Wall clock time and date at job start Sat Apr 11 2020 05:47:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42894 * 113.99920 * 2 1 4 4 C 1.50700 * 109.47261 * 179.97438 * 3 2 1 5 5 O 1.21287 * 119.99863 * 0.02562 * 4 3 2 6 6 N 1.34777 * 120.00294 * 179.71873 * 4 3 2 7 7 C 1.46499 * 120.00150 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.47338 * 180.02562 * 7 6 4 9 9 C 1.50698 * 109.47673 * 180.02562 * 8 7 6 10 10 O 1.21291 * 119.99487 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00662 * 179.97438 * 9 8 7 12 12 C 1.46943 * 120.44267 * 179.97438 * 11 9 8 13 13 C 1.53598 * 108.52708 * 125.75688 * 12 11 9 14 14 H 1.09000 * 110.59644 * 172.15854 * 13 12 11 15 15 C 1.53369 * 108.68386 * 294.35543 * 13 12 11 16 16 C 1.53002 * 109.27192 * 60.29739 * 15 13 12 17 17 C 1.53017 * 109.79675 * 60.56730 * 16 15 13 18 18 C 1.53370 * 109.25235 * 299.42136 * 17 16 15 19 19 H 1.09006 * 111.08002 * 177.82771 * 18 17 16 20 20 C 1.46946 * 120.43713 * 359.72893 * 11 9 8 21 21 N 1.47564 * 107.76912 * 51.14311 * 13 12 11 22 22 C 1.36935 * 121.61197 * 120.46431 * 21 13 12 23 23 H 1.08001 * 119.99927 * 332.12827 * 22 21 13 24 24 C 1.38815 * 120.00220 * 152.13468 * 22 21 13 25 25 N 1.31611 * 120.00132 * 145.67153 * 24 22 21 26 26 Si 1.86805 * 119.99919 * 325.67143 * 24 22 21 27 27 H 1.48497 * 109.46962 * 84.61692 * 26 24 22 28 28 H 1.48495 * 109.46898 * 204.61867 * 26 24 22 29 29 H 1.48498 * 109.46863 * 324.61997 * 26 24 22 30 30 H 1.09001 * 109.47018 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47616 * 300.00422 * 1 2 3 32 32 H 1.09005 * 109.46689 * 60.00527 * 1 2 3 33 33 H 1.09010 * 109.47176 * 59.99717 * 3 2 1 34 34 H 1.08997 * 109.47283 * 299.99586 * 3 2 1 35 35 H 0.97001 * 119.99952 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.47075 * 300.00723 * 7 6 4 37 37 H 1.09004 * 109.46899 * 60.00233 * 7 6 4 38 38 H 1.09001 * 109.47213 * 300.00130 * 8 7 6 39 39 H 1.09004 * 109.47350 * 60.00001 * 8 7 6 40 40 H 1.09005 * 109.62719 * 245.46348 * 12 11 9 41 41 H 1.08994 * 109.62830 * 6.03896 * 12 11 9 42 42 H 1.09003 * 109.50208 * 180.23633 * 15 13 12 43 43 H 1.09004 * 109.50703 * 300.35569 * 15 13 12 44 44 H 1.09008 * 109.41604 * 300.46855 * 16 15 13 45 45 H 1.08997 * 109.42147 * 180.66581 * 16 15 13 46 46 H 1.09002 * 109.50829 * 179.48880 * 17 16 15 47 47 H 1.09001 * 109.54042 * 59.37895 * 17 16 15 48 48 H 1.08997 * 109.62874 * 353.94937 * 20 11 9 49 49 H 1.08999 * 109.62780 * 114.52266 * 20 11 9 50 50 H 0.97006 * 120.00065 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0915 0.0006 6 7 4.2765 2.2968 -0.0050 7 6 5.7369 2.1811 -0.0049 8 6 6.3592 3.5788 -0.0112 9 6 7.8615 3.4599 -0.0118 10 8 8.3831 2.3649 -0.0081 11 7 8.6255 4.5702 -0.0176 12 6 10.0912 4.4654 -0.0176 13 6 10.6382 5.2737 -1.2037 14 1 11.7255 5.3343 -1.1574 15 6 10.1775 4.6078 -2.5062 16 6 8.6483 4.5937 -2.5527 17 6 8.1153 6.0275 -2.5122 18 6 8.5677 6.6985 -1.2094 19 1 8.2357 7.7359 -1.1669 20 6 8.0037 5.9016 -0.0293 21 7 10.0399 6.6213 -1.1444 22 6 10.8135 7.7458 -1.0341 23 1 11.7788 7.6921 -0.5528 24 6 10.3570 8.9548 -1.5409 25 7 10.6587 10.0806 -0.9295 26 14 9.3143 8.9840 -3.0905 27 1 7.8918 8.7496 -2.7345 28 1 9.4475 10.3068 -3.7520 29 1 9.7747 7.9186 -4.0169 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6885 1.8464 0.8900 34 1 1.6887 1.8463 -0.8900 35 1 3.8593 3.1725 -0.0091 36 1 6.0588 1.6444 0.8875 37 1 6.0582 1.6360 -0.8925 38 1 6.0373 4.1158 -0.9035 39 1 6.0379 4.1237 0.8765 40 1 10.4871 4.8691 0.9143 41 1 10.3835 3.4205 -0.1206 42 1 10.5624 5.1690 -3.3577 43 1 10.5523 3.5849 -2.5444 44 1 8.2648 4.0402 -1.6955 45 1 8.3181 4.1103 -3.4721 46 1 7.0262 6.0123 -2.5547 47 1 8.5051 6.5855 -3.3636 48 1 6.9241 5.8006 -0.1401 49 1 8.2320 6.4204 0.9017 50 1 10.3399 10.9255 -1.2838 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569459421.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:57 Heat of formation + Delta-G solvation = -54.650464 kcal Electronic energy + Delta-G solvation = -31227.084728 eV Core-core repulsion = 27063.638215 eV Total energy + Delta-G solvation = -4163.446513 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.01536 -39.98772 -38.23626 -37.74943 -35.33906 -34.17080 -33.01012 -32.53824 -31.36193 -30.96163 -29.09688 -27.22286 -26.36751 -25.90583 -24.01813 -23.11252 -22.11649 -21.46612 -21.05335 -19.60041 -18.36193 -17.71768 -17.45252 -17.03088 -16.74277 -16.49858 -15.81137 -15.75918 -15.28808 -15.14331 -14.93567 -14.63632 -14.26977 -13.98212 -13.85943 -13.43785 -13.38029 -13.25665 -13.07734 -12.84995 -12.62489 -12.35248 -12.19050 -12.06003 -11.89875 -11.89401 -11.66346 -11.46933 -11.24585 -10.90244 -10.52812 -10.41578 -10.24439 -10.21270 -10.10707 -9.99420 -9.88911 -9.51414 -9.47127 -9.34878 -8.71821 -8.06559 -7.00623 -6.15620 -3.37431 2.34602 2.42630 2.70130 3.21095 3.22609 3.42351 3.45656 3.70605 4.32969 4.42437 4.56441 4.62404 4.66344 4.67180 4.70235 4.85544 4.88242 4.93077 5.09544 5.20971 5.24154 5.35384 5.42272 5.42872 5.48992 5.54971 5.67824 5.70289 5.81008 5.88151 6.00491 6.07236 6.08712 6.13045 6.20277 6.22889 6.30650 6.50392 6.53181 6.59862 6.64004 6.68146 6.86359 6.91284 7.16843 7.62797 7.79316 7.94502 8.18920 8.28919 8.78974 9.57992 10.01983 10.99317 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.019527 B = 0.002625 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.564145 B =10665.503385 C =11327.242723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.515 6.515 6 N -0.731 5.731 7 C 0.138 3.862 8 C -0.157 4.157 9 C 0.519 3.481 10 O -0.548 6.548 11 N -0.590 5.590 12 C 0.101 3.899 13 C 0.154 3.846 14 H 0.088 0.912 15 C -0.128 4.128 16 C -0.136 4.136 17 C -0.142 4.142 18 C 0.147 3.853 19 H 0.097 0.903 20 C 0.094 3.906 21 N -0.589 5.589 22 C -0.265 4.265 23 H 0.084 0.916 24 C 0.037 3.963 25 N -0.882 5.882 26 Si 0.854 3.146 27 H -0.282 1.282 28 H -0.304 1.304 29 H -0.273 1.273 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.400 0.600 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.068 0.932 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.052 0.948 44 H 0.084 0.916 45 H 0.038 0.962 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.074 0.926 49 H 0.076 0.924 50 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.620 -10.855 2.077 20.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.296 3.704 5 O -0.389 6.389 6 N -0.385 5.385 7 C 0.014 3.986 8 C -0.197 4.197 9 C 0.308 3.692 10 O -0.426 6.426 11 N -0.323 5.323 12 C -0.022 4.022 13 C 0.046 3.954 14 H 0.106 0.894 15 C -0.167 4.167 16 C -0.174 4.174 17 C -0.181 4.181 18 C 0.039 3.961 19 H 0.114 0.886 20 C -0.030 4.030 21 N -0.310 5.310 22 C -0.393 4.393 23 H 0.102 0.898 24 C -0.164 4.164 25 N -0.522 5.522 26 Si 0.683 3.317 27 H -0.209 1.209 28 H -0.231 1.231 29 H -0.199 1.199 30 H 0.110 0.890 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.234 0.766 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.086 0.914 41 H 0.104 0.896 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.069 0.931 47 H 0.081 0.919 48 H 0.092 0.908 49 H 0.094 0.906 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -16.781 -12.189 2.127 20.849 hybrid contribution -1.062 1.214 -1.209 2.015 sum -17.842 -10.975 0.918 20.968 Atomic orbital electron populations 1.22853 0.80262 1.03420 1.00162 1.88029 1.19864 1.25144 1.95425 1.22238 0.91582 0.87117 1.02721 1.20231 0.88643 0.84589 0.76934 1.90771 1.74558 1.26435 1.47111 1.45868 1.07319 1.08747 1.76600 1.21049 0.77510 0.95771 1.04246 1.21906 0.93855 0.98789 1.05195 1.19926 0.88744 0.84223 0.76357 1.90727 1.74801 1.26131 1.50967 1.48133 1.07392 1.05871 1.70916 1.22250 0.78485 1.01390 1.00089 1.21305 0.97287 0.85399 0.91377 0.89420 1.21968 0.95820 0.99333 0.99563 1.22049 0.96775 0.96826 1.01702 1.22251 0.98757 0.97067 1.00024 1.21392 0.85281 0.98230 0.91194 0.88560 1.22388 0.96381 0.82816 1.01444 1.44721 0.99727 1.01581 1.85019 1.18750 1.03325 0.84622 1.32571 0.89799 1.25258 0.97832 0.94981 0.98336 1.70043 1.46756 0.98209 1.37231 0.87453 0.80282 0.75933 0.87989 1.20903 1.23149 1.19926 0.89026 0.93740 0.93744 0.90130 0.90112 0.76558 0.90358 0.90341 0.88095 0.88137 0.91370 0.89562 0.92318 0.92950 0.89825 0.94277 0.93126 0.91937 0.90786 0.90620 0.92639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.76 10.24 -55.14 -0.56 -4.33 16 3 C 0.04 0.32 6.42 36.01 0.23 0.55 16 4 C 0.51 5.67 7.91 -10.99 -0.09 5.58 16 5 O -0.51 -8.50 16.50 -14.36 -0.24 -8.74 16 6 N -0.73 -6.21 5.56 -60.29 -0.33 -6.55 16 7 C 0.14 1.54 4.96 -4.04 -0.02 1.52 16 8 C -0.16 -1.57 4.12 -27.89 -0.11 -1.68 16 9 C 0.52 7.48 5.02 -10.99 -0.06 7.42 16 10 O -0.55 -9.66 15.38 5.55 0.09 -9.58 16 11 N -0.59 -8.94 1.66 -172.51 -0.29 -9.23 16 12 C 0.10 1.67 5.89 -3.49 -0.02 1.65 16 13 C 0.15 2.82 3.62 -66.85 -0.24 2.58 16 14 H 0.09 1.61 8.01 -51.93 -0.42 1.19 16 15 C -0.13 -2.24 5.58 -26.54 -0.15 -2.38 16 16 C -0.14 -2.25 5.55 -26.72 -0.15 -2.39 16 17 C -0.14 -2.48 4.89 -26.53 -0.13 -2.61 16 18 C 0.15 2.75 2.39 -67.07 -0.16 2.59 16 19 H 0.10 2.01 4.97 -51.93 -0.26 1.76 16 20 C 0.09 1.40 5.75 -3.71 -0.02 1.38 16 21 N -0.59 -12.49 2.25 -155.68 -0.35 -12.84 16 22 C -0.27 -6.78 10.00 -15.06 -0.15 -6.93 16 23 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 24 C 0.04 0.99 4.97 -17.43 -0.09 0.90 16 25 N -0.88 -25.12 13.97 55.49 0.78 -24.35 16 26 Si 0.85 20.40 23.60 -169.99 -4.01 16.38 16 27 H -0.28 -6.26 6.17 56.52 0.35 -5.91 16 28 H -0.30 -7.55 7.11 56.52 0.40 -7.15 16 29 H -0.27 -6.63 6.51 56.52 0.37 -6.26 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.38 8.14 -51.92 -0.42 -0.05 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 1.89 8.47 -40.82 -0.35 1.54 16 36 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 37 H 0.08 1.05 8.10 -51.93 -0.42 0.63 16 38 H 0.10 0.87 7.67 -51.93 -0.40 0.47 16 39 H 0.10 0.77 7.94 -51.93 -0.41 0.36 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.09 1.41 6.98 -51.93 -0.36 1.04 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 44 H 0.08 1.32 2.49 -52.44 -0.13 1.19 16 45 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 1.25 4.88 -51.93 -0.25 1.00 16 48 H 0.07 0.83 5.90 -51.93 -0.31 0.52 16 49 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 50 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 LS Contribution 376.46 15.07 5.67 5.67 Total: -1.00 -34.54 376.46 -7.31 -41.85 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.02 Total: 2.26 kcal Atomic # 6 Polarization: 9.48 SS G_CDS: -0.04 Total: 9.44 kcal Atomic # 7 Polarization: -52.77 SS G_CDS: -0.20 Total: -52.97 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: -0.72 Total: -22.65 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.01 Total: 16.38 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.54 -7.31 -41.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569459421.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.799 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds