Wall clock time and date at job start Sat Apr 11 2020 05:47:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34221 * 116.99849 * 2 1 4 4 O 1.20829 * 120.00033 * 0.02562 * 3 2 1 5 5 C 1.50693 * 120.00271 * 179.97438 * 3 2 1 6 6 H 1.09008 * 115.54709 * 34.33399 * 5 3 2 7 7 C 1.52998 * 117.52300 * 248.63299 * 5 3 2 8 8 C 1.53002 * 60.00108 * 252.51576 * 7 5 3 9 9 H 1.08996 * 117.52070 * 107.48154 * 8 7 5 10 10 C 1.50704 * 117.49494 * 252.51073 * 8 7 5 11 11 O 1.21276 * 120.00258 * 68.62036 * 10 8 7 12 12 N 1.34779 * 119.99604 * 248.62006 * 10 8 7 13 13 C 1.46497 * 119.99664 * 180.02562 * 12 10 8 14 14 C 1.53002 * 109.46939 * 179.97438 * 13 12 10 15 15 C 1.53002 * 109.47245 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47463 * 179.97438 * 15 14 13 17 17 C 1.46895 * 110.99989 * 190.00067 * 16 15 14 18 18 C 1.53241 * 109.33538 * 187.25118 * 17 16 15 19 19 N 1.47082 * 108.52509 * 306.16899 * 18 17 16 20 20 C 1.36935 * 120.87800 * 231.18634 * 19 18 17 21 21 H 1.07994 * 120.00243 * 27.12925 * 20 19 18 22 22 C 1.38815 * 119.99552 * 206.84012 * 20 19 18 23 23 N 1.31614 * 119.99986 * 17.18837 * 22 20 19 24 24 Si 1.86797 * 120.00057 * 197.17547 * 22 20 19 25 25 H 1.48508 * 109.47149 * 0.02562 * 24 22 20 26 26 H 1.48499 * 109.47196 * 120.00464 * 24 22 20 27 27 H 1.48497 * 109.47565 * 240.00842 * 24 22 20 28 28 C 1.47072 * 118.23374 * 51.45730 * 19 18 17 29 29 C 1.46908 * 110.99894 * 314.30155 * 16 15 14 30 30 H 1.09007 * 109.46820 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47308 * 299.99954 * 1 2 3 32 32 H 1.08998 * 109.47238 * 59.99948 * 1 2 3 33 33 H 1.08998 * 117.50500 * 145.02707 * 7 5 3 34 34 H 1.09004 * 117.49705 * 0.02562 * 7 5 3 35 35 H 0.97002 * 120.00201 * 359.97438 * 12 10 8 36 36 H 1.08997 * 109.47456 * 59.99660 * 13 12 10 37 37 H 1.08999 * 109.46834 * 299.99566 * 13 12 10 38 38 H 1.08997 * 109.47313 * 59.99586 * 14 13 12 39 39 H 1.08999 * 109.47013 * 299.99469 * 14 13 12 40 40 H 1.09004 * 109.46850 * 59.99454 * 15 14 13 41 41 H 1.08999 * 109.46818 * 299.99756 * 15 14 13 42 42 H 1.08994 * 109.49506 * 67.29451 * 17 16 15 43 43 H 1.08994 * 109.51398 * 307.22151 * 17 16 15 44 44 H 1.09003 * 109.62622 * 186.45689 * 18 17 16 45 45 H 1.09001 * 109.79122 * 65.97420 * 18 17 16 46 46 H 0.97002 * 120.00194 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.62781 * 68.25550 * 28 19 18 48 48 H 1.09007 * 109.62956 * 188.83247 * 28 19 18 49 49 H 1.09005 * 109.49135 * 292.70628 * 29 16 15 50 50 H 1.09003 * 109.49306 * 52.75396 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 4.0785 0.4884 -0.5538 7 6 4.2459 1.8059 1.2643 8 6 4.2007 2.6672 0.0006 9 1 3.5296 3.5261 0.0002 10 6 5.4860 2.8461 -0.7658 11 8 5.9784 1.9057 -1.3521 12 7 6.0882 4.0514 -0.7994 13 6 7.3372 4.2256 -1.5448 14 6 7.8059 5.6769 -1.4227 15 6 9.1108 5.8587 -2.2007 16 7 9.5605 7.2523 -2.0840 17 6 10.6729 7.5252 -3.0037 18 6 11.2295 8.9255 -2.7252 19 7 10.1207 9.8899 -2.7869 20 6 10.2112 11.0164 -3.5602 21 1 10.8441 11.0212 -4.4353 22 6 9.4848 12.1501 -3.2227 23 7 8.9855 12.2753 -2.0114 24 14 9.2162 13.4982 -4.4875 25 1 9.8742 13.1181 -5.7635 26 1 7.7601 13.6789 -4.7167 27 1 9.8002 14.7689 -3.9884 28 6 8.9146 9.6152 -1.9913 29 6 8.4468 8.1849 -2.3032 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 5.2051 1.3688 1.5415 34 1 3.6045 2.0979 2.0959 35 1 5.6941 4.8038 -0.3308 36 1 7.1704 3.9851 -2.5948 37 1 8.0994 3.5617 -1.1367 38 1 7.9726 5.9178 -0.3729 39 1 7.0436 6.3404 -1.8312 40 1 8.9444 5.6176 -3.2506 41 1 9.8729 5.1952 -1.7919 42 1 10.3156 7.4737 -4.0321 43 1 11.4589 6.7850 -2.8541 44 1 11.9771 9.1785 -3.4771 45 1 11.6831 8.9521 -1.7344 46 1 8.4776 13.0674 -1.7756 47 1 9.1478 9.7043 -0.9303 48 1 8.1309 10.3245 -2.2576 49 1 8.1205 8.1242 -3.3415 50 1 7.6180 7.9227 -1.6456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690055182.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:35 Heat of formation + Delta-G solvation = -85.436397 kcal Electronic energy + Delta-G solvation = -28610.843328 eV Core-core repulsion = 24446.061837 eV Total energy + Delta-G solvation = -4164.781491 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.89836 -40.84746 -39.82832 -38.14095 -37.21740 -36.70440 -35.79626 -33.67960 -31.96393 -31.58382 -29.28915 -28.60983 -26.77670 -25.55660 -24.95019 -24.38296 -23.69418 -22.15253 -21.75645 -20.95463 -20.66581 -19.29914 -18.72305 -18.07758 -17.68928 -17.43706 -17.19462 -16.84667 -16.77903 -16.16463 -15.87576 -15.59234 -15.36080 -15.24777 -15.22510 -14.99874 -14.72329 -14.39293 -14.36722 -13.77168 -13.48023 -13.37878 -13.33589 -12.97776 -12.93861 -12.86791 -12.66885 -12.47866 -12.25459 -12.02332 -11.99176 -11.97160 -11.86539 -11.79950 -11.76832 -11.66177 -11.46986 -11.30048 -11.00245 -10.59355 -10.15024 -9.22577 -8.67250 -7.88020 -5.32464 0.86388 1.31803 1.45150 1.47035 1.53477 1.57517 2.14284 2.50256 2.64843 3.02915 3.27349 3.36845 3.59986 3.61481 3.70043 3.88838 3.95539 4.04055 4.09423 4.15252 4.27026 4.30588 4.35756 4.38547 4.52164 4.57586 4.61648 4.65512 4.66450 4.69161 4.71253 4.79395 4.82021 4.89027 4.91372 5.05300 5.17830 5.19811 5.24066 5.25474 5.38537 5.39389 5.61400 5.70181 6.20237 6.30286 6.38065 6.46505 6.59125 7.13506 7.13673 7.84493 8.38391 9.18654 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018396 B = 0.001633 C = 0.001539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1521.733750 B =17143.569035 C =18193.636474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.496 3.504 4 O -0.532 6.532 5 C -0.149 4.149 6 H 0.146 0.854 7 C -0.089 4.089 8 C -0.161 4.161 9 H 0.147 0.853 10 C 0.543 3.457 11 O -0.577 6.577 12 N -0.712 5.712 13 C 0.129 3.871 14 C -0.124 4.124 15 C 0.060 3.940 16 N -0.541 5.541 17 C 0.055 3.945 18 C 0.143 3.857 19 N -0.616 5.616 20 C -0.264 4.264 21 H 0.066 0.934 22 C -0.050 4.050 23 N -0.934 5.934 24 Si 0.967 3.033 25 H -0.268 1.268 26 H -0.289 1.289 27 H -0.291 1.291 28 C 0.183 3.817 29 C 0.046 3.954 30 H 0.133 0.867 31 H 0.067 0.933 32 H 0.060 0.940 33 H 0.130 0.870 34 H 0.132 0.868 35 H 0.417 0.583 36 H 0.058 0.942 37 H 0.072 0.928 38 H 0.085 0.915 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.089 0.911 42 H 0.021 0.979 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.017 0.983 46 H 0.250 0.750 47 H 0.000 1.000 48 H 0.055 0.945 49 H 0.014 0.986 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.944 -25.942 7.224 29.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.341 3.659 4 O -0.422 6.422 5 C -0.168 4.168 6 H 0.164 0.836 7 C -0.126 4.126 8 C -0.182 4.182 9 H 0.165 0.835 10 C 0.330 3.670 11 O -0.458 6.458 12 N -0.363 5.363 13 C 0.005 3.995 14 C -0.162 4.162 15 C -0.068 4.068 16 N -0.266 5.266 17 C -0.074 4.074 18 C 0.017 3.983 19 N -0.340 5.340 20 C -0.395 4.395 21 H 0.083 0.917 22 C -0.246 4.246 23 N -0.581 5.581 24 Si 0.795 3.205 25 H -0.193 1.193 26 H -0.216 1.216 27 H -0.218 1.218 28 C 0.058 3.942 29 C -0.083 4.083 30 H 0.151 0.849 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.090 0.910 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.049 0.951 41 H 0.107 0.893 42 H 0.040 0.960 43 H 0.113 0.887 44 H 0.077 0.923 45 H 0.035 0.965 46 H 0.060 0.940 47 H 0.018 0.982 48 H 0.073 0.927 49 H 0.032 0.968 50 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -12.701 -26.106 7.313 29.939 hybrid contribution -0.836 1.497 -1.344 2.178 sum -13.537 -24.610 5.969 28.715 Atomic orbital electron populations 1.23613 0.74291 1.05936 1.02732 1.86484 1.25252 1.32301 1.83421 1.22706 0.90640 0.81315 0.71274 1.90676 1.67512 1.37214 1.46827 1.21665 0.87780 0.99578 1.07807 0.83627 1.23278 1.03118 0.96717 0.89473 1.22276 0.96742 0.96093 1.03127 0.83543 1.19742 0.84838 0.82502 0.79918 1.90706 1.66863 1.41447 1.46738 1.45832 1.25587 1.11807 1.53077 1.21222 0.85447 0.96672 0.96161 1.21814 0.96996 0.94874 1.02466 1.22057 0.97134 0.89205 0.98417 1.61988 1.08652 1.03172 1.52800 1.22448 0.94146 0.97776 0.93041 1.21136 0.90198 0.88806 0.98176 1.44443 1.13636 1.22597 1.53295 1.19562 1.26108 0.90265 1.03519 0.91663 1.25766 1.02115 0.99176 0.97502 1.70185 1.40326 1.28991 1.18571 0.85219 0.77281 0.78881 0.79126 1.19266 1.21586 1.21827 1.20754 0.89098 0.92183 0.92215 1.22785 0.93657 0.93648 0.98208 0.84917 0.91435 0.92072 0.85170 0.84987 0.74605 0.92328 0.91011 0.89636 0.90956 0.95111 0.89265 0.96039 0.88726 0.92344 0.96514 0.94034 0.98197 0.92661 0.96753 0.88908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 10.56 113.37 1.20 1.45 16 2 O -0.36 -5.49 10.57 -51.33 -0.54 -6.03 16 3 C 0.50 8.69 7.74 71.23 0.55 9.24 16 4 O -0.53 -11.86 16.01 21.95 0.35 -11.51 16 5 C -0.15 -2.18 5.81 -11.54 -0.07 -2.25 16 6 H 0.15 2.29 7.67 -2.38 -0.02 2.27 16 7 C -0.09 -0.84 9.94 30.59 0.30 -0.53 16 8 C -0.16 -2.28 5.70 -11.54 -0.07 -2.34 16 9 H 0.15 1.92 7.67 -2.39 -0.02 1.90 16 10 C 0.54 10.34 7.61 87.66 0.67 11.00 16 11 O -0.58 -15.34 16.26 -3.02 -0.05 -15.39 16 12 N -0.71 -11.30 5.56 -463.06 -2.57 -13.87 16 13 C 0.13 2.31 5.67 86.38 0.49 2.80 16 14 C -0.12 -2.36 4.58 30.60 0.14 -2.22 16 15 C 0.06 1.41 5.27 86.30 0.45 1.86 16 16 N -0.54 -17.51 4.78 -894.32 -4.27 -21.78 16 17 C 0.06 1.86 5.58 86.38 0.48 2.34 16 18 C 0.14 6.02 6.69 86.35 0.58 6.59 16 19 N -0.62 -31.58 3.03 -697.26 -2.11 -33.69 16 20 C -0.26 -14.77 9.63 84.03 0.81 -13.96 16 21 H 0.07 3.56 7.88 -2.91 -0.02 3.54 16 22 C -0.05 -2.83 4.93 84.86 0.42 -2.41 16 23 N -0.93 -55.47 11.16 21.65 0.24 -55.23 16 24 Si 0.97 45.08 29.59 68.60 2.03 47.11 16 25 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 26 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 28 C 0.18 8.93 5.45 86.50 0.47 9.40 16 29 C 0.05 1.70 5.06 86.53 0.44 2.14 16 30 H 0.13 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.07 0.61 8.13 -2.39 -0.02 0.59 16 32 H 0.06 0.63 8.13 -2.39 -0.02 0.61 16 33 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.42 4.65 8.47 -92.71 -0.79 3.86 16 36 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.46 6.18 -2.39 -0.01 1.45 16 40 H 0.03 0.73 8.08 -2.38 -0.02 0.72 16 41 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 42 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 43 H 0.09 2.59 8.11 -2.39 -0.02 2.57 16 44 H 0.06 2.37 7.95 -2.39 -0.02 2.35 16 45 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 47 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 48 H 0.06 3.02 6.12 -2.38 -0.01 3.01 16 49 H 0.01 0.55 8.14 -2.38 -0.02 0.54 16 50 H 0.09 2.89 5.73 -2.39 -0.01 2.88 16 Total: -1.00 -74.87 406.49 0.09 -74.77 By element: Atomic # 1 Polarization: 12.37 SS G_CDS: 0.15 Total: 12.52 kcal Atomic # 6 Polarization: 16.24 SS G_CDS: 6.87 Total: 23.11 kcal Atomic # 7 Polarization: -115.86 SS G_CDS: -8.72 Total: -124.58 kcal Atomic # 8 Polarization: -32.70 SS G_CDS: -0.24 Total: -32.93 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -74.87 0.09 -74.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690055182.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.664 kcal (2) G-P(sol) polarization free energy of solvation -74.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds