Wall clock time and date at job start Sat Apr 11 2020 05:47:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42899 * 113.99771 * 2 1 4 4 H 1.09000 * 109.47191 * 29.99757 * 3 2 1 5 5 C 1.50696 * 109.46997 * 269.99473 * 3 2 1 6 6 O 1.21277 * 120.00359 * 355.00608 * 5 3 2 7 7 N 1.34775 * 119.99882 * 175.00189 * 5 3 2 8 8 C 1.46504 * 120.00063 * 180.02562 * 7 5 3 9 9 C 1.53003 * 109.47166 * 184.89174 * 8 7 5 10 10 H 1.08999 * 110.36939 * 52.32231 * 9 8 7 11 11 C 1.54382 * 110.50725 * 289.90115 * 9 8 7 12 12 C 1.54257 * 105.05733 * 217.31650 * 11 9 8 13 13 C 1.54383 * 105.06392 * 0.02562 * 12 11 9 14 14 N 1.48554 * 104.59218 * 23.84978 * 13 12 11 15 15 C 1.46901 * 111.00197 * 200.96064 * 14 13 12 16 16 C 1.50704 * 109.47136 * 279.71306 * 15 14 13 17 17 O 1.21295 * 119.99602 * 359.97438 * 16 15 14 18 18 N 1.34774 * 120.00295 * 179.97438 * 16 15 14 19 19 C 1.37089 * 120.00006 * 179.97438 * 18 16 15 20 20 H 1.08000 * 120.00520 * 0.02562 * 19 18 16 21 21 C 1.38963 * 119.99926 * 179.72178 * 19 18 16 22 22 N 1.31413 * 119.99882 * 0.27634 * 21 19 18 23 23 Si 1.86797 * 120.00063 * 180.27685 * 21 19 18 24 24 H 1.48501 * 109.47078 * 60.00124 * 23 21 19 25 25 H 1.48500 * 109.47216 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47121 * 300.00034 * 23 21 19 27 27 C 1.53004 * 109.46950 * 149.99578 * 3 2 1 28 28 C 1.52998 * 117.49903 * 8.62437 * 27 3 2 29 29 C 1.52996 * 117.50010 * 300.00033 * 27 3 2 30 30 H 1.08995 * 109.47405 * 300.00219 * 1 2 3 31 31 H 1.09007 * 109.46566 * 60.00203 * 1 2 3 32 32 H 1.08998 * 109.46825 * 180.02562 * 1 2 3 33 33 H 0.97002 * 120.00232 * 359.97438 * 7 5 3 34 34 H 1.08998 * 109.47620 * 64.88896 * 8 7 5 35 35 H 1.09004 * 109.47173 * 304.88769 * 8 7 5 36 36 H 1.08993 * 110.32521 * 336.21835 * 11 9 8 37 37 H 1.09007 * 110.32143 * 98.42768 * 11 9 8 38 38 H 1.09003 * 110.32042 * 118.90408 * 12 11 9 39 39 H 1.09006 * 110.32920 * 241.10307 * 12 11 9 40 40 H 1.08998 * 110.41122 * 265.07165 * 13 12 11 41 41 H 1.09005 * 110.40994 * 142.63092 * 13 12 11 42 42 H 1.08998 * 109.47236 * 159.70993 * 15 14 13 43 43 H 1.08998 * 109.46806 * 39.70806 * 15 14 13 44 44 H 0.96997 * 119.99499 * 359.97438 * 18 16 15 45 45 H 0.96994 * 119.99871 * 180.02562 * 22 21 19 46 46 H 1.08996 * 115.54589 * 154.32713 * 27 3 2 47 47 H 1.09005 * 117.50088 * 359.97438 * 28 27 3 48 48 H 1.08996 * 117.50543 * 145.01945 * 28 27 3 49 49 H 1.09002 * 117.49779 * 214.97519 * 29 27 3 50 50 H 1.08998 * 117.49748 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2146 1.7643 -1.4208 6 8 1.9793 1.0106 -2.3413 7 7 2.6590 3.0123 -1.6685 8 6 2.8572 3.4586 -3.0498 9 6 3.4771 4.8574 -3.0499 10 1 4.3700 4.8767 -2.4251 11 6 2.4531 5.9028 -2.5580 12 6 2.7128 7.1549 -3.4208 13 6 3.8715 6.7606 -4.3617 14 7 3.8048 5.2784 -4.4366 15 6 5.0911 4.7147 -4.8675 16 6 5.2130 4.8287 -6.3653 17 8 4.3163 5.3298 -7.0103 18 7 6.3183 4.3738 -6.9880 19 6 6.4290 4.4771 -8.3505 20 1 5.6306 4.9233 -8.9249 21 6 7.5711 4.0134 -8.9920 22 7 8.5428 3.4709 -8.2931 23 14 7.7252 4.1611 -10.8478 24 1 7.6503 5.5919 -11.2383 25 1 9.0279 3.5963 -11.2828 26 1 6.6197 3.4121 -11.4974 27 6 3.3589 1.2633 0.7214 28 6 3.9139 -0.1108 1.1018 29 6 3.3634 0.8187 2.1853 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 2.8468 3.6154 -0.9324 34 1 1.8965 3.4870 -3.5640 35 1 3.5238 2.7658 -3.5634 36 1 1.4372 5.5400 -2.7135 37 1 2.6184 6.1282 -1.5044 38 1 1.8242 7.4067 -3.9997 39 1 3.0055 7.9949 -2.7907 40 1 4.8264 7.0775 -3.9424 41 1 3.7249 7.1981 -5.3493 42 1 5.1433 3.6652 -4.5775 43 1 5.9051 5.2634 -4.3939 44 1 7.0355 3.9734 -6.4721 45 1 9.3402 3.1476 -8.7408 46 1 4.0740 2.0311 0.4263 47 1 3.3180 -0.9848 0.8386 48 1 4.9943 -0.2473 1.0571 49 1 4.0819 1.2938 2.8533 50 1 2.4056 0.5567 2.6347 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001567363686.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:31 Heat of formation + Delta-G solvation = -81.085678 kcal Electronic energy + Delta-G solvation = -29837.048218 eV Core-core repulsion = 25672.455388 eV Total energy + Delta-G solvation = -4164.592830 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.46292 -39.37091 -38.10579 -37.53047 -36.45917 -34.75090 -33.86125 -32.04575 -31.09602 -30.63142 -28.74066 -26.76311 -26.56200 -24.80216 -24.05699 -22.66913 -21.81488 -21.14606 -20.37752 -20.26097 -19.15300 -17.94948 -17.84253 -17.09347 -16.51430 -16.07120 -15.89793 -15.51486 -15.31888 -15.06439 -14.69912 -14.59245 -14.40025 -14.31924 -13.83661 -13.75590 -13.43493 -13.35026 -13.05033 -12.65454 -12.29980 -12.02000 -11.93834 -11.88373 -11.73913 -11.67313 -11.44592 -11.20017 -11.13692 -10.99938 -10.92821 -10.86271 -10.74404 -10.52251 -10.49791 -10.40926 -10.17266 -9.44665 -9.43440 -9.17479 -8.55206 -8.02753 -7.91254 -6.37356 -3.77930 2.40697 2.77534 3.23255 3.28495 3.32699 3.35257 3.52805 3.94294 4.01524 4.23309 4.28518 4.43213 4.50683 4.53033 4.60658 4.77774 4.81862 4.89524 4.94638 5.05475 5.12386 5.16371 5.18071 5.24317 5.29029 5.33811 5.40699 5.43441 5.55373 5.61315 5.68318 5.75199 5.75670 5.83195 5.86237 5.96024 5.99056 6.01742 6.16379 6.24896 6.32973 6.34299 6.64660 7.05319 7.16766 7.32182 7.59111 8.07852 8.10353 8.66694 9.22748 9.59191 10.11572 10.80571 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.012284 B = 0.002370 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2278.783961 B =11813.067257 C =12992.805170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.106 3.894 4 H 0.089 0.911 5 C 0.492 3.508 6 O -0.518 6.518 7 N -0.726 5.726 8 C 0.133 3.867 9 C 0.048 3.952 10 H 0.056 0.944 11 C -0.118 4.118 12 C -0.123 4.123 13 C 0.039 3.961 14 N -0.474 5.474 15 C 0.032 3.968 16 C 0.447 3.553 17 O -0.575 6.575 18 N -0.566 5.566 19 C -0.297 4.297 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C -0.164 4.164 28 C -0.157 4.157 29 C -0.169 4.169 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.090 0.910 33 H 0.397 0.603 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.065 0.935 40 H 0.040 0.960 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.053 0.947 44 H 0.391 0.609 45 H 0.271 0.729 46 H 0.119 0.881 47 H 0.109 0.891 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.919 -0.232 24.933 27.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.044 3.956 4 H 0.106 0.894 5 C 0.276 3.724 6 O -0.392 6.392 7 N -0.381 5.381 8 C 0.009 3.991 9 C -0.061 4.061 10 H 0.074 0.926 11 C -0.156 4.156 12 C -0.161 4.161 13 C -0.088 4.088 14 N -0.198 5.198 15 C -0.100 4.100 16 C 0.232 3.768 17 O -0.458 6.458 18 N -0.204 5.204 19 C -0.427 4.427 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.757 3.243 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.183 4.183 28 C -0.194 4.194 29 C -0.206 4.206 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.231 0.769 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.084 0.916 40 H 0.058 0.942 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.071 0.929 44 H 0.224 0.776 45 H 0.081 0.919 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.113 0.887 49 H 0.115 0.885 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -11.807 -0.910 23.329 26.162 hybrid contribution 1.288 0.586 0.198 1.429 sum -10.519 -0.325 23.527 25.774 Atomic orbital electron populations 1.22882 0.80498 1.03377 1.00056 1.87989 1.20072 1.24742 1.94343 1.21407 0.95343 0.86870 0.91962 0.89350 1.21200 0.77536 0.81685 0.91949 1.90758 1.49115 1.53450 1.45904 1.45980 1.68416 1.14418 1.09278 1.21257 1.01949 0.94218 0.81671 1.22841 0.97591 0.94255 0.91449 0.92628 1.22362 0.99454 0.95081 0.98744 1.22290 0.99335 0.96981 0.97490 1.23141 0.96646 0.87992 1.01045 1.64913 1.29704 1.06473 1.18758 1.22116 0.90354 1.00758 0.96743 1.19653 0.84214 0.84821 0.88130 1.90517 1.40170 1.48486 1.66637 1.41847 1.16777 1.53761 1.07976 1.19638 1.03439 1.37481 0.82145 0.88006 1.25252 0.95318 0.96904 1.00512 1.69604 1.07651 1.40682 1.36561 0.85926 0.77365 0.78680 0.82295 1.19961 1.21011 1.19883 1.22268 0.96547 1.01443 0.98004 1.22901 1.00960 0.93967 1.01590 1.22965 1.03240 1.03932 0.90459 0.93986 0.93479 0.89111 0.76884 0.90479 0.90811 0.90766 0.91559 0.90874 0.91581 0.94224 0.88729 0.89463 0.92919 0.77577 0.91876 0.86262 0.87308 0.88654 0.88451 0.88607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 10.81 101.05 1.09 1.32 16 2 O -0.35 -3.78 8.24 -55.09 -0.45 -4.24 16 3 C 0.11 0.95 2.87 -27.88 -0.08 0.87 16 4 H 0.09 0.56 7.79 -51.93 -0.40 0.15 16 5 C 0.49 5.98 7.12 -10.99 -0.08 5.90 16 6 O -0.52 -8.96 16.50 -14.30 -0.24 -9.19 16 7 N -0.73 -7.17 5.34 -60.29 -0.32 -7.49 16 8 C 0.13 1.70 5.26 -4.04 -0.02 1.68 16 9 C 0.05 0.57 2.29 -66.06 -0.15 0.42 16 10 H 0.06 0.59 8.00 -51.93 -0.42 0.18 16 11 C -0.12 -1.14 6.34 -25.35 -0.16 -1.30 16 12 C -0.12 -1.34 7.00 -25.35 -0.18 -1.52 16 13 C 0.04 0.58 6.07 -2.18 -0.01 0.57 16 14 N -0.47 -7.70 4.56 -223.55 -1.02 -8.72 16 15 C 0.03 0.58 5.31 -4.97 -0.03 0.55 16 16 C 0.45 10.75 7.69 -10.98 -0.08 10.66 16 17 O -0.57 -15.84 15.29 5.54 0.08 -15.75 16 18 N -0.57 -14.66 5.29 -10.96 -0.06 -14.71 16 19 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 22 N -0.90 -25.03 13.05 55.50 0.72 -24.30 16 23 Si 0.93 21.48 29.55 -169.99 -5.02 16.46 16 24 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 27 C -0.16 -1.26 5.67 -90.62 -0.51 -1.78 16 28 C -0.16 -1.30 9.87 -26.73 -0.26 -1.56 16 29 C -0.17 -1.06 10.19 -26.73 -0.27 -1.33 16 30 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 32 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.40 2.58 8.38 -40.82 -0.34 2.24 16 34 H 0.08 1.12 7.97 -51.93 -0.41 0.70 16 35 H 0.07 1.14 7.17 -51.93 -0.37 0.76 16 36 H 0.07 0.73 7.74 -51.93 -0.40 0.33 16 37 H 0.07 0.47 8.14 -51.92 -0.42 0.04 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.04 0.55 7.67 -51.93 -0.40 0.15 16 41 H 0.09 1.66 7.65 -51.93 -0.40 1.26 16 42 H 0.09 1.47 7.01 -51.93 -0.36 1.11 16 43 H 0.05 0.85 7.64 -51.93 -0.40 0.46 16 44 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 45 H 0.27 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.12 0.80 8.03 -51.93 -0.42 0.38 16 47 H 0.11 1.04 7.06 -51.93 -0.37 0.68 16 48 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 409.53 15.07 6.17 6.17 Total: -1.00 -35.37 409.53 -9.45 -44.82 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.32 Total: 10.59 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -0.99 Total: 6.38 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: -0.68 Total: -55.23 kcal Atomic # 8 Polarization: -28.57 SS G_CDS: -0.61 Total: -29.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -35.37 -9.45 -44.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567363686.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.265 kcal (2) G-P(sol) polarization free energy of solvation -35.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds