Wall clock time and date at job start Sat Apr 11 2020 05:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42899 * 113.99649 * 2 1 4 4 C 1.53000 * 109.47405 * 179.97438 * 3 2 1 5 5 N 1.46499 * 109.46840 * 64.99638 * 4 3 2 6 6 C 1.46766 * 124.35286 * 269.72490 * 5 4 3 7 7 C 1.54296 * 105.56628 * 196.88636 * 6 5 4 8 8 H 1.09004 * 110.74713 * 93.00241 * 7 6 5 9 9 C 1.50703 * 111.12131 * 216.71238 * 7 6 5 10 10 O 1.21279 * 119.99597 * 354.00840 * 9 7 6 11 11 N 1.34771 * 119.99921 * 174.01470 * 9 7 6 12 12 C 1.46497 * 119.99568 * 179.97438 * 11 9 7 13 13 C 1.53001 * 109.47041 * 180.02562 * 12 11 9 14 14 H 1.09004 * 109.47356 * 65.00593 * 13 12 11 15 15 N 1.46501 * 109.47225 * 305.00151 * 13 12 11 16 16 C 1.36937 * 120.00233 * 154.99893 * 15 13 12 17 17 H 1.08009 * 119.99606 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00229 * 180.02562 * 16 15 13 19 19 N 1.31623 * 120.00076 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00069 * 359.97438 * 18 16 15 21 21 H 1.48495 * 109.47037 * 89.99716 * 20 18 16 22 22 H 1.48498 * 109.47337 * 210.00195 * 20 18 16 23 23 H 1.48504 * 109.47029 * 330.00372 * 20 18 16 24 24 C 1.53012 * 109.47438 * 185.00244 * 13 12 11 25 25 C 1.52993 * 117.49833 * 248.74933 * 24 13 12 26 26 C 1.52995 * 117.50124 * 180.08842 * 24 13 12 27 27 C 1.54639 * 101.84559 * 334.93981 * 7 6 5 28 28 C 1.34426 * 124.34837 * 90.02687 * 5 4 3 29 29 O 1.21280 * 124.94315 * 359.61590 * 28 5 4 30 30 H 1.08992 * 109.47069 * 60.00902 * 1 2 3 31 31 H 1.09008 * 109.46743 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47463 * 299.99806 * 1 2 3 33 33 H 1.09002 * 109.47445 * 59.99875 * 3 2 1 34 34 H 1.09002 * 109.47167 * 299.99793 * 3 2 1 35 35 H 1.09002 * 109.47398 * 184.99964 * 4 3 2 36 36 H 1.09001 * 109.47194 * 305.00145 * 4 3 2 37 37 H 1.08998 * 110.24604 * 316.02048 * 6 5 4 38 38 H 1.09002 * 110.24437 * 78.01753 * 6 5 4 39 39 H 0.96996 * 120.00777 * 0.02562 * 11 9 7 40 40 H 1.09002 * 109.47708 * 300.00374 * 12 11 9 41 41 H 1.09000 * 109.47543 * 60.00606 * 12 11 9 42 42 H 0.96994 * 119.99948 * 335.00185 * 15 13 12 43 43 H 0.96997 * 119.99838 * 179.97438 * 19 18 16 44 44 H 1.09000 * 115.54187 * 34.41580 * 24 13 12 45 45 H 1.09005 * 117.50164 * 359.97438 * 25 24 13 46 46 H 1.09001 * 117.50161 * 145.01874 * 25 24 13 47 47 H 1.08994 * 117.49725 * 214.98168 * 26 24 13 48 48 H 1.09008 * 117.49790 * 359.97438 * 26 24 13 49 49 H 1.08995 * 110.48125 * 265.90309 * 27 7 6 50 50 H 1.08995 * 110.48288 * 143.26032 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5641 -1.2508 6 6 4.1448 -0.8810 -1.4443 7 6 5.0104 -1.0310 -2.7127 8 1 6.0668 -1.1003 -2.4533 9 6 4.5780 -2.2228 -3.5274 10 8 3.7302 -2.9760 -3.0973 11 7 5.1334 -2.4517 -4.7338 12 6 4.7135 -3.6106 -5.5255 13 6 5.4929 -3.6386 -6.8417 14 1 6.5509 -3.7994 -6.6342 15 7 5.3204 -2.3616 -7.5387 16 6 6.2686 -1.9342 -8.4294 17 1 7.1434 -2.5388 -8.6185 18 6 6.1055 -0.7239 -9.0894 19 7 7.0166 -0.3133 -9.9459 20 14 4.5921 0.3214 -8.7629 21 1 4.8675 1.2542 -7.6408 22 1 4.2554 1.0993 -9.9822 23 1 3.4503 -0.5586 -8.4061 24 6 4.9675 -4.7748 -7.7217 25 6 5.8934 -5.9691 -7.9608 26 6 5.6244 -4.9707 -9.0895 27 6 4.7095 0.2888 -3.4603 28 6 4.2850 1.2454 -2.3679 29 8 4.2313 2.4515 -2.4830 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5137 0.8899 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.9783 2.1768 0.0902 36 1 3.8508 0.5687 0.8427 37 1 4.6527 -1.3199 -0.5855 38 1 3.1756 -1.3568 -1.5939 39 1 5.8118 -1.8497 -5.0776 40 1 4.9130 -4.5246 -4.9660 41 1 3.6464 -3.5394 -5.7362 42 1 4.5347 -1.8188 -7.3691 43 1 6.9024 0.5322 -10.4073 44 1 3.8988 -4.9742 -7.6433 45 1 6.8770 -5.9453 -7.4916 46 1 5.4338 -6.9543 -8.0403 47 1 4.9879 -5.2994 -9.9109 48 1 6.4306 -4.2899 -9.3627 49 1 3.9010 0.1454 -4.1771 50 1 5.6049 0.6557 -3.9620 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566712321.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:15 Heat of formation + Delta-G solvation = -72.536828 kcal Electronic energy + Delta-G solvation = -30381.514962 eV Core-core repulsion = 26217.292838 eV Total energy + Delta-G solvation = -4164.222124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.92588 -39.32985 -38.07812 -37.70693 -36.27909 -34.83006 -33.70339 -33.38239 -31.27253 -29.72081 -28.39486 -27.78636 -26.59184 -24.39901 -23.30242 -22.81809 -21.94751 -21.70473 -20.29104 -19.65533 -19.51846 -17.99986 -17.34515 -17.16806 -16.67779 -16.17616 -15.85708 -15.68270 -15.40958 -15.24397 -15.03456 -14.77522 -14.40116 -14.00756 -13.87120 -13.77804 -13.49338 -13.28519 -13.01999 -12.79873 -12.60644 -12.40734 -12.36604 -12.21545 -11.72173 -11.56997 -11.45792 -11.42330 -11.35825 -10.96395 -10.91570 -10.76990 -10.29959 -10.17882 -9.98287 -9.77120 -9.72745 -9.52876 -9.41824 -9.04809 -8.91268 -8.83762 -7.40031 -5.85447 -3.22242 2.44609 2.64344 2.72617 3.28268 3.33095 3.35626 3.43004 3.48150 4.13874 4.23956 4.36791 4.51595 4.67735 4.69702 4.72517 4.85914 4.93031 5.05389 5.08348 5.09008 5.09561 5.21657 5.28774 5.32365 5.38846 5.41285 5.47547 5.51425 5.53281 5.62527 5.68032 5.71059 5.87044 5.87478 5.94138 6.10050 6.14707 6.31591 6.42212 6.53088 6.68139 6.70303 6.78338 6.94605 6.96119 7.67332 7.88232 8.02009 8.30060 8.32563 9.09671 9.82292 10.01087 11.32119 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011890 B = 0.003143 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2354.370701 B = 8906.038134 C =10286.956462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.385 6.385 3 C 0.041 3.959 4 C 0.131 3.869 5 N -0.614 5.614 6 C 0.125 3.875 7 C -0.125 4.125 8 H 0.119 0.881 9 C 0.523 3.477 10 O -0.543 6.543 11 N -0.712 5.712 12 C 0.115 3.885 13 C 0.199 3.801 14 H 0.065 0.935 15 N -0.742 5.742 16 C -0.243 4.243 17 H 0.092 0.908 18 C 0.011 3.989 19 N -0.930 5.930 20 Si 0.877 3.123 21 H -0.282 1.282 22 H -0.292 1.292 23 H -0.278 1.278 24 C -0.164 4.164 25 C -0.193 4.193 26 C -0.154 4.154 27 C -0.148 4.148 28 C 0.521 3.479 29 O -0.532 6.532 30 H 0.040 0.960 31 H 0.087 0.913 32 H 0.039 0.961 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.098 0.902 36 H 0.089 0.911 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.412 0.588 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.111 0.889 49 H 0.110 0.890 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.987 -2.813 19.993 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.304 6.304 3 C -0.037 4.037 4 C 0.009 3.991 5 N -0.348 5.348 6 C 0.002 3.998 7 C -0.147 4.147 8 H 0.136 0.864 9 C 0.308 3.692 10 O -0.421 6.421 11 N -0.364 5.364 12 C -0.009 4.009 13 C 0.089 3.911 14 H 0.082 0.918 15 N -0.385 5.385 16 C -0.373 4.373 17 H 0.110 0.890 18 C -0.186 4.186 19 N -0.577 5.577 20 Si 0.707 3.293 21 H -0.208 1.208 22 H -0.218 1.218 23 H -0.204 1.204 24 C -0.186 4.186 25 C -0.231 4.231 26 C -0.192 4.192 27 C -0.188 4.188 28 C 0.309 3.691 29 O -0.408 6.408 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.116 0.884 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.114 0.886 39 H 0.248 0.752 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.099 0.901 47 H 0.098 0.902 48 H 0.129 0.871 49 H 0.128 0.872 50 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.313 -2.802 20.144 21.613 hybrid contribution -1.129 1.262 -0.254 1.712 sum -8.441 -1.540 19.890 21.662 Atomic orbital electron populations 1.22731 0.80984 1.02884 0.99796 1.87910 1.19745 1.27334 1.95394 1.23050 0.94369 0.85415 1.00861 1.21416 0.92171 0.99763 0.85791 1.48214 1.66594 1.07924 1.12088 1.21913 1.01454 0.80121 0.96285 1.22224 1.02723 0.93705 0.96056 0.86352 1.19986 0.81693 0.85820 0.81741 1.90699 1.32321 1.48306 1.70800 1.45994 1.42888 1.29554 1.17943 1.21681 0.99410 0.87902 0.91905 1.20026 0.97402 0.85737 0.87975 0.91758 1.42840 1.25183 1.19460 1.50969 1.18985 1.00133 1.02553 1.15620 0.89006 1.24634 0.97462 0.97805 0.98665 1.69684 1.34911 1.22642 1.30436 0.86687 0.83974 0.80938 0.77714 1.20811 1.21818 1.20392 1.22951 0.97402 0.97379 1.00849 1.22953 1.00741 0.93926 1.05480 1.22850 1.03987 1.01250 0.91076 1.22381 1.05494 0.93144 0.97792 1.20817 0.76187 0.88124 0.83958 1.90730 1.54223 1.13623 1.82247 0.94148 0.89488 0.94226 0.92251 0.92802 0.88361 0.89279 0.89931 0.88567 0.75197 0.91053 0.91733 0.80513 0.92967 0.89179 0.89391 0.90051 0.90220 0.87086 0.87222 0.86640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.38 16 2 O -0.39 -4.04 10.55 -35.23 -0.37 -4.42 16 3 C 0.04 0.37 6.28 37.16 0.23 0.61 16 4 C 0.13 1.16 6.32 -4.04 -0.03 1.14 16 5 N -0.61 -6.82 2.88 -172.53 -0.50 -7.32 16 6 C 0.13 1.32 6.57 -3.22 -0.02 1.30 16 7 C -0.13 -1.33 3.53 -90.23 -0.32 -1.65 16 8 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 9 C 0.52 7.02 7.07 -10.99 -0.08 6.94 16 10 O -0.54 -8.86 15.57 5.56 0.09 -8.77 16 11 N -0.71 -9.77 5.34 -60.30 -0.32 -10.09 16 12 C 0.12 1.68 5.22 -4.04 -0.02 1.66 16 13 C 0.20 3.30 2.70 -67.92 -0.18 3.12 16 14 H 0.06 1.10 7.84 -51.93 -0.41 0.69 16 15 N -0.74 -15.19 4.34 -53.42 -0.23 -15.42 16 16 C -0.24 -6.06 9.11 -15.06 -0.14 -6.20 16 17 H 0.09 2.47 7.14 -52.48 -0.37 2.10 16 18 C 0.01 0.29 5.50 -17.43 -0.10 0.20 16 19 N -0.93 -27.54 13.97 55.49 0.78 -26.76 16 20 Si 0.88 21.01 27.74 -169.99 -4.71 16.30 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.28 -6.37 6.52 56.52 0.37 -6.00 16 24 C -0.16 -2.63 5.36 -90.62 -0.49 -3.12 16 25 C -0.19 -2.77 10.18 -26.70 -0.27 -3.04 16 26 C -0.15 -2.65 9.78 -26.70 -0.26 -2.91 16 27 C -0.15 -1.79 6.37 -26.74 -0.17 -1.96 16 28 C 0.52 7.12 8.02 -10.86 -0.09 7.03 16 29 O -0.53 -9.13 17.59 5.56 0.10 -9.03 16 30 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.63 8.14 -51.92 -0.42 0.21 16 32 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.10 0.84 7.93 -51.93 -0.41 0.43 16 36 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 1.22 7.05 -51.93 -0.37 0.86 16 39 H 0.41 5.63 8.14 -40.82 -0.33 5.30 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.36 7.57 5.66 -40.82 -0.23 7.34 16 43 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 44 H 0.09 1.39 8.11 -51.93 -0.42 0.97 16 45 H 0.09 1.22 8.05 -51.93 -0.42 0.80 16 46 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 48 H 0.11 2.23 6.23 -51.92 -0.32 1.91 16 49 H 0.11 1.44 7.89 -51.93 -0.41 1.03 16 50 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 LS Contribution 409.92 15.07 6.18 6.18 Total: -1.00 -32.68 409.92 -8.17 -40.85 By element: Atomic # 1 Polarization: 22.36 SS G_CDS: -8.36 Total: 14.00 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.81 Total: 4.49 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.28 Total: -59.59 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.19 Total: -22.22 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.71 Total: 16.30 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.68 -8.17 -40.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566712321.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.689 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds