7.37 -2.39 -0.02 2.52 16 44 H 0.16 2.29 8.11 -2.38 -0.02 2.27 16 45 H 0.29 -0.56 8.06 -2.91 -0.02 -0.58 16 46 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 47 H 0.13 -0.02 8.14 -2.39 -0.02 -0.04 16 48 H 0.07 0.86 8.08 -2.38 -0.02 0.84 16 49 H 0.37 19.23 7.80 -92.70 -0.72 18.51 16 50 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 Total: -1.00 -86.36 409.07 4.81 -81.55 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: 0.22 Total: 29.28 kcal Atomic # 6 Polarization: 20.03 SS G_CDS: 10.68 Total: 30.70 kcal Atomic # 7 Polarization: -137.11 SS G_CDS: -7.98 Total: -145.09 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.13 Total: -44.72 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -86.36 4.81 -81.55 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329744690.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.585 kcal (2) G-P(sol) polarization free energy of solvation -86.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds