Wall clock time and date at job start Sat Apr 11 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00206 * 2 1 4 4 H 1.09002 * 109.47475 * 329.84137 * 3 2 1 5 5 C 1.50700 * 109.46702 * 89.83950 * 3 2 1 6 6 O 1.21280 * 120.00477 * 4.99903 * 5 3 2 7 7 N 1.34784 * 119.99874 * 185.00077 * 5 3 2 8 8 C 1.46495 * 120.00203 * 180.02562 * 7 5 3 9 9 C 1.52995 * 109.47242 * 180.02562 * 8 7 5 10 10 H 1.09000 * 112.91011 * 316.24696 * 9 8 7 11 11 C 1.53783 * 113.61810 * 87.50242 * 9 8 7 12 12 C 1.53781 * 87.08149 * 139.97999 * 11 9 8 13 13 H 1.09000 * 113.68657 * 89.13007 * 12 11 9 14 14 N 1.46900 * 113.61228 * 220.01830 * 12 11 9 15 15 C 1.46904 * 111.00039 * 252.50048 * 14 12 11 16 16 C 1.50698 * 109.47088 * 180.02562 * 15 14 12 17 17 O 1.21299 * 120.00030 * 359.97438 * 16 15 14 18 18 N 1.34775 * 120.00283 * 180.02562 * 16 15 14 19 19 C 1.37092 * 120.00558 * 180.27500 * 18 16 15 20 20 H 1.08007 * 119.99658 * 359.71823 * 19 18 16 21 21 C 1.38947 * 120.00504 * 179.72574 * 19 18 16 22 22 N 1.31408 * 120.00598 * 180.02562 * 21 19 18 23 23 Si 1.86808 * 119.99799 * 359.97438 * 21 19 18 24 24 H 1.48505 * 109.46686 * 90.00306 * 23 21 19 25 25 H 1.48495 * 109.47217 * 210.00083 * 23 21 19 26 26 H 1.48502 * 109.46793 * 330.00649 * 23 21 19 27 27 C 1.53780 * 113.61406 * 185.00046 * 9 8 7 28 28 C 1.52999 * 109.47424 * 209.83682 * 3 2 1 29 29 C 1.52996 * 117.49885 * 132.10859 * 28 3 2 30 30 C 1.52996 * 60.00161 * 252.51464 * 29 28 3 31 31 H 1.09008 * 109.46800 * 304.68893 * 1 2 3 32 32 H 1.09002 * 109.47628 * 64.68540 * 1 2 3 33 33 H 1.09002 * 109.47654 * 184.68978 * 1 2 3 34 34 H 0.97005 * 120.00001 * 359.97438 * 7 5 3 35 35 H 1.09006 * 109.47523 * 59.99411 * 8 7 5 36 36 H 1.08997 * 109.47096 * 300.00021 * 8 7 5 37 37 H 1.09000 * 113.60946 * 25.42567 * 11 9 8 38 38 H 1.08997 * 113.61047 * 254.53561 * 11 9 8 39 39 H 1.00901 * 111.00230 * 16.45210 * 14 12 11 40 40 H 1.08997 * 109.46909 * 59.99851 * 15 14 12 41 41 H 1.09000 * 109.46794 * 299.99752 * 15 14 12 42 42 H 0.97007 * 119.99728 * 359.97438 * 18 16 15 43 43 H 0.96993 * 120.00603 * 179.97438 * 22 21 19 44 44 H 1.09004 * 113.61721 * 105.46860 * 27 9 8 45 45 H 1.09007 * 113.69329 * 334.57333 * 27 9 8 46 46 H 1.09000 * 115.55136 * 277.82502 * 28 3 2 47 47 H 1.09002 * 117.50281 * 0.02562 * 29 28 3 48 48 H 1.09003 * 117.49731 * 145.02166 * 29 28 3 49 49 H 1.09002 * 117.50000 * 252.50598 * 30 29 28 50 50 H 1.08999 * 117.49550 * 107.49007 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3463 1.9988 -0.5163 5 6 2.2109 1.7658 1.4208 6 8 1.9731 1.0131 2.3416 7 7 2.6546 3.0142 1.6684 8 6 2.8503 3.4617 3.0496 9 6 3.3549 4.9060 3.0511 10 1 4.1319 5.0848 2.3079 11 6 2.2281 5.9523 3.0282 12 6 3.0698 6.7655 4.0258 13 1 3.7691 7.4532 3.5502 14 7 2.2749 7.4018 5.0847 15 6 2.1910 8.8540 4.8793 16 6 1.3706 9.4708 5.9827 17 8 0.9014 8.7695 6.8542 18 7 1.1572 10.8014 6.0007 19 6 0.4155 11.3633 7.0075 20 1 -0.0016 10.7389 7.7839 21 6 0.2003 12.7358 7.0292 22 7 -0.5102 13.2744 7.9946 23 14 0.9222 13.8157 5.6867 24 1 -0.0489 13.9316 4.5691 25 1 1.2072 15.1652 6.2367 26 1 2.1819 13.2085 5.1869 27 6 3.7091 5.4333 4.4516 28 6 3.3608 1.2624 -0.7177 29 6 3.6353 2.3371 -1.7714 30 6 3.3600 0.8953 -2.2030 31 1 -0.3633 0.5849 0.8451 32 1 -0.3634 0.4394 -0.9290 33 1 -0.3634 -1.0242 0.0840 34 1 2.8452 3.6162 0.9320 35 1 3.5828 2.8199 3.5392 36 1 1.9033 3.4075 3.5866 37 1 1.2876 5.5903 3.4435 38 1 2.1050 6.4401 2.0612 39 1 1.3551 6.9912 5.1427 40 1 1.7198 9.0584 3.9179 41 1 3.1938 9.2811 4.8906 42 1 1.5320 11.3622 5.3035 43 1 -0.6601 14.2326 8.0099 44 1 4.7815 5.5022 4.6339 45 1 3.1742 4.9302 5.2573 46 1 4.2026 0.9209 -0.1153 47 1 2.8540 3.0751 -1.9532 48 1 4.6580 2.7031 -1.8624 49 1 4.2016 0.3127 -2.5779 50 1 2.3974 0.6845 -2.6688 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656128895.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:47 Heat of formation + Delta-G solvation = -93.428967 kcal Electronic energy + Delta-G solvation = -28559.570275 eV Core-core repulsion = 24394.442200 eV Total energy + Delta-G solvation = -4165.128075 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34401 -40.56146 -39.90119 -38.74154 -37.37311 -36.22844 -35.79750 -34.44028 -33.72102 -30.62635 -29.01365 -27.86010 -26.71934 -26.51933 -25.48833 -23.21188 -22.74466 -22.31181 -21.52572 -21.33039 -20.67001 -20.04534 -18.70136 -18.02989 -17.66319 -17.01343 -16.97025 -16.81284 -16.49675 -16.47572 -15.92468 -15.77515 -15.53971 -15.37006 -15.26152 -14.88946 -14.53625 -14.48616 -14.10061 -14.08706 -13.88671 -13.59004 -13.32289 -13.02320 -12.85746 -12.66817 -12.63536 -12.41520 -12.38417 -12.19671 -11.99345 -11.94309 -11.77243 -11.51536 -11.44843 -11.38627 -11.27528 -11.14643 -10.42615 -10.31624 -10.25097 -10.12456 -9.19267 -8.41173 -6.02616 1.30709 1.36381 1.45788 1.48078 1.96345 2.00350 2.23756 2.45426 2.77208 3.15338 3.21752 3.41605 3.52105 3.61486 3.66243 3.79837 3.83939 3.96079 4.04042 4.07046 4.19432 4.19636 4.29846 4.33541 4.44364 4.47473 4.49522 4.55322 4.59010 4.72280 4.78353 4.83985 4.86562 4.90448 4.94849 5.03866 5.14968 5.16731 5.23903 5.28926 5.36531 5.49122 5.55494 5.93001 5.95681 6.19583 6.41820 6.52748 6.60363 6.88278 7.19355 7.39971 7.97336 8.76610 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020462 B = 0.001610 C = 0.001586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1368.030938 B =17389.932213 C =17645.609832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.381 6.381 3 C 0.108 3.892 4 H 0.112 0.888 5 C 0.486 3.514 6 O -0.581 6.581 7 N -0.705 5.705 8 C 0.132 3.868 9 C -0.100 4.100 10 H 0.126 0.874 11 C -0.158 4.158 12 C 0.064 3.936 13 H 0.119 0.881 14 N -0.681 5.681 15 C 0.064 3.936 16 C 0.445 3.555 17 O -0.618 6.618 18 N -0.590 5.590 19 C -0.331 4.331 20 H 0.052 0.948 21 C -0.017 4.017 22 N -0.935 5.935 23 Si 0.968 3.032 24 H -0.256 1.256 25 H -0.276 1.276 26 H -0.229 1.229 27 C -0.123 4.123 28 C -0.174 4.174 29 C -0.148 4.148 30 C -0.163 4.163 31 H 0.031 0.969 32 H 0.068 0.932 33 H 0.096 0.904 34 H 0.418 0.582 35 H 0.057 0.943 36 H 0.048 0.952 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.343 0.657 40 H 0.080 0.920 41 H 0.115 0.885 42 H 0.391 0.609 43 H 0.279 0.721 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.099 0.901 47 H 0.116 0.884 48 H 0.115 0.885 49 H 0.102 0.898 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.953 -19.156 -30.067 37.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.299 6.299 3 C 0.047 3.953 4 H 0.129 0.871 5 C 0.272 3.728 6 O -0.460 6.460 7 N -0.359 5.359 8 C 0.008 3.992 9 C -0.119 4.119 10 H 0.144 0.856 11 C -0.197 4.197 12 C -0.045 4.045 13 H 0.137 0.863 14 N -0.312 5.312 15 C -0.069 4.069 16 C 0.233 3.767 17 O -0.503 6.503 18 N -0.232 5.232 19 C -0.461 4.461 20 H 0.070 0.930 21 C -0.215 4.215 22 N -0.576 5.576 23 Si 0.787 3.213 24 H -0.180 1.180 25 H -0.201 1.201 26 H -0.152 1.152 27 C -0.162 4.162 28 C -0.193 4.193 29 C -0.185 4.185 30 C -0.200 4.200 31 H 0.049 0.951 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.255 0.745 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.088 0.912 38 H 0.107 0.893 39 H 0.163 0.837 40 H 0.098 0.902 41 H 0.133 0.867 42 H 0.226 0.774 43 H 0.089 0.911 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.117 0.883 47 H 0.134 0.866 48 H 0.134 0.866 49 H 0.121 0.879 50 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.996 -20.103 -28.271 36.705 hybrid contribution -1.017 1.067 -0.346 1.514 sum 10.979 -19.036 -28.617 36.081 Atomic orbital electron populations 1.23006 0.79528 1.03991 1.00609 1.87978 1.21292 1.26252 1.94336 1.21659 0.96298 0.86733 0.90584 0.87051 1.21867 0.76375 0.81921 0.92615 1.90711 1.52119 1.55409 1.47783 1.45871 1.66689 1.13814 1.09485 1.21290 1.00057 0.95143 0.82678 1.22547 0.99088 0.91064 0.99178 0.85562 1.23755 0.97320 0.97601 1.01029 1.23207 0.96397 0.94867 0.90078 0.86289 1.60017 1.21459 1.01943 1.47821 1.21682 1.00676 0.89775 0.94731 1.21152 0.84414 0.82030 0.89105 1.90550 1.55321 1.62072 1.42345 1.42027 1.48629 1.07248 1.25274 1.19009 1.29418 0.92493 1.05147 0.92969 1.26168 0.97024 0.97798 1.00522 1.69809 1.40138 1.13212 1.34433 0.85329 0.80174 0.77891 0.77871 1.18006 1.20111 1.15222 1.23066 1.01523 0.95590 0.96000 1.22006 0.95267 1.09211 0.92805 1.23254 1.04776 0.91850 0.98577 1.22953 1.04041 0.98978 0.94018 0.95059 0.91331 0.88529 0.74504 0.92447 0.93354 0.91246 0.89257 0.83736 0.90202 0.86736 0.77369 0.91142 0.90096 0.91363 0.88257 0.86563 0.86624 0.87920 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.79 113.37 1.22 1.57 16 2 O -0.38 -7.35 9.85 -129.99 -1.28 -8.63 16 3 C 0.11 1.51 2.69 29.85 0.08 1.59 16 4 H 0.11 0.90 7.61 -2.39 -0.02 0.88 16 5 C 0.49 9.62 7.11 87.66 0.62 10.24 16 6 O -0.58 -17.89 16.51 15.96 0.26 -17.63 16 7 N -0.70 -9.32 5.52 -463.07 -2.55 -11.87 16 8 C 0.13 2.15 5.51 86.38 0.48 2.62 16 9 C -0.10 -1.14 3.75 -10.27 -0.04 -1.18 16 10 H 0.13 0.78 8.14 -2.39 -0.02 0.76 16 11 C -0.16 -2.16 7.25 31.12 0.23 -1.94 16 12 C 0.06 1.13 4.18 45.44 0.19 1.32 16 13 H 0.12 1.60 7.87 -2.39 -0.02 1.58 16 14 N -0.68 -19.12 6.24 -492.85 -3.08 -22.20 16 15 C 0.06 1.83 6.01 85.56 0.51 2.35 16 16 C 0.44 19.96 7.82 87.66 0.69 20.65 16 17 O -0.62 -34.70 15.78 -3.09 -0.05 -34.75 16 18 N -0.59 -27.58 5.09 -306.98 -1.56 -29.14 16 19 C -0.33 -19.50 10.16 84.04 0.85 -18.65 16 20 H 0.05 3.68 7.39 -2.91 -0.02 3.66 16 21 C -0.02 -0.92 5.50 84.93 0.47 -0.46 16 22 N -0.94 -56.51 13.96 21.66 0.30 -56.21 16 23 Si 0.97 38.14 27.74 68.60 1.90 40.04 16 24 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 25 H -0.28 -10.85 7.11 99.48 0.71 -10.15 16 26 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 27 C -0.12 -2.06 7.44 31.12 0.23 -1.83 16 28 C -0.17 -1.77 5.31 -10.80 -0.06 -1.83 16 29 C -0.15 -0.53 10.18 30.59 0.31 -0.21 16 30 C -0.16 -1.16 10.21 30.59 0.31 -0.85 16 31 H 0.03 0.52 8.12 -2.38 -0.02 0.50 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.42 2.51 8.47 -92.70 -0.79 1.72 16 35 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.05 1.02 7.84 -2.39 -0.02 1.00 16 37 H 0.07 1.23 7.58 -2.39 -0.02 1.21 16 38 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.34 10.68 7.90 -89.69 -0.71 9.97 16 40 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.11 2.74 8.13 -2.39 -0.02 2.72 16 42 H 0.39 14.84 5.76 -92.70 -0.53 14.31 16 43 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 44 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.07 1.47 8.10 -2.38 -0.02 1.46 16 46 H 0.10 1.29 8.13 -2.39 -0.02 1.28 16 47 H 0.12 0.04 8.07 -2.39 -0.02 0.02 16 48 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 49 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 50 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -87.91 416.02 -1.08 -88.99 By element: Atomic # 1 Polarization: 39.13 SS G_CDS: -1.12 Total: 38.01 kcal Atomic # 6 Polarization: 7.30 SS G_CDS: 6.10 Total: 13.40 kcal Atomic # 7 Polarization: -112.53 SS G_CDS: -6.89 Total: -119.43 kcal Atomic # 8 Polarization: -59.95 SS G_CDS: -1.07 Total: -61.01 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 1.90 Total: 40.04 kcal Total: -87.91 -1.08 -88.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656128895.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.441 kcal (2) G-P(sol) polarization free energy of solvation -87.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds