Wall clock time and date at job start Sat Apr 11 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.37362 * 125.83369 * 2 1 4 4 N 1.29402 * 108.83052 * 179.77673 * 3 2 1 5 5 N 1.40176 * 108.13770 * 0.38851 * 4 3 2 6 6 C 1.46493 * 126.34630 * 179.87366 * 5 4 3 7 7 C 1.52996 * 109.47400 * 269.68844 * 6 5 4 8 8 C 1.50702 * 109.47159 * 180.02562 * 7 6 5 9 9 O 1.21283 * 120.00262 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99928 * 179.72352 * 8 7 6 11 11 C 1.46499 * 120.00199 * 180.27479 * 10 8 7 12 12 H 1.09007 * 109.47463 * 325.00619 * 11 10 8 13 13 C 1.52995 * 109.47455 * 205.00257 * 11 10 8 14 14 N 1.46495 * 109.47115 * 55.00282 * 13 11 10 15 15 C 1.36941 * 120.00227 * 180.02562 * 14 13 11 16 16 H 1.07996 * 119.99644 * 359.97438 * 15 14 13 17 17 C 1.38808 * 120.00108 * 180.02562 * 15 14 13 18 18 N 1.31625 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86802 * 120.00100 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46857 * 59.99775 * 19 17 15 21 21 H 1.48498 * 109.47186 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47071 * 299.99702 * 19 17 15 23 23 C 1.53000 * 109.47070 * 85.00207 * 11 10 8 24 24 C 1.52995 * 109.47060 * 60.00247 * 23 11 10 25 25 C 1.53000 * 109.47430 * 180.02562 * 23 11 10 26 26 C 1.52999 * 109.47345 * 300.00443 * 23 11 10 27 27 C 1.34812 * 125.83456 * 180.02562 * 2 1 3 28 28 O 1.21817 * 126.29994 * 359.97438 * 27 2 1 29 29 H 1.09001 * 109.46697 * 269.96951 * 1 2 3 30 30 H 1.08998 * 109.46862 * 29.96581 * 1 2 3 31 31 H 1.08996 * 109.47210 * 149.96749 * 1 2 3 32 32 H 1.07999 * 125.58230 * 0.03491 * 3 2 1 33 33 H 1.09004 * 109.46794 * 149.68943 * 6 5 4 34 34 H 1.09000 * 109.47559 * 29.69420 * 6 5 4 35 35 H 1.09004 * 109.47066 * 60.00265 * 7 6 5 36 36 H 1.08994 * 109.47405 * 300.00096 * 7 6 5 37 37 H 0.97000 * 120.00317 * 0.28382 * 10 8 7 38 38 H 1.08999 * 109.47321 * 175.00268 * 13 11 10 39 39 H 1.09000 * 109.47575 * 295.00084 * 13 11 10 40 40 H 0.97004 * 120.00478 * 359.97438 * 14 13 11 41 41 H 0.96994 * 120.00014 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.47411 * 59.99985 * 24 23 11 43 43 H 1.09000 * 109.47406 * 180.02562 * 24 23 11 44 44 H 1.09007 * 109.47038 * 299.99818 * 24 23 11 45 45 H 1.08999 * 109.46883 * 60.00052 * 25 23 11 46 46 H 1.09002 * 109.47256 * 180.02562 * 25 23 11 47 47 H 1.09001 * 109.46796 * 299.99864 * 25 23 11 48 48 H 1.09002 * 109.47553 * 59.99096 * 26 23 11 49 49 H 1.08993 * 109.47851 * 180.02562 * 26 23 11 50 50 H 1.09007 * 109.47197 * 299.99740 * 26 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2692 1.1136 0.0000 4 7 3.5066 0.7352 0.0048 5 7 3.5344 -0.6662 -0.0010 6 6 4.7313 -1.5109 -0.0010 7 6 5.1478 -1.8054 -1.4434 8 6 6.3787 -2.6749 -1.4433 9 8 6.8739 -3.0249 -0.3930 10 7 6.9258 -3.0684 -2.6105 11 6 8.1188 -3.9186 -2.6105 12 1 8.7581 -3.6477 -1.7701 13 6 8.8860 -3.7209 -3.9193 14 7 9.1829 -2.2979 -4.1012 15 6 9.8670 -1.8775 -5.2105 16 1 10.1880 -2.5950 -5.9510 17 6 10.1487 -0.5292 -5.3825 18 7 9.7579 0.3453 -4.4797 19 14 11.0825 0.0442 -6.8954 20 1 10.3199 -0.3216 -8.1159 21 1 11.2535 1.5184 -6.8423 22 1 12.4161 -0.6082 -6.9308 23 6 7.7004 -5.3846 -2.4810 24 6 6.8033 -5.7649 -3.6605 25 6 8.9464 -6.2725 -2.4804 26 6 6.9332 -5.5824 -1.1722 27 6 2.2543 -1.0929 -0.0005 28 8 1.8806 -2.2524 -0.0006 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8903 -0.5133 31 1 -0.3633 -0.8897 -0.5143 32 1 1.9250 2.1373 0.0005 33 1 4.5151 -2.4474 0.5132 34 1 5.5415 -0.9932 0.5126 35 1 5.3640 -0.8689 -1.9576 36 1 4.3378 -2.3232 -1.9570 37 1 6.5297 -2.7887 -3.4506 38 1 9.8182 -4.2847 -3.8829 39 1 8.2797 -4.0750 -4.7530 40 1 8.8943 -1.6533 -3.4363 41 1 9.9545 1.2874 -4.6002 42 1 7.3498 -5.6241 -4.5930 43 1 6.5048 -6.8092 -3.5681 44 1 5.9155 -5.1323 -3.6606 45 1 9.5852 -6.0014 -1.6398 46 1 8.6483 -7.3169 -2.3886 47 1 9.4933 -6.1317 -3.4127 48 1 6.0455 -4.9497 -1.1721 49 1 6.6355 -6.6267 -1.0797 50 1 7.5724 -5.3114 -0.3318 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332838817.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:14 Heat of formation + Delta-G solvation = 15.305683 kcal Electronic energy + Delta-G solvation = -30533.977780 eV Core-core repulsion = 26405.857545 eV Total energy + Delta-G solvation = -4128.120236 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.57142 -40.06142 -37.58325 -37.37540 -35.74637 -34.41298 -33.20650 -32.81135 -31.06978 -29.96552 -27.90660 -27.56661 -27.09275 -26.63600 -24.80806 -23.61380 -22.51254 -21.50007 -21.20457 -20.12380 -18.52505 -17.91896 -17.27869 -16.93456 -16.59436 -16.21055 -15.80332 -15.73393 -15.51570 -14.81622 -14.61390 -14.29994 -14.11698 -13.88330 -13.64975 -13.38836 -13.12361 -13.09243 -12.95836 -12.80250 -12.64056 -12.37055 -12.10702 -12.04194 -11.89993 -11.76686 -11.33191 -11.30356 -11.16385 -11.02941 -10.80034 -10.70912 -10.47048 -10.39311 -10.31283 -10.23183 -9.92150 -9.73675 -9.53172 -8.89060 -8.72526 -8.54225 -6.94459 -5.77867 -3.07371 1.57840 1.77388 2.50353 2.89880 2.94396 3.42432 3.47191 3.48106 3.58203 4.21730 4.49890 4.56332 4.74358 4.80303 4.85166 4.98010 5.01150 5.09653 5.12342 5.14004 5.24829 5.45406 5.54001 5.54154 5.61328 5.74086 5.76411 5.81954 5.83696 5.94044 5.95701 6.06349 6.08220 6.12230 6.16330 6.20511 6.34564 6.35337 6.49850 6.50127 6.54415 6.68184 6.77161 7.00177 7.44658 7.67422 7.87339 7.88501 8.40149 8.55403 9.51780 10.08290 10.43635 11.44335 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.009299 B = 0.003133 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3010.333435 B = 8935.488757 C =11275.225064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.564 5.564 3 C 0.248 3.752 4 N -0.273 5.273 5 N -0.448 5.448 6 C 0.179 3.821 7 C -0.162 4.162 8 C 0.524 3.476 9 O -0.545 6.545 10 N -0.705 5.705 11 C 0.150 3.850 12 H 0.087 0.913 13 C 0.142 3.858 14 N -0.731 5.731 15 C -0.242 4.242 16 H 0.069 0.931 17 C -0.011 4.011 18 N -0.931 5.931 19 Si 0.907 3.093 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.286 1.286 23 C -0.076 4.076 24 C -0.141 4.141 25 C -0.141 4.141 26 C -0.129 4.129 27 C 0.641 3.359 28 O -0.555 6.555 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.093 0.907 37 H 0.404 0.596 38 H 0.035 0.965 39 H 0.028 0.972 40 H 0.385 0.615 41 H 0.256 0.744 42 H 0.062 0.938 43 H 0.049 0.951 44 H 0.052 0.948 45 H 0.055 0.945 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.052 0.948 49 H 0.040 0.960 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.424 -2.598 8.585 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.294 5.294 3 C -0.051 4.051 4 N -0.094 5.094 5 N -0.269 5.269 6 C 0.058 3.942 7 C -0.203 4.203 8 C 0.310 3.690 9 O -0.423 6.423 10 N -0.355 5.355 11 C 0.045 3.955 12 H 0.105 0.895 13 C 0.014 3.986 14 N -0.376 5.376 15 C -0.374 4.374 16 H 0.087 0.913 17 C -0.208 4.208 18 N -0.579 5.579 19 Si 0.738 3.262 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C -0.078 4.078 24 C -0.199 4.199 25 C -0.198 4.198 26 C -0.186 4.186 27 C 0.341 3.659 28 O -0.429 6.429 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.247 0.753 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.123 0.877 36 H 0.112 0.888 37 H 0.238 0.762 38 H 0.052 0.948 39 H 0.046 0.954 40 H 0.220 0.780 41 H 0.065 0.935 42 H 0.081 0.919 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.081 0.919 48 H 0.071 0.929 49 H 0.060 0.940 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -17.199 -3.422 9.186 19.796 hybrid contribution -0.555 0.732 -1.181 1.496 sum -17.754 -2.690 8.006 19.660 Atomic orbital electron populations 1.21801 0.74340 1.04698 1.03428 1.45956 1.08861 1.06774 1.67793 1.25962 0.85864 0.94726 0.98573 1.77095 1.18043 0.92078 1.22158 1.49082 1.06267 1.03100 1.68457 1.21203 0.83166 0.93407 0.96432 1.22034 0.97327 1.01953 0.98981 1.20050 0.84767 0.80005 0.84213 1.90695 1.63521 1.56923 1.31208 1.45905 1.29917 1.51301 1.08399 1.21273 0.85850 0.88064 1.00349 0.89503 1.21094 0.96296 0.88346 0.92890 1.42349 1.68005 1.01271 1.25958 1.19156 1.28032 0.91573 0.98590 0.91277 1.24739 1.01556 0.95984 0.98499 1.69655 1.51407 1.01578 1.35241 0.86278 0.79813 0.77508 0.82600 1.21320 1.21708 1.21290 1.20897 0.96020 0.94873 0.95997 1.21911 0.99414 1.00488 0.98048 1.21885 0.96974 0.98592 1.02379 1.21883 1.00358 0.99800 0.96607 1.16815 0.82211 0.85111 0.81775 1.91091 1.77767 1.15190 1.58816 0.90971 0.89339 0.89461 0.75342 0.87961 0.87637 0.87714 0.88821 0.76155 0.94762 0.95437 0.78049 0.93453 0.91943 0.93235 0.92924 0.92561 0.92936 0.91939 0.92931 0.94047 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.05 59.85 0.66 1.13 16 2 N -0.56 -5.05 3.14 -130.11 -0.41 -5.46 16 3 C 0.25 1.85 12.66 -89.12 -1.13 0.72 16 4 N -0.27 -3.17 12.53 29.87 0.37 -2.79 16 5 N -0.45 -5.91 3.63 -65.13 -0.24 -6.15 16 6 C 0.18 2.40 5.68 -4.05 -0.02 2.38 16 7 C -0.16 -2.17 6.02 -27.88 -0.17 -2.34 16 8 C 0.52 8.26 6.19 -10.98 -0.07 8.20 16 9 O -0.55 -9.78 13.10 5.55 0.07 -9.71 16 10 N -0.71 -11.15 3.64 -53.81 -0.20 -11.35 16 11 C 0.15 2.50 1.69 -67.93 -0.11 2.38 16 12 H 0.09 1.66 7.58 -51.93 -0.39 1.27 16 13 C 0.14 2.72 5.10 -4.05 -0.02 2.70 16 14 N -0.73 -17.91 5.43 -59.92 -0.33 -18.24 16 15 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 16 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 17 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 18 N -0.93 -27.78 13.06 55.49 0.72 -27.05 16 19 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 23 C -0.08 -1.07 0.62 -154.51 -0.10 -1.17 16 24 C -0.14 -1.82 7.97 37.15 0.30 -1.53 16 25 C -0.14 -1.83 8.12 37.16 0.30 -1.53 16 26 C -0.13 -1.86 7.00 37.16 0.26 -1.60 16 27 C 0.64 8.63 8.60 -86.74 -0.75 7.89 16 28 O -0.55 -9.22 17.71 5.08 0.09 -9.13 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.13 8.14 -51.93 -0.42 -0.29 16 31 H 0.09 0.51 8.08 -51.93 -0.42 0.09 16 32 H 0.23 0.43 8.06 -52.49 -0.42 0.01 16 33 H 0.10 1.42 8.07 -51.93 -0.42 1.00 16 34 H 0.11 1.43 8.10 -51.93 -0.42 1.01 16 35 H 0.10 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 37 H 0.40 6.20 8.60 -40.82 -0.35 5.85 16 38 H 0.03 0.67 6.71 -51.93 -0.35 0.33 16 39 H 0.03 0.52 6.17 -51.93 -0.32 0.20 16 40 H 0.39 10.10 7.33 -40.82 -0.30 9.80 16 41 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 42 H 0.06 0.82 6.32 -51.93 -0.33 0.50 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.05 0.68 7.60 -51.93 -0.39 0.28 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.06 0.82 6.54 -51.93 -0.34 0.48 16 48 H 0.05 0.80 5.77 -51.93 -0.30 0.50 16 49 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.06 0.98 7.53 -51.92 -0.39 0.58 16 LS Contribution 403.05 15.07 6.07 6.07 Total: -1.00 -35.86 403.05 -8.02 -43.88 By element: Atomic # 1 Polarization: 20.81 SS G_CDS: -8.08 Total: 12.73 kcal Atomic # 6 Polarization: 11.13 SS G_CDS: -1.09 Total: 10.04 kcal Atomic # 7 Polarization: -70.97 SS G_CDS: -0.07 Total: -71.04 kcal Atomic # 8 Polarization: -19.00 SS G_CDS: 0.16 Total: -18.84 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -35.86 -8.02 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332838817.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.189 kcal (2) G-P(sol) polarization free energy of solvation -35.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds