Wall clock time and date at job start Sat Apr 11 2020 05:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46509 * 120.00061 * 2 1 4 4 C 1.52997 * 109.47039 * 270.00051 * 3 2 1 5 5 N 1.46904 * 109.46785 * 180.02562 * 4 3 2 6 6 C 1.46898 * 110.99683 * 294.29712 * 5 4 3 7 7 C 1.53239 * 109.33892 * 172.75006 * 6 5 4 8 8 N 1.47081 * 108.51952 * 53.82970 * 7 6 5 9 9 C 1.36943 * 120.88064 * 128.84014 * 8 7 6 10 10 H 1.08001 * 119.99946 * 210.01056 * 9 8 7 11 11 C 1.38813 * 119.99998 * 30.00384 * 9 8 7 12 12 N 1.31620 * 120.00199 * 10.15050 * 11 9 8 13 13 Si 1.86799 * 119.99786 * 190.14772 * 11 9 8 14 14 H 1.48497 * 109.47058 * 60.00533 * 13 11 9 15 15 H 1.48504 * 109.47014 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47182 * 300.00278 * 13 11 9 17 17 C 1.47076 * 118.23856 * 308.81297 * 8 7 6 18 18 C 1.46898 * 110.99816 * 169.99832 * 5 4 3 19 19 C 1.34778 * 120.00148 * 179.97438 * 2 1 3 20 20 O 1.21599 * 120.00049 * 176.39258 * 19 2 1 21 21 C 1.47293 * 119.99808 * 356.39134 * 19 2 1 22 22 F 1.35101 * 119.99853 * 6.18060 * 21 19 2 23 23 C 1.33110 * 120.00154 * 186.17901 * 21 19 2 24 24 C 1.51454 * 126.34175 * 359.69140 * 23 21 19 25 25 C 1.54274 * 106.85175 * 180.24372 * 24 23 21 26 26 C 1.54975 * 103.66380 * 23.48128 * 25 24 23 27 27 C 1.51839 * 126.34412 * 180.02562 * 23 21 19 28 28 H 1.08999 * 109.47212 * 95.87012 * 1 2 3 29 29 H 1.08993 * 109.47469 * 215.87157 * 1 2 3 30 30 H 1.08998 * 109.47054 * 335.87367 * 1 2 3 31 31 H 1.09008 * 109.46792 * 30.00057 * 3 2 1 32 32 H 1.08999 * 109.47009 * 149.99210 * 3 2 1 33 33 H 1.09005 * 109.46898 * 299.99430 * 4 3 2 34 34 H 1.08992 * 109.47524 * 59.99855 * 4 3 2 35 35 H 1.09006 * 109.49276 * 292.70874 * 6 5 4 36 36 H 1.08997 * 109.49554 * 52.78790 * 6 5 4 37 37 H 1.08991 * 109.62886 * 294.12076 * 7 6 5 38 38 H 1.08998 * 109.63158 * 173.53700 * 7 6 5 39 39 H 0.96993 * 120.00204 * 179.97438 * 12 11 9 40 40 H 1.08999 * 109.63115 * 291.47766 * 17 8 7 41 41 H 1.09005 * 109.78738 * 170.98770 * 17 8 7 42 42 H 1.09000 * 109.49361 * 307.20842 * 18 5 4 43 43 H 1.09005 * 109.49626 * 67.28770 * 18 5 4 44 44 H 1.09002 * 109.97947 * 299.72539 * 24 23 21 45 45 H 1.08995 * 109.98132 * 61.02609 * 24 23 21 46 46 H 1.09007 * 110.79071 * 264.85288 * 25 24 23 47 47 H 1.09001 * 110.42929 * 141.93716 * 25 24 23 48 48 H 1.08999 * 110.83350 * 204.49513 * 26 25 24 49 49 H 1.09002 * 110.83486 * 80.91006 * 26 25 24 50 50 H 1.09001 * 110.44376 * 274.92754 * 27 23 21 51 51 H 1.08996 * 110.44203 * 37.32755 * 27 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 7 3.1876 2.9824 -1.4424 6 6 2.3688 4.0635 -0.8779 7 6 3.2266 5.3244 -0.7281 8 7 3.8446 5.6262 -2.0282 9 6 3.7497 6.8768 -2.5781 10 1 3.7473 6.9959 -3.6515 11 6 3.6565 7.9913 -1.7559 12 7 3.8588 7.8725 -0.4608 13 14 3.2440 9.6598 -2.4875 14 1 1.9186 9.5940 -3.1541 15 1 3.2040 10.6779 -1.4071 16 1 4.2806 10.0338 -3.4828 17 6 4.5676 4.5495 -2.7217 18 6 3.6570 3.3191 -2.7930 19 6 2.1389 -1.1672 0.0005 20 8 3.3531 -1.1682 -0.0657 21 6 1.4046 -2.4415 0.0814 22 9 0.0546 -2.4477 0.0291 23 6 2.0711 -3.5870 0.2059 24 6 3.5757 -3.7473 0.2720 25 6 3.8589 -5.2576 0.4094 26 6 2.5901 -5.9232 -0.1812 27 6 1.4641 -4.9755 0.3010 28 1 -0.3633 -0.1051 -1.0223 29 1 -0.3634 -0.8327 0.6021 30 1 -0.3633 0.9379 0.4201 31 1 1.6084 2.0285 0.5139 32 1 3.1499 1.1385 0.5140 33 1 3.0417 0.9508 -1.9563 34 1 1.5002 1.8408 -1.9563 35 1 1.5308 4.2706 -1.5435 36 1 1.9917 3.7619 0.0993 37 1 4.0043 5.1519 0.0158 38 1 2.5987 6.1598 -0.4184 39 1 3.7941 8.6513 0.1137 40 1 5.4743 4.3025 -2.1694 41 1 4.8290 4.8705 -3.7301 42 1 4.2143 2.4776 -3.2047 43 1 2.8011 3.5365 -3.4320 44 1 4.0317 -3.3622 -0.6401 45 1 3.9692 -3.2162 1.1386 46 1 3.9845 -5.5340 1.4563 47 1 4.7407 -5.5335 -0.1689 48 1 2.4535 -6.9256 0.2246 49 1 2.6360 -5.9475 -1.2700 50 1 1.1915 -5.2021 1.3318 51 1 0.5925 -5.0552 -0.3486 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001567717083.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:38 Heat of formation + Delta-G solvation = -43.334554 kcal Electronic energy + Delta-G solvation = -30069.662986 eV Core-core repulsion = 25919.079957 eV Total energy + Delta-G solvation = -4150.583029 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.11470 -41.11288 -39.76630 -38.91147 -37.08175 -35.94738 -33.46610 -32.41420 -31.66907 -30.77873 -29.79446 -28.15470 -27.80004 -26.08502 -24.95601 -24.25247 -23.17623 -21.89709 -21.22915 -20.86283 -19.80059 -18.78224 -18.35139 -17.76305 -17.37633 -17.14337 -16.77580 -16.46702 -16.25376 -16.15756 -15.73229 -15.52045 -15.30885 -15.09825 -14.96317 -14.76641 -14.48967 -14.28036 -14.11462 -13.92676 -13.53641 -13.27987 -13.25360 -13.06255 -12.89097 -12.80767 -12.64805 -12.48425 -12.38208 -12.15828 -12.04965 -12.02092 -11.98209 -11.86222 -11.59073 -11.50110 -11.41742 -10.93861 -10.60078 -10.16177 -9.68441 -9.29928 -8.64405 -7.87200 -5.37919 0.03251 1.46508 1.48645 1.55655 1.70675 1.87748 2.49829 2.88654 3.07017 3.19633 3.29284 3.66219 3.67646 3.83615 3.97533 4.03259 4.12867 4.21174 4.23534 4.27305 4.32194 4.42082 4.43618 4.49844 4.56596 4.61557 4.63605 4.67463 4.74253 4.77501 4.83419 4.87751 4.92782 4.94838 5.00266 5.02053 5.04055 5.12786 5.17755 5.20256 5.30865 5.36109 5.42562 5.43917 5.59922 5.69982 6.12704 6.17052 6.22415 6.39153 6.86754 7.13782 7.82022 8.38244 9.19088 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.028498 B = 0.002024 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.283040 B =13833.528696 C =14301.861972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.052 3.948 2 N -0.606 5.606 3 C 0.126 3.874 4 C 0.056 3.944 5 N -0.541 5.541 6 C 0.049 3.951 7 C 0.186 3.814 8 N -0.615 5.615 9 C -0.266 4.266 10 H 0.066 0.934 11 C -0.051 4.051 12 N -0.937 5.937 13 Si 0.974 3.026 14 H -0.277 1.277 15 H -0.292 1.292 16 H -0.276 1.276 17 C 0.145 3.855 18 C 0.058 3.942 19 C 0.541 3.459 20 O -0.548 6.548 21 C -0.029 4.029 22 F -0.126 7.126 23 C -0.062 4.062 24 C -0.085 4.085 25 C -0.124 4.124 26 C -0.118 4.118 27 C -0.095 4.095 28 H 0.062 0.938 29 H 0.105 0.895 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.035 0.965 35 H 0.021 0.979 36 H 0.086 0.914 37 H -0.003 1.003 38 H 0.061 0.939 39 H 0.251 0.749 40 H 0.014 0.986 41 H 0.062 0.938 42 H 0.085 0.915 43 H 0.025 0.975 44 H 0.076 0.924 45 H 0.074 0.926 46 H 0.081 0.919 47 H 0.079 0.921 48 H 0.096 0.904 49 H 0.072 0.928 50 H 0.106 0.894 51 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.909 -29.154 2.585 30.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 N -0.338 5.338 3 C 0.003 3.997 4 C -0.073 4.073 5 N -0.266 5.266 6 C -0.080 4.080 7 C 0.060 3.940 8 N -0.339 5.339 9 C -0.396 4.396 10 H 0.084 0.916 11 C -0.246 4.246 12 N -0.582 5.582 13 Si 0.801 3.199 14 H -0.203 1.203 15 H -0.218 1.218 16 H -0.202 1.202 17 C 0.020 3.980 18 C -0.072 4.072 19 C 0.330 3.670 20 O -0.428 6.428 21 C -0.051 4.051 22 F -0.105 7.105 23 C -0.065 4.065 24 C -0.122 4.122 25 C -0.161 4.161 26 C -0.156 4.156 27 C -0.132 4.132 28 H 0.081 0.919 29 H 0.123 0.877 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.039 0.961 36 H 0.104 0.896 37 H 0.016 0.984 38 H 0.080 0.920 39 H 0.060 0.940 40 H 0.032 0.968 41 H 0.080 0.920 42 H 0.104 0.896 43 H 0.043 0.957 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.100 0.900 47 H 0.098 0.902 48 H 0.114 0.886 49 H 0.090 0.910 50 H 0.124 0.876 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.932 -29.035 2.951 30.243 hybrid contribution -0.927 1.680 -0.761 2.064 sum -8.858 -27.355 2.189 28.837 Atomic orbital electron populations 1.22628 0.76953 1.05790 1.03532 1.47853 1.08620 1.05227 1.72062 1.21421 0.97781 0.84035 0.96423 1.22277 0.96445 0.91240 0.97379 1.61815 1.39686 1.02500 1.22638 1.22683 0.94299 0.92072 0.98928 1.20645 0.93777 0.93372 0.86211 1.44360 1.60652 1.07702 1.21206 1.19485 1.44881 0.83848 0.91411 0.91644 1.25949 1.01014 1.01387 0.96274 1.70135 1.53978 1.29815 1.04307 0.85256 0.78373 0.79142 0.77104 1.20265 1.21827 1.20183 1.21101 0.93022 0.87854 0.96070 1.22436 0.98044 0.98225 0.88456 1.18566 0.87133 0.84121 0.77196 1.90828 1.13817 1.86940 1.51182 1.18557 0.77200 0.93259 1.16075 1.91351 1.28030 1.96476 1.94668 1.23420 0.98618 0.94398 0.90052 1.21202 0.89800 0.98262 1.02889 1.22482 0.98934 0.92319 1.02398 1.22547 0.92903 0.98989 1.01115 1.21640 0.99217 0.88515 1.03794 0.91911 0.87729 0.89556 0.88814 0.90741 0.91642 0.94683 0.96055 0.89595 0.98444 0.92035 0.93968 0.96798 0.91995 0.89634 0.95653 0.90586 0.90736 0.90042 0.90199 0.88557 0.90969 0.87581 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.89 9.60 127.77 1.23 2.12 16 2 N -0.61 -14.34 2.87 -850.83 -2.44 -16.79 16 3 C 0.13 3.40 5.35 86.38 0.46 3.86 16 4 C 0.06 1.66 5.29 86.30 0.46 2.12 16 5 N -0.54 -19.76 4.63 -895.25 -4.14 -23.91 16 6 C 0.05 1.92 5.46 86.38 0.47 2.40 16 7 C 0.19 9.36 5.36 86.35 0.46 9.83 16 8 N -0.61 -32.47 3.03 -698.14 -2.12 -34.59 16 9 C -0.27 -15.05 9.63 84.03 0.81 -14.24 16 10 H 0.07 3.59 7.85 -2.91 -0.02 3.56 16 11 C -0.05 -2.90 5.08 84.86 0.43 -2.46 16 12 N -0.94 -56.20 10.99 21.65 0.24 -55.96 16 13 Si 0.97 45.37 29.57 68.60 2.03 47.39 16 14 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 15 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 16 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 17 C 0.15 6.47 6.69 86.35 0.58 7.05 16 18 C 0.06 2.14 5.62 86.38 0.49 2.62 16 19 C 0.54 14.04 7.61 86.62 0.66 14.70 16 20 O -0.55 -17.38 13.77 -4.03 -0.06 -17.44 16 21 C -0.03 -0.60 7.17 23.50 0.17 -0.43 16 22 F -0.13 -2.28 13.22 44.97 0.59 -1.69 16 23 C -0.06 -1.07 6.16 -17.00 -0.10 -1.18 16 24 C -0.08 -1.50 4.83 30.52 0.15 -1.35 16 25 C -0.12 -1.34 6.88 31.70 0.22 -1.12 16 26 C -0.12 -0.99 6.94 31.91 0.22 -0.77 16 27 C -0.10 -1.01 6.44 30.85 0.20 -0.81 16 28 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.10 1.59 5.29 -2.39 -0.01 1.58 16 30 H 0.09 1.24 7.83 -2.39 -0.02 1.23 16 31 H 0.09 2.29 6.12 -2.38 -0.01 2.27 16 32 H 0.07 2.33 7.47 -2.39 -0.02 2.32 16 33 H 0.07 2.05 7.97 -2.38 -0.02 2.03 16 34 H 0.03 1.00 8.12 -2.39 -0.02 0.98 16 35 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 36 H 0.09 2.90 6.16 -2.39 -0.01 2.88 16 37 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 38 H 0.06 3.43 6.16 -2.39 -0.01 3.41 16 39 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 40 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.06 2.62 7.96 -2.38 -0.02 2.60 16 42 H 0.09 2.76 7.99 -2.39 -0.02 2.74 16 43 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 44 H 0.08 1.63 7.55 -2.39 -0.02 1.61 16 45 H 0.07 1.53 7.82 -2.39 -0.02 1.51 16 46 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 47 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.01 395.66 1.90 -67.11 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 0.91 Total: 13.53 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 6.89 Total: 22.33 kcal Atomic # 7 Polarization: -122.77 SS G_CDS: -8.47 Total: -131.24 kcal Atomic # 8 Polarization: -17.38 SS G_CDS: -0.06 Total: -17.44 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.59 Total: -1.69 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.39 kcal Total: -69.01 1.90 -67.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001567717083.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.777 kcal (2) G-P(sol) polarization free energy of solvation -69.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds