Wall clock time and date at job start Sat Apr 11 2020 05:48:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 113.99797 * 2 1 4 4 H 1.08998 * 112.84990 * 18.79560 * 3 2 1 5 5 C 1.53782 * 113.61703 * 150.00007 * 3 2 1 6 6 C 1.53782 * 87.08219 * 139.97827 * 5 3 2 7 7 H 1.08999 * 113.61136 * 89.19815 * 6 5 3 8 8 C 1.52998 * 113.61268 * 220.02168 * 6 5 3 9 9 N 1.46500 * 109.47130 * 184.99964 * 8 6 5 10 10 C 1.34780 * 120.00114 * 179.97438 * 9 8 6 11 11 O 1.21345 * 119.99717 * 0.02562 * 10 9 8 12 12 C 1.49455 * 119.99810 * 179.97438 * 10 9 8 13 13 O 1.21344 * 119.99878 * 6.49313 * 12 10 9 14 14 N 1.34772 * 119.99597 * 186.48572 * 12 10 9 15 15 C 1.47080 * 120.87874 * 178.47596 * 14 12 10 16 16 C 1.53249 * 108.52108 * 231.20798 * 15 14 12 17 17 N 1.46893 * 109.33892 * 306.17494 * 16 15 14 18 18 C 1.46903 * 110.99561 * 187.25387 * 17 16 15 19 19 C 1.50707 * 109.46843 * 169.99822 * 18 17 16 20 20 H 1.07998 * 120.00156 * 359.97438 * 19 18 17 21 21 C 1.37880 * 119.99594 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99708 * 179.97438 * 21 19 18 23 23 Si 1.86795 * 120.00159 * 0.27059 * 21 19 18 24 24 H 1.48502 * 109.47317 * 269.72419 * 23 21 19 25 25 H 1.48501 * 109.47286 * 29.72988 * 23 21 19 26 26 H 1.48506 * 109.47109 * 149.72701 * 23 21 19 27 27 C 1.46893 * 111.27499 * 63.10076 * 17 16 15 28 28 C 1.47077 * 120.88400 * 358.50460 * 14 12 10 29 29 C 1.53781 * 113.61278 * 247.49861 * 3 2 1 30 30 H 1.09006 * 109.46848 * 60.00600 * 1 2 3 31 31 H 1.09002 * 109.46940 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47079 * 300.00228 * 1 2 3 33 33 H 1.09006 * 113.60987 * 25.42901 * 5 3 2 34 34 H 1.08993 * 113.68901 * 254.53766 * 5 3 2 35 35 H 1.08995 * 109.47667 * 64.99585 * 8 6 5 36 36 H 1.09005 * 109.46887 * 305.00096 * 8 6 5 37 37 H 0.97002 * 119.99993 * 0.02562 * 9 8 6 38 38 H 1.08997 * 109.62939 * 111.50001 * 15 14 12 39 39 H 1.08994 * 109.62723 * 350.91625 * 15 14 12 40 40 H 1.08998 * 109.48901 * 186.20861 * 16 15 14 41 41 H 1.09001 * 109.50774 * 66.14616 * 16 15 14 42 42 H 1.08999 * 109.47395 * 50.00081 * 18 17 16 43 43 H 1.08994 * 109.47001 * 289.99457 * 18 17 16 44 44 H 0.97005 * 119.99996 * 180.02562 * 22 21 19 45 45 H 1.09005 * 109.48922 * 56.85739 * 27 17 16 46 46 H 1.08995 * 109.49524 * 176.93274 * 27 17 16 47 47 H 1.09007 * 109.62918 * 248.49881 * 28 14 12 48 48 H 1.08995 * 109.62941 * 9.07969 * 28 14 12 49 49 H 1.08998 * 113.62242 * 105.46766 * 29 3 2 50 50 H 1.09008 * 113.61456 * 334.56281 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3137 2.0788 0.3236 5 6 3.3756 1.3720 0.7045 6 6 3.8227 2.3182 -0.4223 7 1 3.6234 3.3695 -0.2144 8 6 5.2543 2.0680 -0.9007 9 7 5.6260 3.0886 -1.8838 10 6 6.8509 3.0684 -2.4458 11 8 7.6455 2.2046 -2.1379 12 6 7.2298 4.1093 -3.4491 13 8 6.4821 5.0389 -3.6709 14 7 8.4021 4.0155 -4.1073 15 6 8.7796 5.0106 -5.1225 16 6 9.1880 4.2709 -6.4010 17 7 10.2284 3.2845 -6.0810 18 6 10.7693 2.6748 -7.3032 19 6 11.9897 1.8597 -6.9602 20 1 12.3296 1.8008 -5.9367 21 6 12.6727 1.1899 -7.9531 22 7 13.7380 0.4790 -7.6538 23 14 12.0901 1.2990 -9.7245 24 1 11.1280 0.2012 -9.9977 25 1 11.4242 2.6076 -9.9469 26 1 13.2549 1.1749 -10.6373 27 6 9.7241 2.2579 -5.1593 28 6 9.3377 2.9150 -3.8300 29 6 2.7534 1.6489 -1.3018 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8899 33 1 3.9089 0.4213 0.7138 34 1 3.3398 1.8469 1.6849 35 1 5.3168 1.0815 -1.3599 36 1 5.9351 2.1169 -0.0509 37 1 4.9909 3.7793 -2.1296 38 1 9.6184 5.6043 -4.7592 39 1 7.9302 5.6609 -5.3313 40 1 9.5754 4.9858 -7.1268 41 1 8.3201 3.7614 -6.8198 42 1 11.0427 3.4583 -8.0099 43 1 10.0149 2.0283 -7.7513 44 1 14.2188 0.0081 -8.3524 45 1 8.8486 1.7763 -5.5950 46 1 10.5003 1.5129 -4.9847 47 1 10.2302 3.3073 -3.3424 48 1 8.8573 2.1800 -3.1843 49 1 2.2141 2.3476 -1.9413 50 1 3.1167 0.7739 -1.8410 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330542933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:51 Heat of formation + Delta-G solvation = -58.603027 kcal Electronic energy + Delta-G solvation = -29485.872490 eV Core-core repulsion = 25322.254581 eV Total energy + Delta-G solvation = -4163.617909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.00438 -40.06579 -38.77476 -37.67837 -36.93868 -35.06071 -34.09649 -32.36673 -30.84902 -29.15148 -28.70430 -27.08593 -26.27605 -26.04338 -24.18600 -23.30718 -22.50853 -21.38674 -20.84186 -20.14574 -19.36005 -17.75716 -17.17814 -16.99308 -16.75327 -16.30849 -16.04762 -15.96611 -15.57085 -15.30035 -14.81338 -14.67908 -14.54265 -14.38838 -14.10604 -13.94640 -13.53733 -13.43296 -13.07283 -12.92015 -12.81828 -12.41350 -12.39371 -12.35070 -11.98765 -11.68006 -11.50839 -11.45213 -11.22563 -11.18173 -10.96266 -10.81247 -10.75672 -10.60580 -10.33022 -9.94527 -9.84582 -9.51058 -9.33372 -9.02057 -8.63687 -8.58977 -7.45741 -6.06900 -4.04634 1.35893 2.23471 3.14969 3.27002 3.29663 3.34898 3.36409 3.43324 3.97903 4.05899 4.25184 4.28216 4.31580 4.40327 4.57021 4.69579 4.78205 4.87767 4.91868 5.18559 5.21006 5.22772 5.24600 5.25387 5.33060 5.36580 5.37729 5.49216 5.53694 5.59844 5.62896 5.72425 5.79660 5.85716 5.92134 6.11470 6.24021 6.43283 6.49807 6.60092 6.75522 6.81320 6.88524 6.94538 7.31938 7.55264 7.67753 7.83017 7.93969 7.97755 8.62182 9.01100 9.54461 11.05985 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016737 B = 0.001989 C = 0.001896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.584605 B =14071.887740 C =14765.880851 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.377 6.377 3 C 0.060 3.940 4 H 0.088 0.912 5 C -0.125 4.125 6 C -0.125 4.125 7 H 0.102 0.898 8 C 0.129 3.871 9 N -0.700 5.700 10 C 0.510 3.490 11 O -0.503 6.503 12 C 0.503 3.497 13 O -0.538 6.538 14 N -0.569 5.569 15 C 0.114 3.886 16 C 0.039 3.961 17 N -0.528 5.528 18 C 0.162 3.838 19 C -0.511 4.511 20 H 0.082 0.918 21 C 0.069 3.931 22 N -0.898 5.898 23 Si 0.876 3.124 24 H -0.278 1.278 25 H -0.268 1.268 26 H -0.285 1.285 27 C 0.051 3.949 28 C 0.056 3.944 29 C -0.152 4.152 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.412 0.588 38 H 0.081 0.919 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.027 0.973 42 H 0.030 0.970 43 H -0.016 1.016 44 H 0.264 0.736 45 H 0.023 0.977 46 H 0.104 0.896 47 H 0.076 0.924 48 H 0.150 0.850 49 H 0.072 0.928 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.799 4.792 16.386 30.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.295 6.295 3 C 0.002 3.998 4 H 0.106 0.894 5 C -0.163 4.163 6 C -0.144 4.144 7 H 0.120 0.880 8 C 0.006 3.994 9 N -0.353 5.353 10 C 0.292 3.708 11 O -0.380 6.380 12 C 0.285 3.715 13 O -0.417 6.417 14 N -0.301 5.301 15 C -0.009 4.009 16 C -0.091 4.091 17 N -0.252 5.252 18 C 0.036 3.964 19 C -0.549 4.549 20 H 0.100 0.900 21 C -0.133 4.133 22 N -0.537 5.537 23 Si 0.703 3.297 24 H -0.204 1.204 25 H -0.192 1.192 26 H -0.211 1.211 27 C -0.078 4.078 28 C -0.065 4.065 29 C -0.190 4.190 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.115 0.885 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.248 0.752 38 H 0.099 0.901 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.045 0.955 42 H 0.048 0.952 43 H 0.002 0.998 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.122 0.878 47 H 0.094 0.906 48 H 0.166 0.834 49 H 0.091 0.909 50 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.967 4.613 16.635 30.354 hybrid contribution -1.252 0.139 -1.717 2.129 sum -26.218 4.752 14.918 30.537 Atomic orbital electron populations 1.22799 0.81140 1.02873 0.99907 1.87966 1.19686 1.27296 1.94563 1.23707 0.93895 0.85365 0.96839 0.89401 1.23207 0.95249 1.00268 0.97602 1.22579 0.93663 1.00233 0.97886 0.88022 1.21473 0.94633 0.91638 0.91660 1.45777 1.14909 1.31917 1.42731 1.20308 0.82576 0.85494 0.82388 1.90405 1.48688 1.37870 1.61011 1.19900 0.82484 0.86255 0.82828 1.90716 1.51097 1.34043 1.65854 1.48199 1.17208 1.27691 1.37046 1.21924 1.00772 0.90591 0.87567 1.22442 0.94248 0.96593 0.95768 1.61957 1.30860 1.15697 1.16724 1.20193 0.94982 0.94004 0.87223 1.21018 1.09106 1.27857 0.96920 0.89994 1.24898 0.94772 0.94953 0.98671 1.69892 1.18497 1.31975 1.33356 0.86861 0.78477 0.78881 0.85481 1.20392 1.19243 1.21122 1.22401 0.99044 0.94589 0.91732 1.23489 0.93476 0.90023 0.99467 1.23644 0.97085 1.01157 0.97085 0.93986 0.89634 0.94038 0.88466 0.90433 0.90377 0.90445 0.75164 0.90097 0.89118 0.89805 0.95465 0.95216 0.99844 0.92631 0.95901 0.87787 0.90584 0.83354 0.90938 0.88672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.85 101.05 1.10 1.25 16 2 O -0.38 -2.97 10.71 -35.23 -0.38 -3.35 16 3 C 0.06 0.35 4.31 -25.92 -0.11 0.24 16 4 H 0.09 0.39 7.87 -51.93 -0.41 -0.02 16 5 C -0.13 -0.68 7.47 -25.92 -0.19 -0.87 16 6 C -0.12 -0.67 3.75 -89.81 -0.34 -1.01 16 7 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 8 C 0.13 0.98 5.51 -4.04 -0.02 0.96 16 9 N -0.70 -6.61 5.55 -60.73 -0.34 -6.95 16 10 C 0.51 6.61 7.81 -11.58 -0.09 6.52 16 11 O -0.50 -7.44 13.03 5.50 0.07 -7.37 16 12 C 0.50 7.39 7.77 -11.58 -0.09 7.30 16 13 O -0.54 -8.41 15.95 5.50 0.09 -8.32 16 14 N -0.57 -8.87 3.01 -172.97 -0.52 -9.39 16 15 C 0.11 1.70 6.59 -3.60 -0.02 1.68 16 16 C 0.04 0.66 5.62 -3.70 -0.02 0.64 16 17 N -0.53 -10.92 4.62 -235.77 -1.09 -12.00 16 18 C 0.16 3.90 3.79 -4.97 -0.02 3.88 16 19 C -0.51 -14.33 8.96 -34.44 -0.31 -14.64 16 20 H 0.08 2.49 7.37 -52.49 -0.39 2.10 16 21 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 22 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 23 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.27 -6.30 6.53 56.52 0.37 -5.93 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 C 0.05 0.99 5.46 -3.71 -0.02 0.97 16 28 C 0.06 0.92 6.36 -3.60 -0.02 0.90 16 29 C -0.15 -0.91 7.46 -25.92 -0.19 -1.11 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 0.60 8.10 -51.93 -0.42 0.18 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.66 7.84 -51.93 -0.41 0.26 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.41 3.37 7.96 -40.82 -0.32 3.05 16 38 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.27 7.07 -51.93 -0.37 0.90 16 40 H 0.08 1.33 7.99 -51.93 -0.41 0.92 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.03 0.72 7.01 -51.93 -0.36 0.36 16 43 H -0.02 -0.39 7.56 -51.93 -0.39 -0.78 16 44 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.10 2.22 6.67 -51.93 -0.35 1.87 16 47 H 0.08 1.26 8.14 -51.92 -0.42 0.83 16 48 H 0.15 2.40 3.92 -56.54 -0.22 2.18 16 49 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.69 7.90 -51.92 -0.41 0.28 16 LS Contribution 397.37 15.07 5.99 5.99 Total: -1.00 -32.92 397.37 -8.81 -41.73 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -8.28 Total: 0.86 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.46 Total: 8.59 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -1.17 Total: -54.90 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.22 Total: -19.04 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -32.92 -8.81 -41.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330542933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.870 kcal (2) G-P(sol) polarization free energy of solvation -32.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds