Wall clock time and date at job start Sat Apr 11 2020 05:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34633 * 117.00253 * 2 1 4 4 O 1.21508 * 120.00033 * 0.02562 * 3 2 1 5 5 N 1.34775 * 119.99899 * 180.02562 * 3 2 1 6 6 C 1.46499 * 120.00074 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47575 * 180.02562 * 6 5 3 8 8 O 1.21286 * 119.99641 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00540 * 180.02562 * 7 6 5 10 10 C 1.46920 * 120.62811 * 354.91218 * 9 7 6 11 11 C 1.53191 * 108.77777 * 233.59043 * 10 9 7 12 12 C 1.53042 * 109.31277 * 305.36554 * 11 10 9 13 13 C 1.53037 * 109.53567 * 61.36313 * 12 11 10 14 14 C 1.46923 * 120.63301 * 174.63836 * 9 7 6 15 15 H 1.08994 * 109.58548 * 246.19528 * 14 9 7 16 16 C 1.53006 * 109.58762 * 6.62383 * 14 9 7 17 17 H 1.09000 * 109.86961 * 312.54356 * 16 14 9 18 18 C 1.54314 * 109.88058 * 191.52337 * 16 14 9 19 19 C 1.55158 * 102.94281 * 218.38968 * 18 16 14 20 20 C 1.54911 * 101.58210 * 35.49982 * 19 18 16 21 21 N 1.47027 * 109.88102 * 73.71486 * 16 14 9 22 22 C 1.36935 * 125.64894 * 298.31252 * 21 16 14 23 23 H 1.08007 * 120.00086 * 46.72760 * 22 21 16 24 24 C 1.38807 * 120.00132 * 226.73485 * 22 21 16 25 25 N 1.31622 * 120.00275 * 209.26832 * 24 22 21 26 26 Si 1.86801 * 120.00039 * 29.26246 * 24 22 21 27 27 H 1.48500 * 109.47226 * 92.19061 * 26 24 22 28 28 H 1.48497 * 109.47153 * 212.19027 * 26 24 22 29 29 H 1.48501 * 109.47133 * 332.19457 * 26 24 22 30 30 H 1.08997 * 109.47065 * 59.99700 * 1 2 3 31 31 H 1.08994 * 109.47523 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.46901 * 299.99956 * 1 2 3 33 33 H 0.97001 * 120.00305 * 0.02562 * 5 3 2 34 34 H 1.09000 * 109.46948 * 300.00023 * 6 5 3 35 35 H 1.08996 * 109.47022 * 59.99832 * 6 5 3 36 36 H 1.09006 * 109.59137 * 353.37518 * 10 9 7 37 37 H 1.08994 * 109.58968 * 113.80100 * 10 9 7 38 38 H 1.08998 * 109.50093 * 65.31579 * 11 10 9 39 39 H 1.09005 * 109.50124 * 185.41348 * 11 10 9 40 40 H 1.08999 * 109.46265 * 181.38887 * 12 11 10 41 41 H 1.08996 * 109.45779 * 301.34421 * 12 11 10 42 42 H 1.08999 * 109.49790 * 58.59285 * 13 12 11 43 43 H 1.09007 * 109.49754 * 178.68441 * 13 12 11 44 44 H 1.08998 * 110.72817 * 336.75221 * 18 16 14 45 45 H 1.09001 * 110.72160 * 100.03046 * 18 16 14 46 46 H 1.09002 * 111.00745 * 153.57841 * 19 18 16 47 47 H 1.09011 * 111.00342 * 277.39094 * 19 18 16 48 48 H 1.09002 * 110.36157 * 81.82915 * 20 19 18 49 49 H 1.08996 * 110.37047 * 204.04468 * 20 19 18 50 50 H 0.96997 * 120.00311 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0633 1.1996 0.0000 4 8 1.4016 2.2186 0.0005 5 7 3.4092 1.2700 -0.0005 6 6 4.0744 2.5753 0.0000 7 6 5.5684 2.3778 -0.0013 8 8 6.0319 1.2570 -0.0032 9 7 6.3895 3.4466 -0.0006 10 6 5.8468 4.8075 -0.1105 11 6 6.5436 5.5239 -1.2715 12 6 8.0590 5.4663 -1.0654 13 6 8.5186 4.0066 -1.0529 14 6 7.8437 3.2733 0.1162 15 1 8.1870 3.6934 1.0615 16 6 8.1891 1.7839 0.0579 17 1 7.5346 1.2253 0.7269 18 6 9.6621 1.5704 0.4654 19 6 10.1312 0.4506 -0.5007 20 6 9.3513 0.8062 -1.7910 21 7 8.0412 1.2898 -1.3190 22 6 6.8787 1.2796 -2.0426 23 1 6.2522 2.1590 -2.0705 24 6 6.5053 0.1391 -2.7401 25 7 5.7849 0.2445 -3.8366 26 14 7.0253 -1.5455 -2.1226 27 1 5.9670 -2.0972 -1.2389 28 1 7.2288 -2.4553 -3.2785 29 1 8.2933 -1.4233 -1.3595 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.9375 0.4565 -0.0013 34 1 3.7812 3.1329 -0.8895 35 1 3.7819 3.1317 0.8905 36 1 4.7747 4.7591 -0.3018 37 1 6.0305 5.3502 0.8167 38 1 6.2852 5.0329 -2.2097 39 1 6.2202 6.5644 -1.3037 40 1 8.5564 5.9967 -1.8774 41 1 8.3143 5.9355 -0.1154 42 1 8.2416 3.5299 -1.9932 43 1 9.6010 3.9670 -0.9295 44 1 10.2411 2.4808 0.3105 45 1 9.7315 1.2396 1.5017 46 1 11.2071 0.5036 -0.6673 47 1 9.8437 -0.5327 -0.1281 48 1 9.8689 1.5909 -2.3430 49 1 9.2284 -0.0783 -2.4160 50 1 5.5237 -0.5525 -4.3238 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566955857.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:22 Heat of formation + Delta-G solvation = -58.683315 kcal Electronic energy + Delta-G solvation = -33210.832314 eV Core-core repulsion = 29047.210924 eV Total energy + Delta-G solvation = -4163.621391 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.90988 -41.32373 -38.90443 -38.00866 -37.59310 -35.63353 -34.41552 -33.63630 -32.55410 -31.52641 -29.67710 -28.75544 -27.73598 -26.14127 -25.38151 -23.93190 -22.54612 -22.02055 -21.78490 -20.92445 -20.39501 -19.34354 -18.70488 -18.09842 -17.78159 -17.56814 -16.95730 -16.74451 -16.42869 -15.98668 -15.59932 -15.32310 -15.10787 -15.04620 -14.83719 -14.67809 -14.43897 -14.25110 -14.02511 -13.83869 -13.76235 -13.53074 -13.13573 -12.97040 -12.95441 -12.63353 -12.54289 -12.33108 -12.17180 -11.89718 -11.85249 -11.82362 -11.75307 -11.58785 -11.48391 -11.47554 -11.23147 -11.11886 -10.38547 -10.29351 -9.66515 -9.13574 -8.11617 -7.97438 -5.26549 1.11404 1.38577 1.46038 1.57440 1.65233 1.92470 2.35357 2.62724 3.27308 3.32321 3.63043 3.67542 4.00521 4.08992 4.15850 4.22436 4.25892 4.27701 4.32451 4.32873 4.34627 4.38874 4.44364 4.57686 4.58964 4.64217 4.75277 4.80492 4.92198 5.01968 5.03772 5.04387 5.12601 5.14275 5.20085 5.26290 5.29648 5.30560 5.36455 5.43446 5.51685 5.70788 5.85042 6.02702 6.18979 6.28213 6.42898 6.74265 7.18155 7.20277 7.60080 7.81890 8.56601 9.17409 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.010320 B = 0.005729 C = 0.004281 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2712.485508 B = 4886.510188 C = 6538.862744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.383 6.383 3 C 0.650 3.350 4 O -0.601 6.601 5 N -0.691 5.691 6 C 0.130 3.870 7 C 0.483 3.517 8 O -0.488 6.488 9 N -0.602 5.602 10 C 0.106 3.894 11 C -0.131 4.131 12 C -0.110 4.110 13 C -0.118 4.118 14 C 0.149 3.851 15 H 0.088 0.912 16 C 0.128 3.872 17 H 0.070 0.930 18 C -0.121 4.121 19 C -0.126 4.126 20 C 0.123 3.877 21 N -0.594 5.594 22 C -0.138 4.138 23 H 0.048 0.952 24 C -0.018 4.018 25 N -0.948 5.948 26 Si 0.909 3.091 27 H -0.309 1.309 28 H -0.326 1.326 29 H -0.245 1.245 30 H 0.059 0.941 31 H 0.133 0.867 32 H 0.071 0.929 33 H 0.412 0.588 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.033 0.967 39 H 0.095 0.905 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.044 0.956 43 H 0.070 0.930 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.046 0.954 48 H 0.027 0.973 49 H 0.010 0.990 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.251 9.601 12.445 15.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 O -0.297 6.297 3 C 0.403 3.597 4 O -0.493 6.493 5 N -0.352 5.352 6 C 0.004 3.996 7 C 0.270 3.730 8 O -0.362 6.362 9 N -0.337 5.337 10 C -0.016 4.016 11 C -0.169 4.169 12 C -0.148 4.148 13 C -0.157 4.157 14 C 0.045 3.955 15 H 0.106 0.894 16 C 0.023 3.977 17 H 0.087 0.913 18 C -0.159 4.159 19 C -0.164 4.164 20 C -0.002 4.002 21 N -0.320 5.320 22 C -0.268 4.268 23 H 0.065 0.935 24 C -0.212 4.212 25 N -0.595 5.595 26 Si 0.741 3.259 27 H -0.238 1.238 28 H -0.255 1.255 29 H -0.169 1.169 30 H 0.078 0.922 31 H 0.151 0.849 32 H 0.089 0.911 33 H 0.250 0.750 34 H 0.100 0.900 35 H 0.132 0.868 36 H 0.100 0.900 37 H 0.114 0.886 38 H 0.052 0.948 39 H 0.113 0.887 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.107 0.893 47 H 0.065 0.935 48 H 0.044 0.956 49 H 0.029 0.971 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 0.984 9.376 12.299 15.497 hybrid contribution -0.250 -1.788 -0.773 1.963 sum 0.733 7.588 11.526 13.819 Atomic orbital electron populations 1.23530 0.72410 1.05620 1.02879 1.86283 1.26281 1.30310 1.86808 1.18034 0.83230 0.82353 0.76083 1.90921 1.65144 1.35396 1.57830 1.44382 1.03099 1.11158 1.76526 1.21052 0.90686 0.83661 1.04204 1.20024 0.88047 0.85412 0.79522 1.90754 1.74730 1.25250 1.45502 1.47720 1.06574 1.05808 1.73601 1.21897 0.98414 0.81660 0.99650 1.21863 0.96420 1.01046 0.97587 1.21471 0.95111 0.95753 1.02426 1.21865 0.99505 0.95347 0.98934 1.21878 0.78507 0.97402 0.97717 0.89439 1.22024 0.94574 0.92162 0.88911 0.91294 1.22678 0.95667 0.98709 0.98864 1.22685 0.99736 0.98297 0.95688 1.21859 0.87360 0.95533 0.95428 1.44668 1.03223 1.73495 1.10587 1.17902 0.97934 0.93836 1.17089 0.93494 1.25996 0.98007 0.99711 0.97520 1.70057 1.44380 1.28559 1.16519 0.86251 0.79007 0.83762 0.76863 1.23793 1.25506 1.16918 0.92177 0.84857 0.91054 0.75024 0.89990 0.86768 0.90008 0.88603 0.94829 0.88683 0.92126 0.90018 0.93730 0.91169 0.89752 0.90304 0.89270 0.93489 0.95556 0.97131 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.14 10.56 113.37 1.20 2.34 16 2 O -0.38 -12.89 10.62 -55.43 -0.59 -13.48 16 3 C 0.65 24.24 8.75 129.79 1.14 25.37 16 4 O -0.60 -23.60 16.13 19.82 0.32 -23.28 16 5 N -0.69 -26.04 5.53 -594.64 -3.29 -29.33 16 6 C 0.13 4.34 4.55 85.63 0.39 4.73 16 7 C 0.48 17.59 5.38 87.66 0.47 18.07 16 8 O -0.49 -21.36 8.30 -3.05 -0.03 -21.38 16 9 N -0.60 -18.19 2.56 -794.24 -2.04 -20.23 16 10 C 0.11 2.37 6.32 86.36 0.55 2.91 16 11 C -0.13 -3.01 6.08 30.67 0.19 -2.82 16 12 C -0.11 -2.43 5.88 30.62 0.18 -2.25 16 13 C -0.12 -3.41 4.96 30.82 0.15 -3.26 16 14 C 0.15 4.37 2.55 45.12 0.12 4.49 16 15 H 0.09 2.07 8.11 -2.39 -0.02 2.05 16 16 C 0.13 4.59 2.31 45.34 0.10 4.70 16 17 H 0.07 2.86 5.40 -48.00 -0.26 2.60 16 18 C -0.12 -3.41 6.33 31.78 0.20 -3.21 16 19 C -0.13 -4.08 6.97 31.99 0.22 -3.86 16 20 C 0.12 5.10 6.02 86.86 0.52 5.63 16 21 N -0.59 -26.37 1.15 -668.27 -0.77 -27.14 16 22 C -0.14 -7.30 5.66 84.03 0.48 -6.83 16 23 H 0.05 2.70 5.92 -2.91 -0.02 2.68 16 24 C -0.02 -1.03 5.33 84.86 0.45 -0.58 16 25 N -0.95 -60.10 13.97 21.65 0.30 -59.79 16 26 Si 0.91 48.94 26.82 68.60 1.84 50.78 16 27 H -0.31 -17.15 7.11 99.48 0.71 -16.44 16 28 H -0.33 -18.19 7.11 99.48 0.71 -17.48 16 29 H -0.25 -12.33 4.97 99.48 0.49 -11.84 16 30 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.13 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.41 16.94 7.55 -92.71 -0.70 16.24 16 34 H 0.08 2.88 7.48 -2.39 -0.02 2.87 16 35 H 0.11 3.11 8.11 -2.39 -0.02 3.09 16 36 H 0.08 1.78 5.96 -2.38 -0.01 1.76 16 37 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.09 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.04 1.76 6.55 -2.39 -0.02 1.74 16 43 H 0.07 1.83 7.00 -2.38 -0.02 1.81 16 44 H 0.08 1.99 6.66 -2.39 -0.02 1.98 16 45 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 47 H 0.05 1.67 7.40 -2.38 -0.02 1.65 16 48 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 49 H 0.01 0.49 5.44 -2.39 -0.01 0.48 16 50 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -75.30 371.37 1.91 -73.39 By element: Atomic # 1 Polarization: 25.22 SS G_CDS: -0.20 Total: 25.02 kcal Atomic # 6 Polarization: 39.10 SS G_CDS: 6.35 Total: 45.45 kcal Atomic # 7 Polarization: -130.70 SS G_CDS: -5.79 Total: -136.49 kcal Atomic # 8 Polarization: -57.85 SS G_CDS: -0.29 Total: -58.15 kcal Atomic # 14 Polarization: 48.94 SS G_CDS: 1.84 Total: 50.78 kcal Total: -75.30 1.91 -73.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566955857.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.706 kcal (2) G-P(sol) polarization free energy of solvation -75.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.908 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds