Wall clock time and date at job start Sat Apr 11 2020 05:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34221 * 116.99849 * 2 1 4 4 O 1.20829 * 120.00033 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00271 * 179.97438 * 3 2 1 6 6 H 1.09008 * 115.54709 * 34.33399 * 5 3 2 7 7 C 1.52998 * 117.52300 * 248.63299 * 5 3 2 8 8 C 1.53002 * 60.00108 * 252.51576 * 7 5 3 9 9 H 1.08996 * 117.52070 * 107.48154 * 8 7 5 10 10 C 1.50704 * 117.49494 * 252.51073 * 8 7 5 11 11 O 1.21276 * 120.00258 * 68.62036 * 10 8 7 12 12 N 1.34779 * 119.99604 * 248.62006 * 10 8 7 13 13 C 1.46497 * 119.99664 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46939 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47245 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47463 * 179.97438 * 15 14 13 17 17 C 1.46895 * 110.99989 * 190.00067 * 16 15 14 18 18 C 1.53241 * 109.33538 * 187.25118 * 17 16 15 19 19 N 1.47082 * 108.52509 * 306.16899 * 18 17 16 20 20 C 1.36935 * 120.87800 * 231.18634 * 19 18 17 21 21 H 1.07994 * 120.00243 * 27.12925 * 20 19 18 22 22 C 1.38815 * 119.99552 * 206.84012 * 20 19 18 23 23 N 1.31614 * 119.99986 * 17.18837 * 22 20 19 24 24 Si 1.86797 * 120.00057 * 197.17547 * 22 20 19 25 25 H 1.48508 * 109.47149 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47196 * 120.00464 * 24 22 20 27 27 H 1.48497 * 109.47565 * 240.00842 * 24 22 20 28 28 C 1.47072 * 118.23374 * 51.45730 * 19 18 17 29 29 C 1.46908 * 110.99894 * 314.30155 * 16 15 14 30 30 H 1.09007 * 109.46820 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47308 * 299.99954 * 1 2 3 32 32 H 1.08998 * 109.47238 * 59.99948 * 1 2 3 33 33 H 1.08998 * 117.50500 * 145.02707 * 7 5 3 34 34 H 1.09004 * 117.49705 * 0.02562 * 7 5 3 35 35 H 0.97002 * 120.00201 * 359.97438 * 12 10 8 36 36 H 1.08997 * 109.47456 * 59.99660 * 13 12 10 37 37 H 1.08999 * 109.46834 * 299.99566 * 13 12 10 38 38 H 1.08997 * 109.47313 * 59.99586 * 14 13 12 39 39 H 1.08999 * 109.47013 * 299.99469 * 14 13 12 40 40 H 1.09004 * 109.46850 * 59.99454 * 15 14 13 41 41 H 1.08999 * 109.46818 * 299.99756 * 15 14 13 42 42 H 1.08994 * 109.49506 * 67.29451 * 17 16 15 43 43 H 1.08994 * 109.51398 * 307.22151 * 17 16 15 44 44 H 1.09003 * 109.62622 * 186.45689 * 18 17 16 45 45 H 1.09001 * 109.79122 * 65.97420 * 18 17 16 46 46 H 0.97002 * 120.00194 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.62781 * 68.25550 * 28 19 18 48 48 H 1.09007 * 109.62956 * 188.83247 * 28 19 18 49 49 H 1.09005 * 109.49135 * 292.70628 * 29 16 15 50 50 H 1.09003 * 109.49306 * 52.75396 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0785 0.4884 -0.5538 7 6 4.2459 1.8059 1.2643 8 6 4.2007 2.6672 0.0006 9 1 3.5296 3.5261 0.0002 10 6 5.4860 2.8461 -0.7658 11 8 5.9784 1.9057 -1.3521 12 7 6.0882 4.0514 -0.7994 13 6 7.3372 4.2256 -1.5448 14 6 7.8059 5.6769 -1.4227 15 6 9.1108 5.8587 -2.2007 16 7 9.5605 7.2523 -2.0840 17 6 10.6729 7.5252 -3.0037 18 6 11.2295 8.9255 -2.7252 19 7 10.1207 9.8899 -2.7869 20 6 10.2112 11.0164 -3.5602 21 1 10.8441 11.0212 -4.4353 22 6 9.4848 12.1501 -3.2227 23 7 8.9855 12.2753 -2.0114 24 14 9.2162 13.4982 -4.4875 25 1 9.8742 13.1181 -5.7635 26 1 7.7601 13.6789 -4.7167 27 1 9.8002 14.7689 -3.9884 28 6 8.9146 9.6152 -1.9913 29 6 8.4468 8.1849 -2.3032 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 5.2051 1.3688 1.5415 34 1 3.6045 2.0979 2.0959 35 1 5.6941 4.8038 -0.3308 36 1 7.1704 3.9851 -2.5948 37 1 8.0994 3.5617 -1.1367 38 1 7.9726 5.9178 -0.3729 39 1 7.0436 6.3404 -1.8312 40 1 8.9444 5.6176 -3.2506 41 1 9.8729 5.1952 -1.7919 42 1 10.3156 7.4737 -4.0321 43 1 11.4589 6.7850 -2.8541 44 1 11.9771 9.1785 -3.4771 45 1 11.6831 8.9521 -1.7344 46 1 8.4776 13.0674 -1.7756 47 1 9.1478 9.7043 -0.9303 48 1 8.1309 10.3245 -2.2576 49 1 8.1205 8.1242 -3.3415 50 1 7.6180 7.9227 -1.6456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690055182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:37 Heat of formation + Delta-G solvation = -61.987645 kcal Electronic energy + Delta-G solvation = -28609.826514 eV Core-core repulsion = 24446.061837 eV Total energy + Delta-G solvation = -4163.764677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.22986 -40.07993 -38.39919 -37.47368 -36.34933 -35.67680 -34.40344 -32.10104 -30.50845 -29.92196 -28.74735 -27.19573 -25.69173 -24.68593 -23.71073 -23.04868 -22.29903 -21.22326 -20.94971 -20.06193 -19.08420 -18.63503 -17.41731 -17.02928 -16.81103 -16.77988 -16.21555 -15.94146 -15.25591 -14.93753 -14.67821 -14.39575 -14.25213 -14.24159 -13.77204 -13.67993 -13.42859 -13.21732 -13.05748 -12.94243 -12.90716 -12.48108 -12.14439 -11.89665 -11.64601 -11.39336 -11.30584 -11.29409 -11.21945 -11.05423 -10.97445 -10.85258 -10.69959 -10.45499 -10.29801 -10.20508 -10.03813 -9.72687 -9.57393 -9.34935 -8.51380 -7.81596 -6.66673 -5.78802 -3.19791 1.52330 1.97236 2.18735 2.85126 3.25477 3.36386 3.44457 3.46581 3.96289 4.14148 4.19907 4.30999 4.49866 4.50036 4.63161 4.64759 4.71544 4.88347 4.97935 5.02228 5.06428 5.11376 5.33846 5.36319 5.38166 5.44150 5.49501 5.56213 5.70419 5.85404 5.87632 5.94528 6.01695 6.11011 6.15664 6.18693 6.23411 6.35206 6.53191 6.68869 6.93335 7.16353 7.23948 7.24608 7.59685 7.63772 7.70433 7.81876 7.87250 8.43204 9.21029 9.84446 10.43098 11.29967 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.001633 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.733750 B =17143.569035 C =18193.636474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.494 3.506 4 O -0.504 6.504 5 C -0.138 4.138 6 H 0.151 0.849 7 C -0.114 4.114 8 C -0.157 4.157 9 H 0.141 0.859 10 C 0.543 3.457 11 O -0.539 6.539 12 N -0.720 5.720 13 C 0.121 3.879 14 C -0.136 4.136 15 C 0.059 3.941 16 N -0.533 5.533 17 C 0.045 3.955 18 C 0.148 3.852 19 N -0.596 5.596 20 C -0.251 4.251 21 H 0.066 0.934 22 C 0.001 3.999 23 N -0.903 5.903 24 Si 0.901 3.099 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.178 3.822 29 C 0.028 3.972 30 H 0.104 0.896 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.119 0.881 34 H 0.114 0.886 35 H 0.405 0.595 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.028 0.972 41 H 0.071 0.929 42 H 0.028 0.972 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.025 0.975 46 H 0.253 0.747 47 H 0.026 0.974 48 H 0.087 0.913 49 H 0.024 0.976 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.627 -24.339 6.979 28.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.337 3.663 4 O -0.392 6.392 5 C -0.158 4.158 6 H 0.169 0.831 7 C -0.151 4.151 8 C -0.178 4.178 9 H 0.159 0.841 10 C 0.329 3.671 11 O -0.416 6.416 12 N -0.371 5.371 13 C -0.003 4.003 14 C -0.174 4.174 15 C -0.070 4.070 16 N -0.258 5.258 17 C -0.084 4.084 18 C 0.021 3.979 19 N -0.319 5.319 20 C -0.381 4.381 21 H 0.084 0.916 22 C -0.198 4.198 23 N -0.548 5.548 24 Si 0.731 3.269 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.052 3.948 29 C -0.101 4.101 30 H 0.122 0.878 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.137 0.863 34 H 0.133 0.867 35 H 0.240 0.760 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.047 0.953 41 H 0.089 0.911 42 H 0.046 0.954 43 H 0.080 0.920 44 H 0.073 0.927 45 H 0.043 0.957 46 H 0.063 0.937 47 H 0.044 0.956 48 H 0.106 0.894 49 H 0.042 0.958 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -12.391 -24.480 7.061 28.331 hybrid contribution -0.967 1.059 -1.296 1.933 sum -13.358 -23.420 5.765 27.571 Atomic orbital electron populations 1.23336 0.75758 1.03992 1.02786 1.86488 1.23721 1.32811 1.83841 1.22500 0.90239 0.81453 0.72135 1.90693 1.66840 1.36387 1.45257 1.21656 0.88436 0.99681 1.06014 0.83150 1.23118 1.02823 0.99026 0.90132 1.22339 0.97827 0.95798 1.01871 0.84125 1.19401 0.84430 0.82871 0.80427 1.90724 1.65651 1.40204 1.45009 1.45902 1.26025 1.11605 1.53549 1.21395 0.84983 0.97396 0.96507 1.21963 0.98292 0.94476 1.02620 1.21972 0.95535 0.91806 0.97672 1.62048 1.09346 1.01383 1.52980 1.22606 0.93075 0.99441 0.93312 1.20978 0.90873 0.87466 0.98550 1.44148 1.12029 1.22357 1.53382 1.19243 1.26305 0.89302 1.03203 0.91630 1.25018 1.01959 0.96939 0.95836 1.70036 1.39462 1.28439 1.16891 0.86236 0.77650 0.81863 0.81117 1.20316 1.21608 1.21702 1.20962 0.90230 0.89627 0.94005 1.23105 0.92475 0.96227 0.98259 0.87792 0.91689 0.91665 0.86259 0.86734 0.76018 0.91399 0.91158 0.90168 0.90561 0.95345 0.91064 0.95418 0.92029 0.92653 0.95663 0.93690 0.95576 0.89448 0.95803 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.85 10.57 -39.23 -0.41 -3.27 16 3 C 0.49 4.50 7.74 36.00 0.28 4.78 16 4 O -0.50 -5.75 16.01 -18.75 -0.30 -6.05 16 5 C -0.14 -1.09 5.81 -91.77 -0.53 -1.62 16 6 H 0.15 1.21 7.67 -51.92 -0.40 0.82 16 7 C -0.11 -0.66 9.94 -26.73 -0.27 -0.92 16 8 C -0.16 -1.22 5.70 -91.77 -0.52 -1.74 16 9 H 0.14 1.02 7.67 -51.93 -0.40 0.62 16 10 C 0.54 5.52 7.61 -10.98 -0.08 5.44 16 11 O -0.54 -7.35 16.26 5.56 0.09 -7.26 16 12 N -0.72 -6.38 5.56 -60.30 -0.33 -6.72 16 13 C 0.12 1.21 5.67 -4.04 -0.02 1.18 16 14 C -0.14 -1.47 4.58 -26.73 -0.12 -1.59 16 15 C 0.06 0.78 5.27 -3.82 -0.02 0.76 16 16 N -0.53 -9.13 4.78 -234.02 -1.12 -10.25 16 17 C 0.05 0.80 5.58 -3.70 -0.02 0.78 16 18 C 0.15 3.15 6.69 -3.60 -0.02 3.13 16 19 N -0.60 -15.08 3.03 -171.74 -0.52 -15.60 16 20 C -0.25 -6.92 9.63 -15.06 -0.15 -7.07 16 21 H 0.07 1.78 7.88 -52.49 -0.41 1.37 16 22 C 0.00 0.02 4.93 -17.43 -0.09 -0.06 16 23 N -0.90 -26.15 11.16 55.49 0.62 -25.53 16 24 Si 0.90 21.67 29.59 -169.99 -5.03 16.64 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 28 C 0.18 4.24 5.45 -3.37 -0.02 4.22 16 29 C 0.03 0.53 5.06 -3.46 -0.02 0.52 16 30 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.32 8.13 -51.93 -0.42 -0.10 16 32 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 33 H 0.12 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.11 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.41 2.70 8.47 -40.82 -0.35 2.36 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.08 0.87 6.18 -51.93 -0.32 0.54 16 40 H 0.03 0.38 8.08 -51.93 -0.42 -0.04 16 41 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.94 8.11 -51.93 -0.42 0.52 16 44 H 0.06 1.13 7.95 -51.93 -0.41 0.72 16 45 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 47 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 48 H 0.09 2.31 6.12 -51.93 -0.32 1.99 16 49 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.07 1.08 5.73 -51.93 -0.30 0.78 16 LS Contribution 406.49 15.07 6.13 6.13 Total: -1.00 -34.05 406.49 -9.80 -43.84 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.38 Total: -0.97 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -0.54 Total: 9.05 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: -1.35 Total: -58.10 kcal Atomic # 8 Polarization: -15.96 SS G_CDS: -0.62 Total: -16.58 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.05 -9.80 -43.84 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690055182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.143 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds