Wall clock time and date at job start Sat Apr 11 2020 05:49:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86800 * 120.00238 * 2 1 4 4 H 1.48505 * 109.46983 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47007 * 299.99737 * 3 2 1 6 6 H 1.48497 * 109.47126 * 60.00051 * 3 2 1 7 7 C 1.37878 * 119.99899 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00447 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99848 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.47308 * 180.02562 * 9 7 2 11 11 C 1.52991 * 109.47114 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46829 * 180.02562 * 11 10 9 13 13 C 1.50705 * 109.46994 * 180.02562 * 12 11 10 14 14 O 1.21283 * 119.99889 * 354.76472 * 13 12 11 15 15 N 1.34772 * 120.00039 * 174.77416 * 13 12 11 16 16 C 1.46941 * 120.64458 * 5.30161 * 15 13 12 17 17 C 1.53096 * 108.78215 * 126.49960 * 16 15 13 18 18 C 1.53091 * 109.47309 * 294.32097 * 17 16 15 19 19 C 1.53106 * 109.15402 * 297.03300 * 18 17 16 20 20 O 1.42908 * 109.40426 * 302.50490 * 19 18 17 21 21 C 1.42910 * 114.13273 * 61.18152 * 20 19 18 22 22 C 1.53083 * 109.47484 * 174.65376 * 17 16 15 23 23 C 1.52932 * 109.49672 * 54.47359 * 17 16 15 24 24 C 1.53046 * 109.55708 * 298.82690 * 23 17 16 25 25 C 1.46933 * 120.64585 * 185.03337 * 15 13 12 26 26 H 1.08996 * 109.58918 * 113.86154 * 25 15 13 27 27 C 1.53005 * 109.57795 * 353.44799 * 25 15 13 28 28 O 1.42900 * 109.47525 * 294.87838 * 27 25 15 29 29 H 0.97006 * 119.99797 * 0.02562 * 1 2 3 30 30 H 1.08996 * 109.47575 * 300.00487 * 9 7 2 31 31 H 1.09000 * 109.46895 * 60.00275 * 9 7 2 32 32 H 1.09004 * 109.46802 * 300.00709 * 10 9 7 33 33 H 1.09000 * 109.47058 * 60.00204 * 10 9 7 34 34 H 1.09006 * 109.47086 * 299.99636 * 11 10 9 35 35 H 1.09000 * 109.47305 * 59.99971 * 11 10 9 36 36 H 1.08997 * 109.47042 * 299.99491 * 12 11 10 37 37 H 1.09000 * 109.47406 * 59.99782 * 12 11 10 38 38 H 1.08999 * 109.58881 * 246.28716 * 16 15 13 39 39 H 1.09001 * 109.58645 * 6.56885 * 16 15 13 40 40 H 1.09001 * 109.51944 * 56.93138 * 18 17 16 41 41 H 1.08992 * 109.52342 * 177.12413 * 18 17 16 42 42 H 1.08999 * 109.48189 * 182.53187 * 19 18 17 43 43 H 1.08997 * 109.50241 * 62.49249 * 19 18 17 44 44 H 1.08999 * 109.48309 * 178.84414 * 21 20 19 45 45 H 1.08998 * 109.49755 * 58.80439 * 21 20 19 46 46 H 1.08996 * 109.52382 * 182.86700 * 22 17 16 47 47 H 1.09005 * 109.52129 * 303.06184 * 22 17 16 48 48 H 1.08996 * 109.45289 * 58.85396 * 23 17 16 49 49 H 1.09002 * 109.45580 * 178.81823 * 23 17 16 50 50 H 1.09003 * 109.49753 * 181.17160 * 24 23 17 51 51 H 1.08997 * 109.50179 * 301.24158 * 24 23 17 52 52 H 1.08996 * 109.46777 * 54.88382 * 27 25 15 53 53 H 1.08999 * 109.46370 * 174.88013 * 27 25 15 54 54 H 0.96701 * 114.00146 * 175.05739 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0005 11 6 1.4800 -4.9871 -0.0012 12 6 2.4742 -6.1501 -0.0005 13 6 1.7206 -7.4552 -0.0018 14 8 0.5115 -7.4573 0.0927 15 7 2.3903 -8.6199 -0.1078 16 6 3.8596 -8.6419 -0.1063 17 6 4.3369 -9.6148 0.9750 18 6 3.9451 -9.0776 2.3540 19 6 4.6605 -7.7458 2.5961 20 8 6.0723 -7.9383 2.4856 21 6 6.5011 -8.3935 1.2006 22 6 5.8599 -9.7516 0.9023 23 6 3.6879 -10.9819 0.7542 24 6 2.1667 -10.8496 0.8587 25 6 1.6655 -9.8930 -0.2212 26 1 1.8450 -10.3294 -1.2037 27 6 0.1671 -9.6485 -0.0315 28 8 -0.0768 -9.1963 1.3019 29 1 -0.4850 0.8401 -0.0004 30 1 0.6245 -2.5571 0.8896 31 1 0.6239 -2.5567 -0.8903 32 1 2.8718 -3.6044 -0.8905 33 1 2.8717 -3.6045 0.8895 34 1 0.8530 -5.0451 0.8887 35 1 0.8536 -5.0445 -0.8914 36 1 3.1014 -6.0923 -0.8901 37 1 3.1003 -6.0924 0.8899 38 1 4.2211 -8.9720 -1.0802 39 1 4.2398 -7.6424 0.1049 40 1 2.8666 -8.9239 2.3919 41 1 4.2391 -9.7939 3.1210 42 1 4.4206 -7.3805 3.5946 43 1 4.3339 -7.0171 1.8542 44 1 7.5863 -8.4947 1.1943 45 1 6.1986 -7.6737 0.4401 46 1 6.1955 -10.4824 1.6379 47 1 6.1489 -10.0793 -0.0964 48 1 3.9529 -11.3539 -0.2355 49 1 4.0443 -11.6797 1.5119 50 1 1.7062 -11.8281 0.7218 51 1 1.9022 -10.4572 1.8405 52 1 -0.1699 -8.8912 -0.7393 53 1 -0.3773 -10.5766 -0.2057 54 1 -0.9962 -8.9491 1.4715 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336635277.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:27 Heat of formation + Delta-G solvation = -162.232829 kcal Electronic energy + Delta-G solvation = -32161.519445 eV Core-core repulsion = 28096.948154 eV Total energy + Delta-G solvation = -4064.571291 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.19658 -40.34102 -38.29244 -37.23324 -36.52061 -34.73873 -34.63454 -33.48978 -32.08496 -31.31950 -29.64905 -27.75850 -26.85766 -25.81043 -24.57895 -24.48954 -23.14759 -22.11162 -21.56823 -20.46422 -19.31670 -18.46435 -18.32570 -17.74680 -17.18301 -17.14085 -16.68048 -16.57309 -16.46282 -15.98974 -15.70325 -15.37597 -15.28304 -14.99680 -14.75992 -14.62561 -14.48991 -14.26815 -14.03058 -13.60359 -13.47715 -13.40424 -13.20965 -13.03793 -12.90512 -12.85841 -12.46251 -12.33394 -12.30375 -12.24378 -12.15048 -11.94482 -11.81807 -11.58304 -11.41213 -11.33206 -11.19879 -11.10181 -11.05010 -10.81295 -10.56210 -10.29127 -9.99644 -9.38201 -8.19331 -6.31271 1.39871 1.40785 1.54303 1.74043 2.02408 2.41475 3.00146 3.13449 3.35994 3.55206 3.65101 3.73021 3.82558 3.97269 3.98290 4.03145 4.09717 4.13805 4.17541 4.19908 4.31774 4.40505 4.54418 4.57203 4.61073 4.66219 4.67402 4.71131 4.76182 4.78124 4.81888 4.84913 4.88904 4.89860 4.96630 5.03009 5.12033 5.12769 5.18242 5.21014 5.23598 5.30846 5.35387 5.37451 5.51501 5.55531 5.70261 5.76843 5.87064 6.25097 6.30790 6.47630 6.86916 6.96921 7.34711 7.38301 8.93068 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.012996 B = 0.002852 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.994509 B = 9815.064682 C =11407.053661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.006 4.006 3 Si 0.968 3.032 4 H -0.258 1.258 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.064 0.936 9 C 0.021 3.979 10 C -0.096 4.096 11 C -0.088 4.088 12 C -0.132 4.132 13 C 0.512 3.488 14 O -0.547 6.547 15 N -0.602 5.602 16 C 0.106 3.894 17 C -0.068 4.068 18 C -0.137 4.137 19 C 0.054 3.946 20 O -0.401 6.401 21 C 0.046 3.954 22 C -0.134 4.134 23 C -0.101 4.101 24 C -0.124 4.124 25 C 0.143 3.857 26 H 0.101 0.899 27 C 0.082 3.918 28 O -0.571 6.571 29 H 0.263 0.737 30 H -0.016 1.016 31 H -0.014 1.014 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.042 0.958 35 H 0.046 0.954 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.062 0.938 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.050 0.950 44 H 0.107 0.893 45 H 0.057 0.943 46 H 0.076 0.924 47 H 0.100 0.900 48 H 0.083 0.917 49 H 0.073 0.927 50 H 0.083 0.917 51 H 0.057 0.943 52 H 0.051 0.949 53 H 0.047 0.953 54 H 0.378 0.622 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.383 -29.099 -0.704 31.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.203 1.203 6 H -0.205 1.205 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.016 4.016 10 C -0.133 4.133 11 C -0.127 4.127 12 C -0.172 4.172 13 C 0.301 3.699 14 O -0.425 6.425 15 N -0.336 5.336 16 C -0.016 4.016 17 C -0.069 4.069 18 C -0.174 4.174 19 C -0.023 4.023 20 O -0.320 6.320 21 C -0.030 4.030 22 C -0.172 4.172 23 C -0.138 4.138 24 C -0.162 4.162 25 C 0.041 3.959 26 H 0.118 0.882 27 C 0.004 3.996 28 O -0.377 6.377 29 H 0.072 0.928 30 H 0.002 0.998 31 H 0.005 0.995 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.064 0.936 36 H 0.126 0.874 37 H 0.117 0.883 38 H 0.112 0.888 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.125 0.875 45 H 0.076 0.924 46 H 0.095 0.905 47 H 0.118 0.882 48 H 0.102 0.898 49 H 0.091 0.909 50 H 0.102 0.898 51 H 0.076 0.924 52 H 0.069 0.931 53 H 0.065 0.935 54 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 12.365 -29.089 -0.458 31.612 hybrid contribution -1.183 1.262 -0.014 1.730 sum 11.182 -27.827 -0.472 29.994 Atomic orbital electron populations 1.70133 1.08011 1.27677 1.51909 1.26071 0.95787 1.03659 0.94772 0.85351 0.79194 0.78478 0.77734 1.18180 1.20338 1.20475 1.21772 0.93683 0.92267 1.50192 0.91759 1.19027 0.94575 0.93628 0.94330 1.21448 0.97867 0.93063 1.00969 1.21182 0.97239 0.93203 1.01039 1.21765 0.99167 0.91187 1.05049 1.20798 0.87812 0.85843 0.75451 1.90610 1.15656 1.86854 1.49429 1.48004 1.07085 1.05441 1.73020 1.22121 0.78421 1.01174 0.99854 1.20860 0.95966 0.96111 0.93980 1.22135 1.00353 0.97507 0.97454 1.22704 0.81034 0.96442 1.02086 1.87924 1.22555 1.87334 1.34210 1.22876 1.00528 0.94907 0.84711 1.22167 0.92695 0.98131 1.04196 1.21532 0.93785 0.95229 1.03275 1.21789 0.96502 0.98908 0.99003 1.21426 0.90543 0.84015 0.99938 0.88166 1.22317 0.94728 0.96535 0.85980 1.86366 1.33537 1.87935 1.29877 0.92837 0.99762 0.99532 0.92219 0.92650 0.93871 0.93552 0.87380 0.88291 0.88847 0.89586 0.91912 0.91259 0.89539 0.93209 0.87504 0.92443 0.90526 0.88195 0.89796 0.90872 0.89840 0.92381 0.93059 0.93522 0.77410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.21 13.29 21.45 0.28 -58.92 16 2 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 3 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 4 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 5 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 7 C -0.54 -31.77 9.11 25.60 0.23 -31.54 16 8 H 0.06 3.57 7.74 -2.91 -0.02 3.54 16 9 C 0.02 1.20 4.97 29.85 0.15 1.34 16 10 C -0.10 -4.03 5.15 30.59 0.16 -3.87 16 11 C -0.09 -3.27 4.52 30.59 0.14 -3.13 16 12 C -0.13 -3.55 4.06 29.85 0.12 -3.43 16 13 C 0.51 14.05 7.40 87.66 0.65 14.70 16 14 O -0.55 -18.60 10.33 20.64 0.21 -18.38 16 15 N -0.60 -11.91 2.38 -796.01 -1.90 -13.81 16 16 C 0.11 1.49 4.38 86.33 0.38 1.87 16 17 C -0.07 -0.85 0.52 -52.11 -0.03 -0.88 16 18 C -0.14 -2.41 4.37 30.66 0.13 -2.27 16 19 C 0.05 1.06 6.57 72.02 0.47 1.53 16 20 O -0.40 -8.05 10.76 -148.98 -1.60 -9.65 16 21 C 0.05 0.59 6.57 72.02 0.47 1.06 16 22 C -0.13 -1.26 4.92 30.66 0.15 -1.11 16 23 C -0.10 -1.06 4.72 30.59 0.14 -0.91 16 24 C -0.12 -1.81 4.90 30.52 0.15 -1.66 16 25 C 0.14 2.50 3.27 44.82 0.15 2.65 16 26 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 27 C 0.08 1.79 5.80 71.98 0.42 2.21 16 28 O -0.57 -14.81 10.27 -125.30 -1.29 -16.10 16 29 H 0.26 15.50 8.31 -92.70 -0.77 14.73 16 30 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 31 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 32 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 34 H 0.04 1.76 8.04 -2.38 -0.02 1.74 16 35 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.11 2.40 7.91 -2.39 -0.02 2.38 16 37 H 0.10 2.43 5.72 -2.39 -0.01 2.42 16 38 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.09 1.28 3.12 -2.39 -0.01 1.28 16 40 H 0.06 1.41 6.11 -2.39 -0.01 1.40 16 41 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.09 1.77 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.00 4.44 -2.39 -0.01 0.99 16 44 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.06 0.68 6.74 -2.39 -0.02 0.67 16 46 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 47 H 0.10 0.51 8.14 -2.38 -0.02 0.49 16 48 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 50 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 51 H 0.06 1.18 5.64 -2.39 -0.01 1.17 16 52 H 0.05 1.39 6.02 -3.72 -0.02 1.37 16 53 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 54 H 0.38 8.47 9.12 -74.06 -0.68 7.79 16 Total: -1.00 -75.33 393.76 2.29 -73.04 By element: Atomic # 1 Polarization: 19.70 SS G_CDS: 0.21 Total: 19.90 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: 4.35 Total: -23.31 kcal Atomic # 7 Polarization: -71.12 SS G_CDS: -1.61 Total: -72.73 kcal Atomic # 8 Polarization: -41.45 SS G_CDS: -2.68 Total: -44.13 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -75.33 2.29 -73.04 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336635277.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.195 kcal (2) G-P(sol) polarization free energy of solvation -75.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds