Wall clock time and date at job start Sat Apr 11 2020 05:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34639 * 116.99868 * 2 1 4 4 O 1.21509 * 120.00245 * 359.97438 * 3 2 1 5 5 N 1.34776 * 119.99516 * 179.97438 * 3 2 1 6 6 C 1.46501 * 119.99355 * 179.97438 * 5 3 2 7 7 C 1.50704 * 109.46999 * 179.97438 * 6 5 3 8 8 O 1.21287 * 119.99745 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00311 * 180.02562 * 7 6 5 10 10 C 1.46926 * 120.62864 * 6.37554 * 9 7 6 11 11 C 1.53201 * 108.77161 * 126.39302 * 10 9 7 12 12 C 1.53041 * 109.30867 * 54.63900 * 11 10 9 13 13 C 1.53045 * 109.54101 * 298.63227 * 12 11 10 14 14 C 1.46929 * 120.63140 * 186.38162 * 9 7 6 15 15 H 1.09001 * 109.70323 * 113.74973 * 14 9 7 16 16 C 1.53003 * 109.58723 * 353.39727 * 14 9 7 17 17 H 1.08998 * 109.99298 * 314.67514 * 16 14 9 18 18 C 1.54322 * 109.88484 * 75.76781 * 16 14 9 19 19 C 1.55159 * 102.93949 * 141.61158 * 18 16 14 20 20 C 1.54911 * 101.58199 * 324.49710 * 19 18 16 21 21 N 1.47015 * 109.87983 * 193.58107 * 16 14 9 22 22 C 1.36939 * 125.65446 * 61.67809 * 21 16 14 23 23 H 1.07999 * 119.99488 * 18.19736 * 22 21 16 24 24 C 1.38805 * 120.00274 * 198.20824 * 22 21 16 25 25 N 1.31619 * 120.00410 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99956 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47481 * 60.00046 * 26 24 22 28 28 H 1.48509 * 109.47346 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47407 * 299.99966 * 26 24 22 30 30 H 1.08998 * 109.47898 * 300.00603 * 1 2 3 31 31 H 1.09005 * 109.47021 * 60.00590 * 1 2 3 32 32 H 1.09004 * 109.47098 * 179.97438 * 1 2 3 33 33 H 0.96992 * 120.00420 * 359.97438 * 5 3 2 34 34 H 1.09000 * 109.47220 * 60.00620 * 6 5 3 35 35 H 1.08997 * 109.47645 * 300.00083 * 6 5 3 36 36 H 1.08994 * 109.58796 * 6.60960 * 10 9 7 37 37 H 1.08998 * 109.59241 * 246.17874 * 10 9 7 38 38 H 1.09001 * 109.50016 * 294.68977 * 11 10 9 39 39 H 1.08995 * 109.52244 * 174.59935 * 11 10 9 40 40 H 1.09010 * 109.46029 * 178.61492 * 12 11 10 41 41 H 1.08996 * 109.46692 * 58.65208 * 12 11 10 42 42 H 1.09004 * 109.49333 * 301.41728 * 13 12 11 43 43 H 1.08993 * 109.52599 * 181.33754 * 13 12 11 44 44 H 1.08991 * 110.72061 * 259.97810 * 18 16 14 45 45 H 1.08998 * 110.71637 * 23.25306 * 18 16 14 46 46 H 1.08998 * 110.99980 * 206.42871 * 19 18 16 47 47 H 1.08993 * 111.00444 * 82.57368 * 19 18 16 48 48 H 1.08998 * 110.36814 * 278.17542 * 20 19 18 49 49 H 1.09003 * 110.36604 * 155.84879 * 20 19 18 50 50 H 0.96995 * 120.00468 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4091 1.2701 0.0005 6 6 4.0742 2.5755 0.0000 7 6 5.5682 2.3781 0.0013 8 8 6.0318 1.2573 0.0022 9 7 6.3892 3.4468 0.0016 10 6 5.8487 4.8059 0.1410 11 6 6.5658 5.5053 1.3002 12 6 8.0773 5.4509 1.0666 13 6 8.5366 3.9915 1.0245 14 6 7.8418 3.2751 -0.1375 15 1 8.1738 3.7048 -1.0826 16 6 8.1878 1.7851 -0.1021 17 1 7.6478 1.2963 0.7088 18 6 7.8191 1.1284 -1.4490 19 6 8.9822 0.1271 -1.6773 20 6 10.1837 0.9062 -1.0863 21 7 9.6356 1.6125 0.0860 22 6 10.3559 2.0366 1.1707 23 1 9.8505 2.2735 2.0953 24 6 11.7353 2.1624 1.0818 25 7 12.3513 1.8735 -0.0449 26 14 12.7176 2.7417 2.5613 27 1 12.5155 1.7982 3.6900 28 1 14.1597 2.7904 2.2098 29 1 12.2589 4.0965 2.9605 30 1 -0.3635 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 3.9374 0.4567 0.0013 34 1 3.7810 3.1330 0.8895 35 1 3.7817 3.1320 -0.8905 36 1 4.7802 4.7546 0.3502 37 1 6.0162 5.3623 -0.7812 38 1 6.3238 5.0004 2.2354 39 1 6.2433 6.5450 1.3538 40 1 8.5890 5.9693 1.8776 41 1 8.3162 5.9341 0.1193 42 1 8.2759 3.5010 1.9624 43 1 9.6165 3.9535 0.8820 44 1 6.8671 0.6031 -1.3741 45 1 7.7887 1.8722 -2.2451 46 1 9.1273 -0.0673 -2.7399 47 1 8.8117 -0.8008 -1.1316 48 1 10.5676 1.6207 -1.8144 49 1 10.9697 0.2159 -0.7801 50 1 13.3153 1.9617 -0.1071 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566955856.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:21 Heat of formation + Delta-G solvation = -50.473387 kcal Electronic energy + Delta-G solvation = -31947.969132 eV Core-core repulsion = 27784.703751 eV Total energy + Delta-G solvation = -4163.265381 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.89190 -40.29764 -37.65737 -36.80887 -36.66663 -34.72440 -32.82818 -32.40958 -31.43032 -29.27112 -28.66847 -27.37020 -26.62372 -24.62701 -24.43899 -22.49333 -21.61547 -20.87317 -19.88309 -19.64247 -19.36327 -18.45309 -17.25206 -17.02711 -16.81605 -16.02452 -15.80751 -15.54187 -15.15637 -14.51404 -14.41825 -14.24044 -14.06763 -13.93095 -13.81694 -13.45226 -13.02370 -12.88250 -12.67889 -12.54840 -12.27945 -12.19421 -11.93194 -11.63451 -11.41425 -11.03489 -10.99242 -10.89636 -10.85230 -10.84952 -10.72375 -10.55222 -10.11249 -10.07746 -9.98878 -9.75338 -9.48650 -9.43754 -9.29424 -8.83250 -8.36615 -8.15812 -6.59737 -5.72466 -3.05674 1.91606 2.58913 2.69483 3.15853 3.38771 3.44710 3.44988 4.11754 4.39527 4.51241 4.84530 4.90236 4.97210 5.01635 5.11511 5.15621 5.19556 5.24787 5.40294 5.48273 5.57337 5.62415 5.71749 5.80470 5.89290 5.91496 6.02562 6.10155 6.11390 6.16016 6.22420 6.27834 6.34043 6.51810 6.63388 6.63830 6.78315 6.91034 6.95871 7.07449 7.22315 7.34896 7.54053 7.59235 7.62651 7.74147 7.85307 8.12736 8.27613 8.42350 9.24481 9.86447 10.60013 11.39546 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.015542 B = 0.003345 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.159143 B = 8369.265028 C = 9375.693506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.370 6.370 3 C 0.650 3.350 4 O -0.578 6.578 5 N -0.694 5.694 6 C 0.117 3.883 7 C 0.493 3.507 8 O -0.505 6.505 9 N -0.597 5.597 10 C 0.104 3.896 11 C -0.133 4.133 12 C -0.124 4.124 13 C -0.128 4.128 14 C 0.139 3.861 15 H 0.061 0.939 16 C 0.164 3.836 17 H 0.073 0.927 18 C -0.119 4.119 19 C -0.151 4.151 20 C 0.175 3.825 21 N -0.596 5.596 22 C -0.221 4.221 23 H 0.074 0.926 24 C -0.004 4.004 25 N -0.913 5.913 26 Si 0.901 3.099 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.419 0.581 34 H 0.097 0.903 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.056 0.944 43 H 0.120 0.880 44 H 0.088 0.912 45 H 0.042 0.958 46 H 0.050 0.950 47 H 0.055 0.945 48 H 0.024 0.976 49 H 0.059 0.941 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.888 2.813 -1.376 19.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.283 6.283 3 C 0.403 3.597 4 O -0.467 6.467 5 N -0.357 5.357 6 C -0.009 4.009 7 C 0.280 3.720 8 O -0.382 6.382 9 N -0.331 5.331 10 C -0.019 4.019 11 C -0.171 4.171 12 C -0.162 4.162 13 C -0.166 4.166 14 C 0.035 3.965 15 H 0.079 0.921 16 C 0.057 3.943 17 H 0.090 0.910 18 C -0.156 4.156 19 C -0.189 4.189 20 C 0.050 3.950 21 N -0.321 5.321 22 C -0.350 4.350 23 H 0.092 0.908 24 C -0.202 4.202 25 N -0.559 5.559 26 Si 0.731 3.269 27 H -0.212 1.212 28 H -0.217 1.217 29 H -0.210 1.210 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.258 0.742 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.075 0.925 43 H 0.137 0.863 44 H 0.106 0.894 45 H 0.060 0.940 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.042 0.958 49 H 0.078 0.922 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -18.757 2.706 -1.334 18.999 hybrid contribution 0.686 0.395 0.697 1.055 sum -18.071 3.101 -0.638 18.346 Atomic orbital electron populations 1.23199 0.74337 1.03498 1.02700 1.86264 1.24191 1.30848 1.87030 1.17979 0.83155 0.82221 0.76369 1.90994 1.64767 1.34846 1.56137 1.44265 1.03135 1.10684 1.77579 1.21138 0.90877 0.84397 1.04522 1.20199 0.87664 0.85580 0.78561 1.90742 1.75020 1.24176 1.48311 1.48271 1.08187 1.05264 1.71352 1.21773 0.97800 0.83187 0.99180 1.21913 0.97054 0.99928 0.98235 1.21644 0.94196 0.98984 1.01377 1.22367 1.04399 0.92124 0.97676 1.22351 0.75300 1.00770 0.98030 0.92054 1.21638 0.85799 0.89618 0.97200 0.90970 1.22955 0.98773 0.98018 0.95863 1.23008 0.98444 0.98529 0.98936 1.21326 0.92015 0.93402 0.88253 1.44723 1.02371 1.65560 1.19480 1.18909 0.88858 1.37570 0.89617 0.90785 1.24948 0.96953 1.01535 0.96733 1.69936 1.08318 1.53193 1.24425 0.86372 0.79394 0.78864 0.82246 1.21176 1.21702 1.20998 0.91839 0.91847 0.87940 0.74168 0.88546 0.88502 0.90328 0.91289 0.91697 0.91380 0.92212 0.92431 0.92486 0.86251 0.89374 0.93966 0.93144 0.92626 0.95827 0.92238 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -4.12 10.62 -40.32 -0.43 -4.55 16 3 C 0.65 8.29 8.75 54.05 0.47 8.76 16 4 O -0.58 -8.55 16.13 -19.28 -0.31 -8.86 16 5 N -0.69 -8.27 5.53 -66.47 -0.37 -8.64 16 6 C 0.12 1.31 4.58 -5.19 -0.02 1.29 16 7 C 0.49 6.87 7.39 -10.99 -0.08 6.79 16 8 O -0.51 -8.42 8.43 5.55 0.05 -8.37 16 9 N -0.60 -8.39 2.97 -165.22 -0.49 -8.88 16 10 C 0.10 1.11 6.32 -3.71 -0.02 1.08 16 11 C -0.13 -1.49 6.08 -26.61 -0.16 -1.65 16 12 C -0.12 -1.76 5.88 -26.69 -0.16 -1.92 16 13 C -0.13 -2.34 3.80 -26.61 -0.10 -2.44 16 14 C 0.14 2.49 2.68 -67.60 -0.18 2.31 16 15 H 0.06 1.17 7.80 -51.93 -0.41 0.77 16 16 C 0.16 3.42 2.32 -66.96 -0.16 3.26 16 17 H 0.07 1.64 5.87 -51.72 -0.30 1.34 16 18 C -0.12 -2.27 5.39 -24.90 -0.13 -2.41 16 19 C -0.15 -3.05 7.09 -24.58 -0.17 -3.23 16 20 C 0.18 4.29 5.37 -2.53 -0.01 4.28 16 21 N -0.60 -14.70 3.09 -162.58 -0.50 -15.20 16 22 C -0.22 -5.78 6.75 -15.06 -0.10 -5.88 16 23 H 0.07 1.90 6.41 -52.49 -0.34 1.56 16 24 C 0.00 -0.12 5.46 -17.43 -0.10 -0.21 16 25 N -0.91 -26.10 10.73 55.49 0.60 -25.51 16 26 Si 0.90 21.40 29.55 -169.99 -5.02 16.38 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.42 5.02 7.55 -40.82 -0.31 4.71 16 34 H 0.10 0.99 7.42 -51.93 -0.39 0.60 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.08 0.65 5.97 -51.93 -0.31 0.34 16 37 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 1.10 7.33 -51.93 -0.38 0.72 16 43 H 0.12 2.65 5.59 -51.93 -0.29 2.36 16 44 H 0.09 1.63 5.51 -52.32 -0.29 1.35 16 45 H 0.04 0.79 7.63 -51.93 -0.40 0.39 16 46 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 47 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.02 0.63 7.98 -51.93 -0.41 0.21 16 49 H 0.06 1.62 7.19 -51.93 -0.37 1.24 16 50 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 376.90 15.07 5.68 5.68 Total: -1.00 -31.13 376.90 -8.64 -39.77 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -7.98 Total: 6.65 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: 0.14 Total: 11.54 kcal Atomic # 7 Polarization: -57.46 SS G_CDS: -0.77 Total: -58.23 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.69 Total: -21.79 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -31.13 -8.64 -39.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566955856.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.700 kcal (2) G-P(sol) polarization free energy of solvation -31.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds