Wall clock time and date at job start Sat Apr 11 2020 05:49:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34235 * 117.00324 * 2 1 4 4 O 1.20825 * 119.99588 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99903 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.67225 * 59.30223 * 5 3 2 7 7 C 1.54882 * 110.91604 * 295.95467 * 5 3 2 8 8 C 1.54267 * 104.19639 * 203.67284 * 7 5 3 9 9 C 1.53882 * 106.59890 * 23.60662 * 8 7 5 10 10 H 1.08996 * 110.02991 * 240.71523 * 9 8 7 11 11 N 1.46503 * 110.03040 * 119.28461 * 9 8 7 12 12 C 1.34773 * 119.99733 * 87.83327 * 11 9 8 13 13 O 1.21588 * 120.00553 * 0.02562 * 12 11 9 14 14 N 1.34786 * 119.99957 * 180.02562 * 12 11 9 15 15 C 1.46494 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.53041 * 109.45975 * 275.06654 * 15 14 12 17 17 C 1.53191 * 109.31262 * 178.61566 * 16 15 14 18 18 N 1.46936 * 108.77668 * 54.63812 * 17 16 15 19 19 C 1.36935 * 120.63389 * 126.41131 * 18 17 16 20 20 H 1.08001 * 119.99900 * 331.80582 * 19 18 17 21 21 C 1.38808 * 120.00035 * 151.80434 * 19 18 17 22 22 N 1.31624 * 120.00111 * 343.09294 * 21 19 18 23 23 Si 1.86794 * 120.00220 * 163.08460 * 21 19 18 24 24 H 1.48503 * 109.47001 * 60.00000 * 23 21 19 25 25 H 1.48491 * 109.47382 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47321 * 300.00633 * 23 21 19 27 27 C 1.46923 * 118.73131 * 306.38719 * 18 17 16 28 28 C 1.53047 * 109.45979 * 154.99765 * 15 14 12 29 29 C 1.54260 * 106.59696 * 0.02562 * 9 8 7 30 30 H 1.09001 * 109.47576 * 300.00205 * 1 2 3 31 31 H 1.09006 * 109.47087 * 59.99932 * 1 2 3 32 32 H 1.08998 * 109.47489 * 179.97438 * 1 2 3 33 33 H 1.08997 * 110.48797 * 322.34534 * 7 5 3 34 34 H 1.08998 * 110.48738 * 84.99444 * 7 5 3 35 35 H 1.08998 * 110.03352 * 264.32533 * 8 7 5 36 36 H 1.09000 * 110.07586 * 142.91463 * 8 7 5 37 37 H 0.97002 * 119.99899 * 267.84034 * 11 9 8 38 38 H 0.96994 * 119.99623 * 359.97438 * 14 12 11 39 39 H 1.09008 * 109.46588 * 35.02619 * 15 14 12 40 40 H 1.08999 * 109.49650 * 298.56810 * 16 15 14 41 41 H 1.09000 * 109.49667 * 58.66450 * 16 15 14 42 42 H 1.09000 * 109.59103 * 294.84694 * 17 16 15 43 43 H 1.09009 * 109.70290 * 174.49009 * 17 16 15 44 44 H 0.96997 * 119.99849 * 180.02562 * 22 21 19 45 45 H 1.08993 * 109.59137 * 293.81943 * 27 18 17 46 46 H 1.09005 * 109.58533 * 173.39656 * 27 18 17 47 47 H 1.08998 * 109.49634 * 301.33794 * 28 15 14 48 48 H 1.09001 * 109.49318 * 61.43534 * 28 15 14 49 49 H 1.08999 * 110.49059 * 217.71085 * 29 9 8 50 50 H 1.09002 * 110.49436 * 95.06173 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9781 0.7748 -0.8760 7 6 4.1511 0.6716 1.3018 8 6 5.5323 1.3440 1.4431 9 6 5.4609 2.6645 0.6563 10 1 6.1995 2.6619 -0.1453 11 7 5.6983 3.7973 1.5545 12 6 6.9562 4.2229 1.7844 13 8 7.8941 3.6671 1.2460 14 7 7.1747 5.2647 2.6112 15 6 8.5421 5.7276 2.8606 16 6 9.1661 4.8938 3.9820 17 6 10.6072 5.3576 4.2163 18 7 10.6027 6.8047 4.4713 19 6 11.1979 7.3174 5.5929 20 1 11.2668 6.7189 6.4892 21 6 11.7128 8.6064 5.5778 22 7 11.9357 9.2127 4.4309 23 14 12.0890 9.4808 7.1850 24 1 13.0961 8.7012 7.9487 25 1 12.6249 10.8355 6.8978 26 1 10.8445 9.6008 7.9863 27 6 9.9479 7.6910 3.4995 28 6 8.5142 7.2012 3.2732 29 6 4.0386 2.7488 0.0649 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.5181 0.9176 2.1544 34 1 4.2607 -0.4086 1.2059 35 1 6.3055 0.7006 1.0232 36 1 5.7445 1.5459 2.4930 37 1 4.9501 4.2409 1.9839 38 1 6.4266 5.7083 3.0404 39 1 9.1347 5.6160 1.9525 40 1 8.5884 5.0245 4.8970 41 1 9.1643 3.8417 3.6971 42 1 11.2081 5.1442 3.3324 43 1 11.0256 4.8362 5.0773 44 1 12.2958 10.1132 4.4204 45 1 10.4951 7.6679 2.5572 46 1 9.9290 8.7091 3.8885 47 1 8.0484 7.7912 2.4839 48 1 7.9427 7.3100 4.1949 49 1 4.0659 3.1841 -0.9340 50 1 3.3877 3.3302 0.7179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339835075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:34 Heat of formation + Delta-G solvation = -104.181781 kcal Electronic energy + Delta-G solvation = -29586.890028 eV Core-core repulsion = 25421.295676 eV Total energy + Delta-G solvation = -4165.594352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.12801 -40.07746 -38.40273 -37.25739 -36.72722 -34.32216 -33.80689 -32.00116 -30.16888 -29.75541 -29.35510 -28.61448 -27.37225 -24.89950 -23.11314 -22.36857 -22.06666 -20.97037 -20.50333 -20.26649 -19.38359 -18.18381 -18.06130 -17.23753 -16.93952 -16.67172 -16.20508 -15.81277 -14.97922 -14.79885 -14.66675 -14.29458 -14.10713 -13.83895 -13.64762 -13.50999 -13.46593 -12.98730 -12.76154 -12.71001 -12.52705 -12.31661 -12.17092 -11.92643 -11.67064 -11.42211 -11.38681 -11.25444 -11.08688 -10.99071 -10.81232 -10.74781 -10.69807 -10.46491 -10.24986 -10.01267 -9.98352 -9.72139 -9.50922 -9.15359 -8.57086 -8.40998 -6.65794 -5.77537 -3.19623 1.74573 2.21422 2.83669 3.38130 3.39553 3.45229 3.46349 3.90195 4.06846 4.29230 4.47355 4.51227 4.62451 4.66459 4.71794 4.87470 4.95830 5.02493 5.07071 5.07615 5.17591 5.36613 5.42065 5.44435 5.54215 5.61199 5.64979 5.73515 5.85805 5.88432 5.93978 5.95013 6.11987 6.32678 6.39930 6.50638 6.54536 6.61626 6.64936 6.83739 6.94320 7.02531 7.15130 7.28673 7.35031 7.64409 7.80895 8.18404 8.46890 8.79486 9.22942 9.86263 10.43591 11.31366 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033863 B = 0.001758 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.659625 B =15920.237651 C =16040.534015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.469 3.531 4 O -0.505 6.505 5 C -0.088 4.088 6 H 0.120 0.880 7 C -0.109 4.109 8 C -0.136 4.136 9 C 0.162 3.838 10 H 0.097 0.903 11 N -0.747 5.747 12 C 0.702 3.298 13 O -0.590 6.590 14 N -0.740 5.740 15 C 0.169 3.831 16 C -0.139 4.139 17 C 0.147 3.853 18 N -0.592 5.592 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.283 1.283 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.175 3.825 28 C -0.146 4.146 29 C -0.114 4.114 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.394 0.606 38 H 0.391 0.609 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.054 0.946 42 H 0.020 0.980 43 H 0.055 0.945 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.091 0.909 47 H 0.053 0.947 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.575 -17.384 -9.219 29.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.393 6.393 5 C -0.107 4.107 6 H 0.138 0.862 7 C -0.147 4.147 8 C -0.175 4.175 9 C 0.056 3.944 10 H 0.115 0.885 11 N -0.403 5.403 12 C 0.402 3.598 13 O -0.468 6.468 14 N -0.393 5.393 15 C 0.065 3.935 16 C -0.179 4.179 17 C 0.020 3.980 18 N -0.315 5.315 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.197 4.197 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.209 1.209 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.048 3.952 28 C -0.186 4.186 29 C -0.152 4.152 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.228 0.772 38 H 0.223 0.777 39 H 0.099 0.901 40 H 0.075 0.925 41 H 0.073 0.927 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.109 0.891 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.102 0.898 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.807 -17.414 -9.741 29.558 hybrid contribution -0.867 0.951 1.182 1.747 sum -22.673 -16.463 -8.559 29.298 Atomic orbital electron populations 1.23290 0.76247 1.03805 1.02625 1.86519 1.23485 1.33442 1.83974 1.23662 0.91845 0.81311 0.71973 1.90682 1.67141 1.36380 1.45058 1.22024 0.86849 0.99383 1.02478 0.86247 1.22339 0.96620 1.00769 0.94922 1.22653 0.96387 0.96458 1.02009 1.21355 0.96200 0.84796 0.92069 0.88472 1.45308 1.06952 1.36295 1.51708 1.16036 0.83104 0.80713 0.79974 1.90916 1.41620 1.59487 1.54781 1.45561 1.10271 1.34096 1.49341 1.20902 0.79944 0.94036 0.98601 1.22383 0.99309 0.98460 0.97756 1.20881 0.92280 0.86400 0.98401 1.44083 1.63091 1.00049 1.24296 1.19149 1.31370 0.98303 0.89373 0.91721 1.25050 0.98619 0.99429 0.96560 1.70018 1.47166 1.14026 1.23569 0.86364 0.78109 0.78849 0.83406 1.20889 1.21657 1.21104 1.20742 0.86041 0.96146 0.92265 1.22546 1.02573 0.93475 1.00042 1.22592 0.95588 0.93980 1.03044 0.91832 0.91854 0.87995 0.91074 0.89984 0.90360 0.90452 0.77245 0.77654 0.90101 0.92531 0.92721 0.96177 0.92641 0.93568 0.96081 0.89078 0.92795 0.92273 0.89838 0.89478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 10.56 101.05 1.07 1.24 16 2 O -0.36 -2.66 10.56 -39.27 -0.41 -3.08 16 3 C 0.47 3.91 7.27 36.01 0.26 4.17 16 4 O -0.51 -5.58 15.51 -18.75 -0.29 -5.87 16 5 C -0.09 -0.56 3.39 -89.77 -0.30 -0.87 16 6 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 7 C -0.11 -0.67 6.27 -25.08 -0.16 -0.83 16 8 C -0.14 -1.10 6.59 -25.61 -0.17 -1.27 16 9 C 0.16 1.45 3.25 -66.81 -0.22 1.24 16 10 H 0.10 1.04 7.56 -51.93 -0.39 0.64 16 11 N -0.75 -7.67 4.99 -57.58 -0.29 -7.96 16 12 C 0.70 10.25 8.53 -86.91 -0.74 9.51 16 13 O -0.59 -11.07 15.66 5.29 0.08 -10.98 16 14 N -0.74 -10.42 5.08 -58.63 -0.30 -10.72 16 15 C 0.17 2.98 2.41 -67.89 -0.16 2.81 16 16 C -0.14 -2.57 5.65 -26.61 -0.15 -2.72 16 17 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 18 N -0.59 -14.87 2.99 -172.31 -0.52 -15.39 16 19 C -0.25 -6.92 9.58 -15.06 -0.14 -7.06 16 20 H 0.07 1.74 7.89 -52.49 -0.41 1.33 16 21 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 22 N -0.90 -26.12 11.20 55.49 0.62 -25.50 16 23 Si 0.90 21.60 29.59 -169.99 -5.03 16.57 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 C 0.17 4.12 5.30 -3.71 -0.02 4.10 16 28 C -0.15 -2.69 5.55 -26.61 -0.15 -2.84 16 29 C -0.11 -0.83 5.58 -25.06 -0.14 -0.97 16 30 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 31 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 32 H 0.10 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 34 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.73 7.92 -51.93 -0.41 0.32 16 37 H 0.39 3.10 8.37 -40.82 -0.34 2.76 16 38 H 0.39 4.41 8.62 -40.82 -0.35 4.06 16 39 H 0.08 1.62 7.58 -51.92 -0.39 1.23 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 1.18 7.93 -51.92 -0.41 0.77 16 44 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 2.38 6.06 -51.93 -0.31 2.07 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.09 0.68 7.09 -51.93 -0.37 0.32 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -33.85 399.45 -9.69 -43.54 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.45 Total: 3.70 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: -1.14 Total: 9.66 kcal Atomic # 7 Polarization: -59.08 SS G_CDS: -0.48 Total: -59.56 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.62 Total: -19.93 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.03 Total: 16.57 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.85 -9.69 -43.54 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339835075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.641 kcal (2) G-P(sol) polarization free energy of solvation -33.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds