Wall clock time and date at job start Sat Apr 11 2020 05:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34633 * 117.00253 * 2 1 4 4 O 1.21508 * 120.00033 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99899 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00074 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47575 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99641 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00540 * 180.02562 * 7 6 5 10 10 C 1.46920 * 120.62811 * 354.91218 * 9 7 6 11 11 C 1.53191 * 108.77777 * 233.59043 * 10 9 7 12 12 C 1.53042 * 109.31277 * 305.36554 * 11 10 9 13 13 C 1.53037 * 109.53567 * 61.36313 * 12 11 10 14 14 C 1.46923 * 120.63301 * 174.63836 * 9 7 6 15 15 H 1.08994 * 109.58548 * 246.19528 * 14 9 7 16 16 C 1.53006 * 109.58762 * 6.62383 * 14 9 7 17 17 H 1.09000 * 109.86961 * 312.54356 * 16 14 9 18 18 C 1.54314 * 109.88058 * 191.52337 * 16 14 9 19 19 C 1.55158 * 102.94281 * 218.38968 * 18 16 14 20 20 C 1.54911 * 101.58210 * 35.49982 * 19 18 16 21 21 N 1.47027 * 109.88102 * 73.71486 * 16 14 9 22 22 C 1.36935 * 125.64894 * 298.31252 * 21 16 14 23 23 H 1.08007 * 120.00086 * 46.72760 * 22 21 16 24 24 C 1.38807 * 120.00132 * 226.73485 * 22 21 16 25 25 N 1.31622 * 120.00275 * 209.26832 * 24 22 21 26 26 Si 1.86801 * 120.00039 * 29.26246 * 24 22 21 27 27 H 1.48500 * 109.47226 * 92.19061 * 26 24 22 28 28 H 1.48497 * 109.47153 * 212.19027 * 26 24 22 29 29 H 1.48501 * 109.47133 * 332.19457 * 26 24 22 30 30 H 1.08997 * 109.47065 * 59.99700 * 1 2 3 31 31 H 1.08994 * 109.47523 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46901 * 299.99956 * 1 2 3 33 33 H 0.97001 * 120.00305 * 0.02562 * 5 3 2 34 34 H 1.09000 * 109.46948 * 300.00023 * 6 5 3 35 35 H 1.08996 * 109.47022 * 59.99832 * 6 5 3 36 36 H 1.09006 * 109.59137 * 353.37518 * 10 9 7 37 37 H 1.08994 * 109.58968 * 113.80100 * 10 9 7 38 38 H 1.08998 * 109.50093 * 65.31579 * 11 10 9 39 39 H 1.09005 * 109.50124 * 185.41348 * 11 10 9 40 40 H 1.08999 * 109.46265 * 181.38887 * 12 11 10 41 41 H 1.08996 * 109.45779 * 301.34421 * 12 11 10 42 42 H 1.08999 * 109.49790 * 58.59285 * 13 12 11 43 43 H 1.09007 * 109.49754 * 178.68441 * 13 12 11 44 44 H 1.08998 * 110.72817 * 336.75221 * 18 16 14 45 45 H 1.09001 * 110.72160 * 100.03046 * 18 16 14 46 46 H 1.09002 * 111.00745 * 153.57841 * 19 18 16 47 47 H 1.09011 * 111.00342 * 277.39094 * 19 18 16 48 48 H 1.09002 * 110.36157 * 81.82915 * 20 19 18 49 49 H 1.08996 * 110.37047 * 204.04468 * 20 19 18 50 50 H 0.96997 * 120.00311 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2186 0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.0744 2.5753 0.0000 7 6 5.5684 2.3778 -0.0013 8 8 6.0319 1.2570 -0.0032 9 7 6.3895 3.4466 -0.0006 10 6 5.8468 4.8075 -0.1105 11 6 6.5436 5.5239 -1.2715 12 6 8.0590 5.4663 -1.0654 13 6 8.5186 4.0066 -1.0529 14 6 7.8437 3.2733 0.1162 15 1 8.1870 3.6934 1.0615 16 6 8.1891 1.7839 0.0579 17 1 7.5346 1.2253 0.7269 18 6 9.6621 1.5704 0.4654 19 6 10.1312 0.4506 -0.5007 20 6 9.3513 0.8062 -1.7910 21 7 8.0412 1.2898 -1.3190 22 6 6.8787 1.2796 -2.0426 23 1 6.2522 2.1590 -2.0705 24 6 6.5053 0.1391 -2.7401 25 7 5.7849 0.2445 -3.8366 26 14 7.0253 -1.5455 -2.1226 27 1 5.9670 -2.0972 -1.2389 28 1 7.2288 -2.4553 -3.2785 29 1 8.2933 -1.4233 -1.3595 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9375 0.4565 -0.0013 34 1 3.7812 3.1329 -0.8895 35 1 3.7819 3.1317 0.8905 36 1 4.7747 4.7591 -0.3018 37 1 6.0305 5.3502 0.8167 38 1 6.2852 5.0329 -2.2097 39 1 6.2202 6.5644 -1.3037 40 1 8.5564 5.9967 -1.8774 41 1 8.3143 5.9355 -0.1154 42 1 8.2416 3.5299 -1.9932 43 1 9.6010 3.9670 -0.9295 44 1 10.2411 2.4808 0.3105 45 1 9.7315 1.2396 1.5017 46 1 11.2071 0.5036 -0.6673 47 1 9.8437 -0.5327 -0.1281 48 1 9.8689 1.5909 -2.3430 49 1 9.2284 -0.0783 -2.4160 50 1 5.5237 -0.5525 -4.3238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566955857.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:23 Heat of formation + Delta-G solvation = -36.115934 kcal Electronic energy + Delta-G solvation = -33209.853719 eV Core-core repulsion = 29047.210924 eV Total energy + Delta-G solvation = -4162.642796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.48713 -39.93025 -37.41964 -36.66950 -36.21703 -34.16910 -32.46572 -32.35942 -31.23641 -29.73923 -28.42700 -27.41139 -26.50699 -24.47426 -23.98547 -22.59402 -21.17155 -20.50322 -20.45325 -19.44378 -19.02610 -17.93632 -16.91840 -16.68300 -16.38490 -16.03427 -15.56157 -15.31686 -14.87325 -14.34326 -14.25669 -14.11445 -13.85611 -13.63792 -13.56513 -13.18588 -12.94361 -12.74542 -12.49706 -12.46402 -12.27195 -12.04501 -11.88855 -11.76916 -11.14388 -11.09924 -11.04947 -10.78763 -10.59063 -10.51931 -10.46868 -10.40292 -10.39143 -10.19201 -10.16225 -9.83669 -9.81311 -9.38511 -8.90886 -8.26776 -8.18359 -7.73102 -6.24466 -5.89240 -3.20421 2.41055 3.09437 3.34402 3.52253 3.63065 3.65706 3.71872 4.61844 4.73544 4.90650 5.08035 5.20612 5.22303 5.23628 5.30434 5.32798 5.39333 5.53348 5.57348 5.60338 5.63312 5.65258 5.67235 5.75371 5.76383 5.86006 5.94693 6.07629 6.11796 6.21063 6.27560 6.33848 6.39772 6.42812 6.49019 6.52336 6.57393 6.60782 6.67153 6.91194 7.02975 7.08950 7.19876 7.46800 7.76595 8.11336 8.18458 8.51440 8.62061 9.01465 9.09933 9.83563 10.54047 11.24347 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.005729 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.485508 B = 4886.510188 C = 6538.862744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 O -0.371 6.371 3 C 0.651 3.349 4 O -0.585 6.585 5 N -0.685 5.685 6 C 0.127 3.873 7 C 0.477 3.523 8 O -0.444 6.444 9 N -0.603 5.603 10 C 0.112 3.888 11 C -0.134 4.134 12 C -0.116 4.116 13 C -0.125 4.125 14 C 0.150 3.850 15 H 0.053 0.947 16 C 0.135 3.865 17 H 0.092 0.908 18 C -0.133 4.133 19 C -0.134 4.134 20 C 0.131 3.869 21 N -0.583 5.583 22 C -0.191 4.191 23 H 0.069 0.931 24 C 0.041 3.959 25 N -0.894 5.894 26 Si 0.869 3.131 27 H -0.293 1.293 28 H -0.309 1.309 29 H -0.260 1.260 30 H 0.062 0.938 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.420 0.580 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.072 0.928 39 H 0.063 0.937 40 H 0.055 0.945 41 H 0.051 0.949 42 H 0.094 0.906 43 H 0.056 0.944 44 H 0.059 0.941 45 H 0.056 0.944 46 H 0.056 0.944 47 H 0.061 0.939 48 H 0.020 0.980 49 H 0.040 0.960 50 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.239 7.048 9.473 11.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.036 4.036 2 O -0.284 6.284 3 C 0.404 3.596 4 O -0.476 6.476 5 N -0.346 5.346 6 C 0.001 3.999 7 C 0.264 3.736 8 O -0.315 6.315 9 N -0.340 5.340 10 C -0.011 4.011 11 C -0.172 4.172 12 C -0.154 4.154 13 C -0.163 4.163 14 C 0.045 3.955 15 H 0.071 0.929 16 C 0.029 3.971 17 H 0.109 0.891 18 C -0.172 4.172 19 C -0.172 4.172 20 C 0.006 3.994 21 N -0.308 5.308 22 C -0.319 4.319 23 H 0.087 0.913 24 C -0.160 4.160 25 N -0.535 5.535 26 Si 0.698 3.302 27 H -0.220 1.220 28 H -0.237 1.237 29 H -0.184 1.184 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.079 0.921 33 H 0.259 0.741 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.077 0.923 38 H 0.091 0.909 39 H 0.082 0.918 40 H 0.074 0.926 41 H 0.070 0.930 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.038 0.962 49 H 0.058 0.942 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.546 6.780 9.281 11.506 hybrid contribution 0.222 -1.161 0.027 1.183 sum -0.324 5.619 9.307 10.877 Atomic orbital electron populations 1.23129 0.74892 1.03144 1.02465 1.86274 1.23785 1.31194 1.87176 1.17953 0.83317 0.81989 0.76384 1.90949 1.64904 1.34805 1.56923 1.44250 1.02875 1.10966 1.76542 1.20971 0.91638 0.84015 1.03289 1.19641 0.87216 0.85320 0.81396 1.90752 1.74031 1.23834 1.42913 1.47524 1.06457 1.04821 1.75163 1.21586 0.98162 0.83430 0.97966 1.21882 0.96083 0.99699 0.99532 1.21499 0.95455 0.97787 1.00624 1.21996 0.98761 0.93780 1.01806 1.21859 0.78467 0.99188 0.95961 0.92900 1.21963 0.92584 0.90769 0.91807 0.89109 1.22702 0.97989 0.98263 0.98200 1.22747 0.98349 0.98519 0.97632 1.21774 0.87397 0.96567 0.93697 1.44538 1.03797 1.73661 1.08835 1.18087 0.98432 0.95610 1.19811 0.91346 1.25645 0.96238 0.97854 0.96308 1.69962 1.40195 1.29047 1.14322 0.86949 0.79389 0.85719 0.78140 1.22008 1.23713 1.18447 0.91928 0.88273 0.92118 0.74093 0.89239 0.89696 0.90443 0.92305 0.90944 0.91801 0.92617 0.93007 0.88730 0.92493 0.92275 0.92502 0.92554 0.91983 0.96229 0.94196 0.93130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.71 10.56 101.05 1.07 1.77 16 2 O -0.37 -6.21 10.62 -40.31 -0.43 -6.64 16 3 C 0.65 12.04 8.75 54.05 0.47 12.51 16 4 O -0.59 -11.56 16.13 -19.28 -0.31 -11.87 16 5 N -0.68 -12.65 5.53 -66.47 -0.37 -13.01 16 6 C 0.13 2.15 4.55 -5.20 -0.02 2.12 16 7 C 0.48 8.79 5.38 -10.99 -0.06 8.73 16 8 O -0.44 -9.59 8.30 5.55 0.05 -9.54 16 9 N -0.60 -9.74 2.56 -164.97 -0.42 -10.17 16 10 C 0.11 1.44 6.32 -3.71 -0.02 1.42 16 11 C -0.13 -1.72 6.08 -26.61 -0.16 -1.88 16 12 C -0.12 -1.50 5.88 -26.69 -0.16 -1.66 16 13 C -0.13 -1.98 4.96 -26.39 -0.13 -2.11 16 14 C 0.15 2.44 2.55 -67.37 -0.17 2.27 16 15 H 0.05 0.78 8.11 -51.93 -0.42 0.36 16 16 C 0.13 2.54 2.31 -66.95 -0.15 2.38 16 17 H 0.09 1.93 5.40 -54.81 -0.30 1.64 16 18 C -0.13 -2.14 6.33 -24.90 -0.16 -2.30 16 19 C -0.13 -2.35 6.97 -24.58 -0.17 -2.53 16 20 C 0.13 2.74 6.02 -2.53 -0.02 2.73 16 21 N -0.58 -12.93 1.15 -162.58 -0.19 -13.11 16 22 C -0.19 -4.92 5.66 -15.06 -0.09 -5.00 16 23 H 0.07 1.88 5.92 -52.48 -0.31 1.57 16 24 C 0.04 1.14 5.33 -17.43 -0.09 1.05 16 25 N -0.89 -26.68 13.97 55.49 0.78 -25.90 16 26 Si 0.87 22.55 26.82 -169.99 -4.56 17.99 16 27 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 28 H -0.31 -8.28 7.11 56.52 0.40 -7.87 16 29 H -0.26 -6.46 4.97 56.52 0.28 -6.18 16 30 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.42 8.28 7.55 -40.82 -0.31 7.98 16 34 H 0.09 1.56 7.48 -51.93 -0.39 1.17 16 35 H 0.09 1.23 8.11 -51.93 -0.42 0.81 16 36 H 0.08 0.94 5.96 -51.93 -0.31 0.63 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.09 1.90 6.55 -51.93 -0.34 1.56 16 43 H 0.06 0.85 7.00 -51.93 -0.36 0.49 16 44 H 0.06 0.86 6.66 -51.93 -0.35 0.51 16 45 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 47 H 0.06 1.17 7.40 -51.92 -0.38 0.78 16 48 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 49 H 0.04 0.93 5.44 -51.93 -0.28 0.64 16 50 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 371.37 15.07 5.60 5.60 Total: -1.00 -32.03 371.37 -7.80 -39.82 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: -8.08 Total: 7.34 kcal Atomic # 6 Polarization: 19.37 SS G_CDS: 0.14 Total: 19.50 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -0.20 Total: -62.20 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.69 Total: -28.05 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.56 Total: 17.99 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.03 -7.80 -39.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566955857.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.709 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.825 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds