Wall clock time and date at job start Sat Apr 11 2020 05:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34235 * 117.00324 * 2 1 4 4 O 1.20825 * 119.99588 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99903 * 179.97438 * 3 2 1 6 6 H 1.08996 * 110.67225 * 59.30223 * 5 3 2 7 7 C 1.54882 * 110.91604 * 295.95467 * 5 3 2 8 8 C 1.54267 * 104.19639 * 203.67284 * 7 5 3 9 9 C 1.53882 * 106.59890 * 23.60662 * 8 7 5 10 10 H 1.08996 * 110.02991 * 240.71523 * 9 8 7 11 11 N 1.46503 * 110.03040 * 119.28461 * 9 8 7 12 12 C 1.34773 * 119.99733 * 87.83327 * 11 9 8 13 13 O 1.21588 * 120.00553 * 0.02562 * 12 11 9 14 14 N 1.34786 * 119.99957 * 180.02562 * 12 11 9 15 15 C 1.46494 * 119.99872 * 180.02562 * 14 12 11 16 16 C 1.53041 * 109.45975 * 275.06654 * 15 14 12 17 17 C 1.53191 * 109.31262 * 178.61566 * 16 15 14 18 18 N 1.46936 * 108.77668 * 54.63812 * 17 16 15 19 19 C 1.36935 * 120.63389 * 126.41131 * 18 17 16 20 20 H 1.08001 * 119.99900 * 331.80582 * 19 18 17 21 21 C 1.38808 * 120.00035 * 151.80434 * 19 18 17 22 22 N 1.31624 * 120.00111 * 343.09294 * 21 19 18 23 23 Si 1.86794 * 120.00220 * 163.08460 * 21 19 18 24 24 H 1.48503 * 109.47001 * 60.00000 * 23 21 19 25 25 H 1.48491 * 109.47382 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.47321 * 300.00633 * 23 21 19 27 27 C 1.46923 * 118.73131 * 306.38719 * 18 17 16 28 28 C 1.53047 * 109.45979 * 154.99765 * 15 14 12 29 29 C 1.54260 * 106.59696 * 0.02562 * 9 8 7 30 30 H 1.09001 * 109.47576 * 300.00205 * 1 2 3 31 31 H 1.09006 * 109.47087 * 59.99932 * 1 2 3 32 32 H 1.08998 * 109.47489 * 179.97438 * 1 2 3 33 33 H 1.08997 * 110.48797 * 322.34534 * 7 5 3 34 34 H 1.08998 * 110.48738 * 84.99444 * 7 5 3 35 35 H 1.08998 * 110.03352 * 264.32533 * 8 7 5 36 36 H 1.09000 * 110.07586 * 142.91463 * 8 7 5 37 37 H 0.97002 * 119.99899 * 267.84034 * 11 9 8 38 38 H 0.96994 * 119.99623 * 359.97438 * 14 12 11 39 39 H 1.09008 * 109.46588 * 35.02619 * 15 14 12 40 40 H 1.08999 * 109.49650 * 298.56810 * 16 15 14 41 41 H 1.09000 * 109.49667 * 58.66450 * 16 15 14 42 42 H 1.09000 * 109.59103 * 294.84694 * 17 16 15 43 43 H 1.09009 * 109.70290 * 174.49009 * 17 16 15 44 44 H 0.96997 * 119.99849 * 180.02562 * 22 21 19 45 45 H 1.08993 * 109.59137 * 293.81943 * 27 18 17 46 46 H 1.09005 * 109.58533 * 173.39656 * 27 18 17 47 47 H 1.08998 * 109.49634 * 301.33794 * 28 15 14 48 48 H 1.09001 * 109.49318 * 61.43534 * 28 15 14 49 49 H 1.08999 * 110.49059 * 217.71085 * 29 9 8 50 50 H 1.09002 * 110.49436 * 95.06173 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 1 3.9781 0.7748 -0.8760 7 6 4.1511 0.6716 1.3018 8 6 5.5323 1.3440 1.4431 9 6 5.4609 2.6645 0.6563 10 1 6.1995 2.6619 -0.1453 11 7 5.6983 3.7973 1.5545 12 6 6.9562 4.2229 1.7844 13 8 7.8941 3.6671 1.2460 14 7 7.1747 5.2647 2.6112 15 6 8.5421 5.7276 2.8606 16 6 9.1661 4.8938 3.9820 17 6 10.6072 5.3576 4.2163 18 7 10.6027 6.8047 4.4713 19 6 11.1979 7.3174 5.5929 20 1 11.2668 6.7189 6.4892 21 6 11.7128 8.6064 5.5778 22 7 11.9357 9.2127 4.4309 23 14 12.0890 9.4808 7.1850 24 1 13.0961 8.7012 7.9487 25 1 12.6249 10.8355 6.8978 26 1 10.8445 9.6008 7.9863 27 6 9.9479 7.6910 3.4995 28 6 8.5142 7.2012 3.2732 29 6 4.0386 2.7488 0.0649 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 3.5181 0.9176 2.1544 34 1 4.2607 -0.4086 1.2059 35 1 6.3055 0.7006 1.0232 36 1 5.7445 1.5459 2.4930 37 1 4.9501 4.2409 1.9839 38 1 6.4266 5.7083 3.0404 39 1 9.1347 5.6160 1.9525 40 1 8.5884 5.0245 4.8970 41 1 9.1643 3.8417 3.6971 42 1 11.2081 5.1442 3.3324 43 1 11.0256 4.8362 5.0773 44 1 12.2958 10.1132 4.4204 45 1 10.4951 7.6679 2.5572 46 1 9.9290 8.7091 3.8885 47 1 8.0484 7.7912 2.4839 48 1 7.9427 7.3100 4.1949 49 1 4.0659 3.1841 -0.9340 50 1 3.3877 3.3302 0.7179 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339835075.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:33 Heat of formation + Delta-G solvation = -126.298148 kcal Electronic energy + Delta-G solvation = -29587.849066 eV Core-core repulsion = 25421.295676 eV Total energy + Delta-G solvation = -4166.553390 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78125 -41.17238 -39.45663 -38.55084 -37.42517 -35.92214 -34.81448 -33.74178 -31.77878 -31.17999 -30.25104 -29.34094 -28.00797 -26.73939 -24.05975 -23.79125 -23.56947 -22.09278 -21.26121 -21.13279 -20.88992 -19.34878 -18.82143 -18.53466 -17.86758 -17.51929 -17.19640 -16.84496 -16.54794 -15.96461 -15.83604 -15.61241 -15.34350 -15.15362 -14.75085 -14.69189 -14.48638 -14.31298 -14.06770 -14.03007 -13.26307 -13.24866 -13.13709 -12.97453 -12.89690 -12.61640 -12.55867 -12.53023 -12.21954 -12.19858 -12.01982 -11.97023 -11.84918 -11.78258 -11.63882 -11.54448 -11.38351 -11.34515 -11.14570 -10.53813 -10.24751 -9.70196 -8.69283 -7.86506 -5.32208 1.12905 1.49559 1.51249 1.58526 1.61697 1.86218 2.22293 2.53137 3.23023 3.30044 3.40640 3.49090 3.68580 3.87033 3.93100 4.07338 4.10228 4.26008 4.31262 4.33348 4.37081 4.38145 4.43173 4.46068 4.48468 4.56076 4.67435 4.73197 4.83417 4.87353 4.87837 5.01480 5.07177 5.09202 5.13175 5.18104 5.20782 5.26936 5.32078 5.37896 5.48640 5.63002 5.65846 5.67820 5.71708 6.08477 6.40248 6.69152 7.15717 7.17204 7.66872 7.85401 8.38574 9.20439 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.033863 B = 0.001758 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.659625 B =15920.237651 C =16040.534015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.361 6.361 3 C 0.472 3.528 4 O -0.537 6.537 5 C -0.083 4.083 6 H 0.140 0.860 7 C -0.098 4.098 8 C -0.132 4.132 9 C 0.159 3.841 10 H 0.080 0.920 11 N -0.729 5.729 12 C 0.701 3.299 13 O -0.633 6.633 14 N -0.728 5.728 15 C 0.182 3.818 16 C -0.122 4.122 17 C 0.144 3.856 18 N -0.608 5.608 19 C -0.265 4.265 20 H 0.067 0.933 21 C -0.049 4.049 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.276 1.276 27 C 0.179 3.821 28 C -0.128 4.128 29 C -0.106 4.106 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.130 0.870 33 H 0.070 0.930 34 H 0.098 0.902 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.055 0.945 40 H 0.064 0.936 41 H 0.058 0.942 42 H 0.007 0.993 43 H 0.057 0.943 44 H 0.251 0.749 45 H -0.006 1.006 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.814 -18.674 -8.641 32.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.277 6.277 3 C 0.316 3.684 4 O -0.427 6.427 5 C -0.102 4.102 6 H 0.158 0.842 7 C -0.136 4.136 8 C -0.171 4.171 9 C 0.054 3.946 10 H 0.099 0.901 11 N -0.385 5.385 12 C 0.401 3.599 13 O -0.514 6.514 14 N -0.383 5.383 15 C 0.077 3.923 16 C -0.163 4.163 17 C 0.018 3.982 18 N -0.332 5.332 19 C -0.395 4.395 20 H 0.085 0.915 21 C -0.245 4.245 22 N -0.581 5.581 23 Si 0.797 3.203 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.202 1.202 27 C 0.052 3.948 28 C -0.168 4.168 29 C -0.144 4.144 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.148 0.852 33 H 0.089 0.911 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.244 0.756 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.025 0.975 43 H 0.076 0.924 44 H 0.060 0.940 45 H 0.013 0.987 46 H 0.081 0.919 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -24.126 -18.742 -9.153 31.892 hybrid contribution -0.187 1.267 0.946 1.592 sum -24.313 -17.475 -8.207 31.046 Atomic orbital electron populations 1.23535 0.75013 1.05643 1.02432 1.86513 1.24763 1.32871 1.83538 1.23933 0.92366 0.81091 0.70978 1.90672 1.67931 1.37382 1.46705 1.22056 0.85834 0.98848 1.03504 0.84186 1.22271 0.95121 1.01499 0.94716 1.22575 0.97616 0.95975 1.00926 1.21454 0.96809 0.84762 0.91592 0.90137 1.45168 1.05870 1.36226 1.51219 1.16148 0.83805 0.80414 0.79574 1.90896 1.43362 1.60812 1.56347 1.45156 1.09355 1.34230 1.49550 1.20466 0.81474 0.93383 0.97027 1.22169 0.97068 0.98601 0.98412 1.20973 0.94440 0.84909 0.97863 1.44334 1.63420 1.01372 1.24053 1.19490 1.31128 0.98676 0.90211 0.91503 1.25818 0.98930 1.00141 0.99580 1.70181 1.48338 1.14017 1.25575 0.85316 0.78089 0.77244 0.79620 1.20291 1.22073 1.20195 1.20565 0.88778 0.94954 0.90468 1.22258 0.99042 0.94112 1.01346 1.22495 0.94099 0.94817 1.02975 0.92103 0.92030 0.85205 0.91090 0.88393 0.90518 0.91631 0.75485 0.75557 0.92660 0.91687 0.92286 0.97531 0.92445 0.94028 0.98746 0.91872 0.90627 0.91203 0.89464 0.89771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.56 113.37 1.20 1.42 16 2 O -0.36 -4.63 10.56 -51.46 -0.54 -5.17 16 3 C 0.47 7.02 7.27 71.24 0.52 7.54 16 4 O -0.54 -11.21 15.51 21.97 0.34 -10.87 16 5 C -0.08 -0.88 3.39 -10.24 -0.03 -0.92 16 6 H 0.14 0.94 8.14 -2.39 -0.02 0.92 16 7 C -0.10 -0.98 6.27 31.67 0.20 -0.78 16 8 C -0.13 -1.93 6.59 31.32 0.21 -1.72 16 9 C 0.16 2.65 3.25 45.72 0.15 2.79 16 10 H 0.08 1.66 7.56 -2.39 -0.02 1.65 16 11 N -0.73 -13.75 4.99 -454.34 -2.27 -16.01 16 12 C 0.70 19.58 8.53 179.05 1.53 21.10 16 13 O -0.63 -23.56 15.66 -3.99 -0.06 -23.62 16 14 N -0.73 -19.19 5.08 -457.66 -2.33 -21.52 16 15 C 0.18 6.26 2.41 45.02 0.11 6.37 16 16 C -0.12 -4.42 5.65 30.67 0.17 -4.25 16 17 C 0.14 6.33 6.52 86.36 0.56 6.90 16 18 N -0.61 -30.94 2.99 -699.07 -2.09 -33.03 16 19 C -0.26 -14.62 9.58 84.03 0.81 -13.82 16 20 H 0.07 3.59 7.89 -2.91 -0.02 3.56 16 21 C -0.05 -2.75 4.92 84.86 0.42 -2.33 16 22 N -0.94 -55.35 11.20 21.65 0.24 -55.11 16 23 Si 0.97 44.62 29.59 68.60 2.03 46.65 16 24 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 25 H -0.29 -13.63 7.11 99.48 0.71 -12.92 16 26 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 27 C 0.18 8.60 5.30 86.36 0.46 9.06 16 28 C -0.13 -4.58 5.55 30.67 0.17 -4.41 16 29 C -0.11 -1.35 5.58 31.68 0.18 -1.17 16 30 H 0.06 0.55 8.13 -2.39 -0.02 0.53 16 31 H 0.06 0.54 8.13 -2.38 -0.02 0.52 16 32 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16 33 H 0.07 0.75 8.05 -2.39 -0.02 0.73 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.06 1.14 7.92 -2.39 -0.02 1.12 16 37 H 0.41 5.45 8.37 -92.71 -0.78 4.67 16 38 H 0.41 8.04 8.62 -92.71 -0.80 7.25 16 39 H 0.06 2.23 7.58 -2.38 -0.02 2.21 16 40 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 41 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 42 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 43 H 0.06 2.45 7.93 -2.38 -0.02 2.43 16 44 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 45 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 46 H 0.06 3.39 6.06 -2.38 -0.01 3.38 16 47 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 49 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 50 H 0.08 1.16 7.09 -2.39 -0.02 1.15 16 Total: -1.00 -74.44 399.45 1.33 -73.11 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: -0.62 Total: 19.80 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: 6.63 Total: 25.78 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -6.44 Total: -125.68 kcal Atomic # 8 Polarization: -39.40 SS G_CDS: -0.27 Total: -39.67 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Total: -74.44 1.33 -73.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339835075.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.184 kcal (2) G-P(sol) polarization free energy of solvation -74.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds