Wall clock time and date at job start Sat Apr 11 2020 05:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42899 * 113.99949 * 2 1 4 4 H 1.09006 * 109.47060 * 30.00609 * 3 2 1 5 5 C 1.50695 * 109.47464 * 270.00145 * 3 2 1 6 6 O 1.21280 * 120.00239 * 355.00642 * 5 3 2 7 7 N 1.34780 * 119.99851 * 175.00064 * 5 3 2 8 8 C 1.47317 * 125.61861 * 359.77499 * 7 5 3 9 9 C 1.54323 * 107.12157 * 178.89316 * 8 7 5 10 10 C 1.55153 * 103.10236 * 338.02434 * 9 8 7 11 11 H 1.09003 * 111.00424 * 277.34027 * 10 9 8 12 12 C 1.52995 * 111.00679 * 153.52709 * 10 9 8 13 13 N 1.46900 * 109.47539 * 66.45174 * 12 10 9 14 14 C 1.46896 * 111.00549 * 180.02562 * 13 12 10 15 15 C 1.50696 * 109.47258 * 180.02562 * 14 13 12 16 16 O 1.21289 * 120.00185 * 359.97438 * 15 14 13 17 17 N 1.34776 * 119.99936 * 179.97438 * 15 14 13 18 18 C 1.37099 * 119.99789 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00277 * 359.97438 * 18 17 15 20 20 C 1.38955 * 119.99800 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00054 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46948 * 60.00044 * 22 20 18 24 24 H 1.48500 * 109.47326 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47228 * 300.00299 * 22 20 18 26 26 C 1.47427 * 125.64626 * 180.02562 * 7 5 3 27 27 C 1.52996 * 109.47005 * 150.00076 * 3 2 1 28 28 C 1.53008 * 117.49942 * 8.62441 * 27 3 2 29 29 C 1.53000 * 60.00000 * 252.51063 * 28 27 3 30 30 H 1.09007 * 109.47290 * 59.99529 * 1 2 3 31 31 H 1.08997 * 109.47425 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47158 * 299.99670 * 1 2 3 33 33 H 1.09000 * 109.84974 * 59.58315 * 8 7 5 34 34 H 1.09003 * 110.06268 * 298.32593 * 8 7 5 35 35 H 1.09002 * 110.72057 * 219.57186 * 9 8 7 36 36 H 1.09003 * 110.71837 * 96.47759 * 9 8 7 37 37 H 1.09004 * 109.47518 * 186.45572 * 12 10 9 38 38 H 1.09004 * 109.46753 * 306.45127 * 12 10 9 39 39 H 1.00904 * 110.99862 * 303.95927 * 13 12 10 40 40 H 1.09008 * 109.46733 * 300.00199 * 14 13 12 41 41 H 1.09006 * 109.46937 * 59.99717 * 14 13 12 42 42 H 0.97003 * 120.00207 * 0.02562 * 17 15 14 43 43 H 0.96996 * 120.00144 * 179.97438 * 21 20 18 44 44 H 1.08996 * 110.37285 * 85.24728 * 26 7 5 45 45 H 1.09002 * 110.36636 * 322.92481 * 26 7 5 46 46 H 1.08999 * 115.55221 * 154.33278 * 27 3 2 47 47 H 1.08998 * 117.49449 * 359.97438 * 28 27 3 48 48 H 1.08997 * 117.49933 * 145.01924 * 28 27 3 49 49 H 1.09007 * 117.49472 * 252.50872 * 29 28 27 50 50 H 1.08999 * 117.49885 * 107.48870 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3450 1.9994 0.5140 5 6 2.2145 1.7644 -1.4207 6 8 1.9791 1.0108 -2.3413 7 7 2.6589 3.0126 -1.6684 8 6 2.9777 4.0277 -0.6495 9 6 3.4723 5.2832 -1.3983 10 6 3.9368 4.7168 -2.7660 11 1 4.9467 4.3123 -2.6988 12 6 3.8479 5.7829 -3.8598 13 7 4.8201 6.8493 -3.5844 14 6 4.7627 7.8934 -4.6162 15 6 5.7720 8.9671 -4.3009 16 8 6.4701 8.8722 -3.3136 17 7 5.8989 10.0329 -5.1161 18 6 6.8168 11.0100 -4.8289 19 1 7.4378 10.9259 -3.9494 20 6 6.9473 12.1090 -5.6691 21 7 6.1906 12.2121 -6.7385 22 14 8.1974 13.4407 -5.2775 23 1 9.5588 12.8483 -5.2477 24 1 8.1400 14.4958 -6.3210 25 1 7.8876 14.0364 -3.9530 26 6 2.9012 3.5892 -3.0034 27 6 3.3589 1.2632 0.7212 28 6 3.9139 -0.1110 1.1016 29 6 3.3635 0.8185 2.1852 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.7621 3.6564 0.0100 34 1 2.0865 4.2686 -0.0700 35 1 4.3059 5.7446 -0.8688 36 1 2.6598 5.9973 -1.5324 37 1 4.0687 5.3308 -4.8268 38 1 2.8424 6.2034 -3.8765 39 1 4.6766 7.2410 -2.6657 40 1 4.9896 7.4561 -5.5886 41 1 3.7635 8.3284 -4.6377 42 1 5.3404 10.1090 -5.9055 43 1 6.2815 12.9795 -7.3248 44 1 1.9784 4.0011 -3.4119 45 1 3.3101 2.8338 -3.6744 46 1 4.0740 2.0311 0.4263 47 1 3.3180 -0.9848 0.8384 48 1 4.9944 -0.2474 1.0568 49 1 4.0821 1.2936 2.8532 50 1 2.4058 0.5560 2.6345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662625696.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:00 Heat of formation + Delta-G solvation = -106.705394 kcal Electronic energy + Delta-G solvation = -29123.496551 eV Core-core repulsion = 24957.792766 eV Total energy + Delta-G solvation = -4165.703784 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.55486 -40.18731 -39.58845 -38.43740 -37.12473 -36.56069 -35.79446 -33.33905 -33.00174 -30.57624 -30.09395 -28.49087 -27.25731 -26.29831 -24.56190 -24.13566 -23.21206 -22.00830 -21.36714 -20.98138 -20.60267 -19.88877 -18.43220 -18.14090 -17.75543 -17.21198 -17.08994 -16.72484 -16.48250 -16.43246 -16.03945 -15.69120 -15.40137 -15.22398 -14.93771 -14.81277 -14.71047 -14.39462 -14.05307 -13.77151 -13.75588 -13.46929 -13.38160 -13.30711 -12.97398 -12.71626 -12.58501 -12.42554 -12.39127 -12.27987 -12.13660 -12.06329 -11.83923 -11.67342 -11.62899 -11.48498 -11.34307 -11.11202 -10.34640 -10.30442 -10.00465 -9.73892 -9.30726 -8.45443 -5.94224 1.40926 1.41547 1.43016 1.53767 1.77522 2.06866 2.30144 2.62793 2.89985 2.90324 3.22005 3.30696 3.51019 3.56969 3.68046 3.76222 3.86329 3.99810 4.06647 4.20726 4.25330 4.32082 4.34366 4.37616 4.39300 4.46892 4.48621 4.50340 4.57415 4.61336 4.73495 4.76915 4.78531 4.84422 4.89464 4.93882 5.01851 5.12989 5.20531 5.22290 5.33678 5.35759 5.41930 5.89076 5.95445 6.10811 6.40092 6.45856 6.61263 7.02528 7.13650 7.57763 8.12731 8.71604 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.029053 B = 0.001644 C = 0.001587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.536645 B =17025.274905 C =17635.698737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.377 6.377 3 C 0.114 3.886 4 H 0.114 0.886 5 C 0.503 3.497 6 O -0.578 6.578 7 N -0.614 5.614 8 C 0.095 3.905 9 C -0.128 4.128 10 C -0.088 4.088 11 H 0.083 0.917 12 C 0.074 3.926 13 N -0.681 5.681 14 C 0.064 3.936 15 C 0.438 3.562 16 O -0.622 6.622 17 N -0.574 5.574 18 C -0.335 4.335 19 H 0.080 0.920 20 C -0.013 4.013 21 N -0.920 5.920 22 Si 0.993 3.007 23 H -0.273 1.273 24 H -0.272 1.272 25 H -0.271 1.271 26 C 0.112 3.888 27 C -0.175 4.175 28 C -0.175 4.175 29 C -0.144 4.144 30 H 0.031 0.969 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.085 0.915 37 H 0.077 0.923 38 H 0.047 0.953 39 H 0.347 0.653 40 H 0.102 0.898 41 H 0.068 0.932 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.076 0.924 45 H 0.063 0.937 46 H 0.128 0.872 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.115 0.885 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.422 -20.120 15.610 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.294 6.294 3 C 0.053 3.947 4 H 0.131 0.869 5 C 0.292 3.708 6 O -0.457 6.457 7 N -0.349 5.349 8 C -0.027 4.027 9 C -0.166 4.166 10 C -0.107 4.107 11 H 0.102 0.898 12 C -0.055 4.055 13 N -0.314 5.314 14 C -0.068 4.068 15 C 0.225 3.775 16 O -0.509 6.509 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.098 0.902 20 C -0.213 4.213 21 N -0.561 5.561 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.011 4.011 27 C -0.194 4.194 28 C -0.212 4.212 29 C -0.181 4.181 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.167 0.833 40 H 0.120 0.880 41 H 0.086 0.914 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.094 0.906 45 H 0.081 0.919 46 H 0.145 0.855 47 H 0.110 0.890 48 H 0.117 0.883 49 H 0.133 0.867 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.517 -21.030 15.359 28.893 hybrid contribution -0.614 1.364 -0.697 1.650 sum -13.131 -19.666 14.662 27.823 Atomic orbital electron populations 1.23026 0.79373 1.04262 1.00528 1.87962 1.21474 1.25695 1.94260 1.21451 0.96594 0.86718 0.89981 0.86886 1.21561 0.76352 0.80052 0.92829 1.90689 1.52779 1.54399 1.47835 1.48696 1.64851 1.12287 1.09034 1.22487 1.01970 0.87299 0.90898 1.22748 1.02220 0.96639 0.95005 1.22207 0.98977 0.94256 0.95310 0.89820 1.21875 0.93534 0.91302 0.98826 1.60012 1.53681 1.12303 1.05416 1.21530 0.96600 0.91150 0.97534 1.20886 0.87556 0.84297 0.84753 1.90484 1.49934 1.79628 1.30825 1.41940 1.35297 1.19135 1.24728 1.19644 1.16231 1.00424 1.10133 0.90209 1.26042 0.99892 1.00316 0.95056 1.69664 1.40312 1.31947 1.14199 0.84987 0.78015 0.77210 0.78118 1.19822 1.19606 1.19568 1.22193 0.98789 0.95181 0.84926 1.22396 0.96184 1.01339 0.99435 1.22903 1.01008 0.93654 1.03619 1.23037 1.03681 1.01805 0.89560 0.95069 0.88144 0.91355 0.89377 0.88889 0.88944 0.89675 0.90460 0.93464 0.83339 0.88022 0.91375 0.76989 0.91333 0.90606 0.91856 0.85478 0.88989 0.88280 0.86652 0.87964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 10.81 113.37 1.23 1.55 16 2 O -0.38 -7.29 8.24 -129.99 -1.07 -8.36 16 3 C 0.11 1.85 2.32 29.85 0.07 1.92 16 4 H 0.11 1.21 7.78 -2.38 -0.02 1.19 16 5 C 0.50 11.41 7.18 87.66 0.63 12.04 16 6 O -0.58 -18.58 16.76 15.96 0.27 -18.31 16 7 N -0.61 -11.15 3.32 -811.00 -2.69 -13.85 16 8 C 0.09 1.10 6.14 86.67 0.53 1.63 16 9 C -0.13 -1.75 5.61 31.78 0.18 -1.58 16 10 C -0.09 -1.56 3.30 -9.40 -0.03 -1.60 16 11 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 12 C 0.07 1.50 5.19 86.30 0.45 1.95 16 13 N -0.68 -19.52 6.13 -517.93 -3.17 -22.69 16 14 C 0.06 2.08 6.17 85.56 0.53 2.61 16 15 C 0.44 20.25 7.82 87.66 0.69 20.94 16 16 O -0.62 -33.54 15.78 -3.06 -0.05 -33.59 16 17 N -0.57 -28.96 5.29 -306.99 -1.62 -30.59 16 18 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 19 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.24 16 21 N -0.92 -49.23 13.05 21.66 0.28 -48.95 16 22 Si 0.99 42.44 29.55 68.60 2.03 44.47 16 23 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 25 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 26 C 0.11 2.12 6.38 86.86 0.55 2.68 16 27 C -0.18 -2.38 5.20 -10.79 -0.06 -2.43 16 28 C -0.17 -2.55 9.87 30.60 0.30 -2.25 16 29 C -0.14 -1.41 10.19 30.60 0.31 -1.10 16 30 H 0.03 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.07 0.56 8.08 -2.39 -0.02 0.54 16 33 H 0.09 0.84 5.74 -2.39 -0.01 0.83 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 1.31 8.12 -2.39 -0.02 1.29 16 36 H 0.08 1.06 8.01 -2.39 -0.02 1.04 16 37 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 38 H 0.05 0.83 8.11 -2.39 -0.02 0.81 16 39 H 0.35 10.10 7.65 -89.69 -0.69 9.41 16 40 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 41 H 0.07 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.40 18.99 7.90 -92.71 -0.73 18.26 16 43 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 44 H 0.08 1.34 8.04 -2.39 -0.02 1.32 16 45 H 0.06 1.42 8.04 -2.39 -0.02 1.40 16 46 H 0.13 1.58 5.66 -2.39 -0.01 1.57 16 47 H 0.09 1.64 7.06 -2.39 -0.02 1.63 16 48 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 50 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -75.12 407.87 0.16 -74.95 By element: Atomic # 1 Polarization: 39.24 SS G_CDS: -0.46 Total: 38.77 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 6.66 Total: 18.15 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -7.21 Total: -116.08 kcal Atomic # 8 Polarization: -59.41 SS G_CDS: -0.85 Total: -60.27 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -75.12 0.16 -74.95 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662625696.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.754 kcal (2) G-P(sol) polarization free energy of solvation -75.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds