Wall clock time and date at job start Sat Apr 11 2020 05:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 117.00018 * 2 1 4 4 O 1.20829 * 119.99738 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00240 * 180.02562 * 3 2 1 6 6 C 1.52996 * 112.84990 * 185.81819 * 5 3 2 7 7 O 1.42898 * 109.52107 * 177.67786 * 6 5 3 8 8 C 1.53120 * 109.52337 * 297.79869 * 6 5 3 9 9 C 1.53037 * 109.28100 * 177.55803 * 8 6 5 10 10 N 1.46841 * 109.52795 * 300.82761 * 9 8 6 11 11 C 1.46895 * 111.00182 * 185.83524 * 10 9 8 12 12 C 1.53008 * 109.46994 * 169.99700 * 11 10 9 13 13 H 1.09005 * 109.46843 * 55.00321 * 12 11 10 14 14 C 1.52997 * 109.47145 * 295.00207 * 12 11 10 15 15 C 1.53002 * 109.46708 * 175.00142 * 12 11 10 16 16 C 1.50706 * 109.46537 * 185.00320 * 15 12 11 17 17 H 1.07997 * 120.00322 * 359.97438 * 16 15 12 18 18 C 1.37883 * 119.99772 * 180.02562 * 16 15 12 19 19 N 1.31516 * 119.99604 * 359.97438 * 18 16 15 20 20 Si 1.86791 * 119.99877 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47087 * 90.00011 * 20 18 16 22 22 H 1.48501 * 109.47270 * 209.99765 * 20 18 16 23 23 H 1.48499 * 109.47334 * 329.99870 * 20 18 16 24 24 C 1.46850 * 111.19791 * 61.73503 * 10 9 8 25 25 C 1.53037 * 109.52463 * 298.26082 * 24 10 9 26 26 C 1.53780 * 113.61170 * 317.01406 * 5 3 2 27 27 C 1.53959 * 87.02055 * 89.23001 * 26 5 3 28 28 C 1.53782 * 87.11178 * 25.35977 * 27 26 5 29 29 H 1.09000 * 109.47327 * 59.99934 * 1 2 3 30 30 H 1.08999 * 109.46983 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46883 * 299.99610 * 1 2 3 32 32 H 0.96700 * 114.00049 * 180.12414 * 7 6 5 33 33 H 1.09006 * 109.50163 * 57.62493 * 8 6 5 34 34 H 1.09002 * 109.53905 * 297.52847 * 8 6 5 35 35 H 1.09000 * 109.46254 * 180.80367 * 9 8 6 36 36 H 1.09007 * 109.44804 * 60.83719 * 9 8 6 37 37 H 1.08997 * 109.47094 * 289.99421 * 11 10 9 38 38 H 1.08996 * 109.46936 * 50.00188 * 11 10 9 39 39 H 1.09001 * 109.47648 * 59.99907 * 14 12 11 40 40 H 1.08999 * 109.47025 * 180.02562 * 14 12 11 41 41 H 1.08996 * 109.47210 * 299.99990 * 14 12 11 42 42 H 1.08996 * 109.47008 * 304.99541 * 15 12 11 43 43 H 1.08989 * 109.47039 * 65.00532 * 15 12 11 44 44 H 0.97005 * 119.99385 * 180.02562 * 19 18 16 45 45 H 1.09002 * 109.46030 * 58.28159 * 24 10 9 46 46 H 1.09006 * 109.46292 * 178.24535 * 24 10 9 47 47 H 1.08996 * 109.50442 * 299.24002 * 25 24 10 48 48 H 1.09004 * 109.50138 * 179.11896 * 25 24 10 49 49 H 1.09004 * 113.60969 * 203.74687 * 26 5 3 50 50 H 1.08998 * 113.61609 * 334.64635 * 26 5 3 51 51 H 1.09006 * 113.53274 * 270.81080 * 27 26 5 52 52 H 1.08998 * 113.66807 * 139.93363 * 27 26 5 53 53 H 1.09000 * 113.61253 * 220.09586 * 28 27 26 54 54 H 1.08995 * 113.61075 * 89.18705 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0862 2.7067 0.1424 7 8 5.5144 2.6938 0.1878 8 6 3.6198 3.5423 -1.0530 9 6 4.0911 4.9872 -0.8741 10 7 3.5391 5.5328 0.3725 11 6 3.8567 6.9606 0.5084 12 6 3.0648 7.5501 1.6773 13 1 3.2650 6.9725 2.5798 14 6 1.5693 7.4966 1.3588 15 6 3.4876 9.0039 1.8979 16 6 2.7992 9.5466 3.1238 17 1 2.1271 8.9177 3.6887 18 6 3.0266 10.8465 3.5236 19 7 3.8447 11.6124 2.8353 20 14 2.1729 11.5194 5.0426 21 1 3.0172 11.2666 6.2379 22 1 1.9623 12.9810 4.8855 23 1 0.8604 10.8456 5.2122 24 6 4.0113 4.7753 1.5385 25 6 3.5375 3.3240 1.4317 26 6 4.2358 0.2777 0.9597 27 6 4.2368 -0.7240 -0.2095 28 6 4.2237 0.4927 -1.1499 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 5.9129 3.5701 0.2798 33 1 2.5316 3.5190 -1.1107 34 1 4.0418 3.1327 -1.9708 35 1 3.7484 5.5879 -1.7166 36 1 5.1800 5.0111 -0.8302 37 1 4.9238 7.0791 0.6960 38 1 3.5892 7.4813 -0.4110 39 1 1.2681 6.4609 1.2015 40 1 1.0052 7.9170 2.1913 41 1 1.3691 8.0741 0.4563 42 1 4.5676 9.0511 2.0370 43 1 3.2065 9.5997 1.0297 44 1 4.0050 12.5268 3.1168 45 1 5.1005 4.8004 1.5711 46 1 3.6105 5.2221 2.4485 47 1 2.4481 3.2973 1.4130 48 1 3.9014 2.7584 2.2896 49 1 5.2340 0.5798 1.2766 50 1 3.5989 -0.0218 1.7920 51 1 3.3316 -1.3288 -0.2653 52 1 5.1485 -1.3177 -0.2763 53 1 3.5770 0.3665 -2.0181 54 1 5.2186 0.8536 -1.4107 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646376521.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:21 Heat of formation + Delta-G solvation = -137.193056 kcal Electronic energy + Delta-G solvation = -32012.955528 eV Core-core repulsion = 27949.470043 eV Total energy + Delta-G solvation = -4063.485485 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.224 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.57237 -40.63673 -39.17397 -37.77641 -37.31656 -35.90168 -34.22847 -32.40533 -31.93708 -29.30214 -28.87168 -28.06571 -26.80896 -26.43080 -24.86441 -24.09924 -23.60361 -22.60062 -20.75075 -20.52738 -20.26659 -18.54955 -18.36384 -18.13373 -17.40418 -17.03821 -16.76371 -16.49480 -16.13645 -15.98637 -15.70158 -15.46063 -15.35762 -15.09135 -14.50473 -14.39527 -14.30573 -14.16318 -13.87185 -13.38257 -13.32144 -13.28797 -13.13621 -13.04135 -12.85346 -12.75245 -12.66424 -12.55175 -12.43414 -12.24890 -12.17888 -12.13588 -11.96091 -11.76888 -11.62765 -11.46393 -11.38620 -11.20257 -11.08026 -10.94291 -10.70710 -10.58371 -10.52361 -9.15763 -8.18251 -6.27035 1.07957 1.38701 1.39735 1.50880 1.58101 2.41025 2.93115 3.14951 3.15094 3.34879 3.47733 3.58800 3.78799 3.85196 3.94986 3.97883 4.14819 4.24487 4.29731 4.31924 4.34436 4.37202 4.42826 4.47894 4.51858 4.56004 4.71271 4.73874 4.81124 4.83581 4.86597 4.89592 4.93404 4.97402 4.99514 5.03203 5.07950 5.14655 5.16581 5.20803 5.23321 5.27007 5.45510 5.47202 5.47939 5.55028 5.61896 5.79746 5.88377 6.12527 6.25167 6.32466 6.61892 6.75432 6.88498 7.40970 8.93816 Molecular weight = 339.22amu Principal moments of inertia in cm(-1) A = 0.019381 B = 0.002525 C = 0.002401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1444.339554 B =11088.028504 C =11661.099230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.351 6.351 3 C 0.484 3.516 4 O -0.514 6.514 5 C -0.082 4.082 6 C 0.172 3.828 7 O -0.553 6.553 8 C -0.141 4.141 9 C 0.055 3.945 10 N -0.538 5.538 11 C 0.074 3.926 12 C -0.071 4.071 13 H 0.052 0.948 14 C -0.110 4.110 15 C 0.035 3.965 16 C -0.528 4.528 17 H 0.058 0.942 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.959 3.041 21 H -0.273 1.273 22 H -0.282 1.282 23 H -0.265 1.265 24 C 0.054 3.946 25 C -0.141 4.141 26 C -0.110 4.110 27 C -0.131 4.131 28 C -0.106 4.106 29 H 0.060 0.940 30 H 0.134 0.866 31 H 0.057 0.943 32 H 0.385 0.615 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.026 0.974 38 H 0.066 0.934 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.035 0.965 42 H -0.013 1.013 43 H -0.010 1.010 44 H 0.262 0.738 45 H 0.040 0.960 46 H 0.067 0.933 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.103 0.897 50 H 0.070 0.930 51 H 0.093 0.907 52 H 0.087 0.913 53 H 0.072 0.928 54 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.029 -29.697 -8.839 30.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.267 6.267 3 C 0.328 3.672 4 O -0.403 6.403 5 C -0.083 4.083 6 C 0.132 3.868 7 O -0.362 6.362 8 C -0.178 4.178 9 C -0.073 4.073 10 N -0.263 5.263 11 C -0.054 4.054 12 C -0.090 4.090 13 H 0.071 0.929 14 C -0.168 4.168 15 C -0.003 4.003 16 C -0.567 4.567 17 H 0.076 0.924 18 C -0.198 4.198 19 N -0.575 5.575 20 Si 0.784 3.216 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.190 1.190 24 C -0.073 4.073 25 C -0.179 4.179 26 C -0.147 4.147 27 C -0.169 4.169 28 C -0.143 4.143 29 H 0.079 0.921 30 H 0.152 0.848 31 H 0.076 0.924 32 H 0.235 0.765 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.044 0.956 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.006 0.994 43 H 0.008 0.992 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.094 0.906 48 H 0.094 0.906 49 H 0.122 0.878 50 H 0.089 0.911 51 H 0.111 0.889 52 H 0.105 0.895 53 H 0.090 0.910 54 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -0.749 -29.934 -8.938 31.249 hybrid contribution 0.250 2.073 0.893 2.271 sum -0.499 -27.861 -8.045 29.004 Atomic orbital electron populations 1.23551 0.74935 1.05689 1.02375 1.86484 1.24553 1.32036 1.83653 1.22995 0.90994 0.81473 0.71776 1.90688 1.67443 1.36735 1.45409 1.21510 0.86902 0.95547 1.04346 1.20379 0.80961 0.91600 0.93909 1.86344 1.17917 1.35453 1.96454 1.22314 1.03219 0.93952 0.98355 1.22099 0.97092 0.95809 0.92283 1.61833 1.60173 1.01829 1.02431 1.22017 0.96758 0.87744 0.98849 1.21024 0.95794 0.95769 0.96375 0.92919 1.21438 0.95450 1.00207 0.99657 1.18995 0.94418 0.91790 0.95099 1.21620 1.26352 0.97363 1.11319 0.92410 1.25928 0.96112 0.97576 1.00232 1.70099 1.37892 1.08227 1.41314 0.85529 0.79174 0.77404 0.79461 1.19809 1.20803 1.18958 1.22078 0.97411 0.93788 0.94070 1.22305 1.02732 0.94702 0.98160 1.22897 1.01399 0.93948 0.96484 1.22928 1.03670 0.96056 0.94195 1.22861 1.01468 0.95090 0.94928 0.92089 0.84826 0.92386 0.76470 0.90265 0.89924 0.90626 0.93985 0.95625 0.91502 0.92343 0.94564 0.94561 0.99421 0.99156 0.92920 0.94242 0.91485 0.90570 0.90586 0.87837 0.91150 0.88874 0.89477 0.90971 0.87593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.35 -6.02 8.67 -51.42 -0.45 -6.47 16 3 C 0.48 10.32 6.57 71.24 0.47 10.79 16 4 O -0.51 -14.13 11.80 21.95 0.26 -13.87 16 5 C -0.08 -1.49 0.46 -52.40 -0.02 -1.51 16 6 C 0.17 3.55 0.35 -10.72 0.00 3.55 16 7 O -0.55 -10.23 11.01 -148.98 -1.64 -11.87 16 8 C -0.14 -3.14 4.76 30.65 0.15 -2.99 16 9 C 0.05 1.33 5.23 86.33 0.45 1.78 16 10 N -0.54 -16.07 4.11 -896.35 -3.68 -19.75 16 11 C 0.07 2.62 4.35 86.31 0.38 3.00 16 12 C -0.07 -3.02 2.26 -10.79 -0.02 -3.04 16 13 H 0.05 2.27 6.22 -2.38 -0.01 2.26 16 14 C -0.11 -4.54 8.89 71.98 0.64 -3.90 16 15 C 0.03 1.85 4.45 29.85 0.13 1.99 16 16 C -0.53 -30.55 8.41 25.60 0.22 -30.33 16 17 H 0.06 3.25 7.06 -2.91 -0.02 3.23 16 18 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 19 N -0.93 -57.79 13.29 21.45 0.28 -57.51 16 20 Si 0.96 45.29 29.54 68.60 2.03 47.31 16 21 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 22 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 24 C 0.05 1.50 5.07 86.33 0.44 1.94 16 25 C -0.14 -3.46 4.76 30.65 0.15 -3.32 16 26 C -0.11 -1.67 6.73 31.18 0.21 -1.46 16 27 C -0.13 -1.59 7.64 31.18 0.24 -1.35 16 28 C -0.11 -1.52 6.60 31.12 0.21 -1.31 16 29 H 0.06 0.82 8.13 -2.39 -0.02 0.80 16 30 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.82 8.13 -2.38 -0.02 0.81 16 32 H 0.38 6.40 5.87 -74.06 -0.43 5.97 16 33 H 0.08 2.17 5.76 -2.38 -0.01 2.15 16 34 H 0.08 1.58 7.82 -2.39 -0.02 1.56 16 35 H 0.08 1.86 8.02 -2.39 -0.02 1.84 16 36 H 0.04 0.90 6.85 -2.38 -0.02 0.88 16 37 H 0.03 0.91 8.12 -2.39 -0.02 0.89 16 38 H 0.07 2.39 7.99 -2.39 -0.02 2.37 16 39 H 0.06 2.22 7.75 -2.39 -0.02 2.20 16 40 H 0.04 1.58 6.95 -2.39 -0.02 1.56 16 41 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 42 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 43 H -0.01 -0.58 8.14 -2.39 -0.02 -0.60 16 44 H 0.26 15.24 8.31 -92.70 -0.77 14.46 16 45 H 0.04 0.99 6.85 -2.39 -0.02 0.97 16 46 H 0.07 2.13 6.12 -2.38 -0.01 2.11 16 47 H 0.08 2.24 5.77 -2.39 -0.01 2.23 16 48 H 0.08 1.71 7.98 -2.39 -0.02 1.69 16 49 H 0.10 1.61 7.27 -2.38 -0.02 1.60 16 50 H 0.07 1.07 8.09 -2.39 -0.02 1.05 16 51 H 0.09 1.10 6.86 -2.38 -0.02 1.09 16 52 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 53 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 54 H 0.11 1.51 7.44 -2.39 -0.02 1.49 16 Total: -1.00 -68.44 400.44 2.52 -65.92 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.45 Total: 20.47 kcal Atomic # 6 Polarization: -29.50 SS G_CDS: 5.27 Total: -24.23 kcal Atomic # 7 Polarization: -73.86 SS G_CDS: -3.40 Total: -77.26 kcal Atomic # 8 Polarization: -30.38 SS G_CDS: -1.83 Total: -32.21 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -68.44 2.52 -65.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646376521.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.276 kcal (2) G-P(sol) polarization free energy of solvation -68.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds