Wall clock time and date at job start Sat Apr 11 2020 05:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34233 * 116.99842 * 2 1 4 4 O 1.20826 * 120.00127 * 359.97438 * 3 2 1 5 5 C 1.50702 * 119.99764 * 180.02562 * 3 2 1 6 6 H 1.08998 * 115.54971 * 325.66708 * 5 3 2 7 7 C 1.53000 * 117.52034 * 111.37064 * 5 3 2 8 8 C 1.52995 * 60.00183 * 107.47832 * 7 5 3 9 9 H 1.09002 * 117.50454 * 252.51803 * 8 7 5 10 10 C 1.50696 * 117.51654 * 107.47870 * 8 7 5 11 11 O 1.21276 * 120.00293 * 291.28617 * 10 8 7 12 12 N 1.34780 * 120.00052 * 111.29027 * 10 8 7 13 13 C 1.46497 * 120.00483 * 180.02562 * 12 10 8 14 14 C 1.52994 * 109.47282 * 179.97438 * 13 12 10 15 15 C 1.53006 * 109.47097 * 179.97438 * 14 13 12 16 16 N 1.46899 * 109.47202 * 179.97438 * 15 14 13 17 17 C 1.46905 * 110.99816 * 294.30391 * 16 15 14 18 18 C 1.53234 * 109.33677 * 172.74936 * 17 16 15 19 19 N 1.47081 * 108.52572 * 53.82676 * 18 17 16 20 20 C 1.36938 * 120.87848 * 128.83397 * 19 18 17 21 21 H 1.07999 * 119.99741 * 206.62363 * 20 19 18 22 22 C 1.38808 * 120.00229 * 26.63257 * 20 19 18 23 23 N 1.31626 * 120.00246 * 17.03322 * 22 20 19 24 24 Si 1.86799 * 120.00152 * 197.03636 * 22 20 19 25 25 H 1.48502 * 109.47141 * 59.99732 * 24 22 20 26 26 H 1.48497 * 109.47407 * 179.97438 * 24 22 20 27 27 H 1.48499 * 109.47087 * 300.00046 * 24 22 20 28 28 C 1.47070 * 118.23738 * 308.81740 * 19 18 17 29 29 C 1.46897 * 110.99857 * 170.00259 * 16 15 14 30 30 H 1.09003 * 109.47042 * 60.00259 * 1 2 3 31 31 H 1.08997 * 109.47087 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47114 * 300.00294 * 1 2 3 33 33 H 1.09010 * 117.49574 * 359.97438 * 7 5 3 34 34 H 1.08992 * 117.50161 * 214.97074 * 7 5 3 35 35 H 0.97003 * 119.99572 * 359.97438 * 12 10 8 36 36 H 1.08999 * 109.46936 * 299.99654 * 13 12 10 37 37 H 1.09002 * 109.47066 * 59.98939 * 13 12 10 38 38 H 1.09002 * 109.47339 * 299.99414 * 14 13 12 39 39 H 1.08996 * 109.47477 * 60.00188 * 14 13 12 40 40 H 1.08999 * 109.47231 * 299.99909 * 15 14 13 41 41 H 1.09008 * 109.46908 * 60.00013 * 15 14 13 42 42 H 1.09006 * 109.49097 * 292.70688 * 17 16 15 43 43 H 1.08995 * 109.49185 * 52.78523 * 17 16 15 44 44 H 1.09004 * 109.62931 * 294.11215 * 18 17 16 45 45 H 1.09008 * 109.78904 * 173.63179 * 18 17 16 46 46 H 0.96998 * 119.99947 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.62735 * 291.47361 * 28 19 18 48 48 H 1.09000 * 109.79251 * 170.98723 * 28 19 18 49 49 H 1.08998 * 109.49256 * 307.21049 * 29 16 15 50 50 H 1.08996 * 109.49526 * 67.29287 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 4.0785 0.4884 0.5537 7 6 4.2459 1.8059 -1.2643 8 6 4.2008 2.6672 -0.0006 9 1 3.5296 3.5260 -0.0005 10 6 5.4856 2.8462 0.7661 11 8 5.9770 1.9062 1.3542 12 7 6.0888 4.0511 0.7985 13 6 7.3381 4.2252 1.5434 14 6 7.8084 5.6757 1.4187 15 6 9.1130 5.8576 2.1973 16 7 9.5649 7.2502 2.0771 17 6 9.9302 7.5672 0.6899 18 6 10.2206 9.0671 0.5718 19 7 11.2299 9.4284 1.5788 20 6 12.3553 10.1249 1.2274 21 1 13.2575 10.0237 1.8124 22 6 12.3365 10.9610 0.1196 23 7 11.1878 11.3507 -0.3915 24 14 13.9414 11.5331 -0.6462 25 1 14.7215 10.3537 -1.0999 26 1 13.6504 12.4104 -1.8084 27 1 14.7284 12.2894 0.3608 28 6 10.9981 9.0222 2.9732 29 6 10.6771 7.5239 2.9969 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.6044 2.0980 -2.0959 34 1 5.2051 1.3688 -1.5415 35 1 5.6959 4.8029 0.3279 36 1 7.1713 3.9860 2.5937 37 1 8.0997 3.5602 1.1360 38 1 7.9755 5.9145 0.3684 39 1 7.0470 6.3409 1.8260 40 1 8.9456 5.6190 3.2476 41 1 9.8747 5.1924 1.7904 42 1 10.8187 7.0014 0.4094 43 1 9.1061 7.3029 0.0273 44 1 9.3059 9.6324 0.7509 45 1 10.6008 9.2921 -0.4247 46 1 11.1748 11.9346 -1.1659 47 1 10.1582 9.5831 3.3831 48 1 11.8916 9.2146 3.5671 49 1 10.3946 7.2284 4.0073 50 1 11.5551 6.9589 2.6843 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690055248.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:49 Heat of formation + Delta-G solvation = -65.009111 kcal Electronic energy + Delta-G solvation = -28514.223496 eV Core-core repulsion = 24350.327798 eV Total energy + Delta-G solvation = -4163.895698 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.23360 -40.07630 -38.32500 -37.48048 -36.35667 -35.67267 -34.38860 -32.09365 -30.55774 -29.93027 -28.75442 -27.19864 -25.68493 -24.68960 -23.67873 -22.84764 -22.32671 -21.27488 -21.01820 -20.08488 -19.09981 -18.64805 -17.42333 -17.02826 -16.81760 -16.76965 -16.18980 -15.94979 -15.22360 -14.94584 -14.67194 -14.48144 -14.25977 -14.03642 -13.80107 -13.70765 -13.43367 -13.21539 -13.04395 -12.96262 -12.90589 -12.48382 -12.16708 -11.87477 -11.59342 -11.39151 -11.34018 -11.30845 -11.20831 -11.04620 -10.97568 -10.89287 -10.72300 -10.44783 -10.29258 -10.20411 -10.03663 -9.73492 -9.59850 -9.34605 -8.50518 -7.83545 -6.66635 -5.78409 -3.19390 1.51833 1.96961 2.18560 2.85238 3.25515 3.38095 3.43804 3.44992 3.96263 4.14065 4.19436 4.30356 4.49727 4.50206 4.62456 4.64479 4.70818 4.89964 4.99336 5.03703 5.07098 5.16192 5.34165 5.36315 5.38214 5.43838 5.47705 5.59311 5.70005 5.84740 5.88673 5.94013 6.02551 6.11929 6.15735 6.21463 6.24594 6.34812 6.54526 6.69246 6.93285 7.16807 7.23384 7.24443 7.59874 7.64040 7.70219 7.81612 7.87531 8.43470 9.21286 9.84722 10.43279 11.30426 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.025303 B = 0.001523 C = 0.001480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.324144 B =18386.024007 C =18911.492868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.352 6.352 3 C 0.494 3.506 4 O -0.504 6.504 5 C -0.138 4.138 6 H 0.151 0.849 7 C -0.114 4.114 8 C -0.157 4.157 9 H 0.141 0.859 10 C 0.543 3.457 11 O -0.539 6.539 12 N -0.720 5.720 13 C 0.121 3.879 14 C -0.129 4.129 15 C 0.059 3.941 16 N -0.533 5.533 17 C 0.033 3.967 18 C 0.178 3.822 19 N -0.595 5.595 20 C -0.253 4.253 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.904 5.904 24 Si 0.903 3.097 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.148 3.852 29 C 0.045 3.955 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.119 0.881 35 H 0.405 0.595 36 H 0.069 0.931 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.029 0.971 42 H 0.024 0.976 43 H 0.062 0.938 44 H 0.025 0.975 45 H 0.088 0.912 46 H 0.254 0.746 47 H 0.025 0.975 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.325 -21.876 -0.675 28.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.269 6.269 3 C 0.337 3.663 4 O -0.392 6.392 5 C -0.158 4.158 6 H 0.168 0.832 7 C -0.151 4.151 8 C -0.178 4.178 9 H 0.159 0.841 10 C 0.328 3.672 11 O -0.416 6.416 12 N -0.371 5.371 13 C -0.003 4.003 14 C -0.167 4.167 15 C -0.070 4.070 16 N -0.258 5.258 17 C -0.096 4.096 18 C 0.051 3.949 19 N -0.319 5.319 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.549 5.549 24 Si 0.732 3.268 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.022 3.978 29 C -0.085 4.085 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.083 0.917 33 H 0.133 0.867 34 H 0.137 0.863 35 H 0.240 0.760 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.047 0.953 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.044 0.956 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.043 0.957 48 H 0.074 0.926 49 H 0.080 0.920 50 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -18.579 -21.803 -0.244 28.646 hybrid contribution 0.975 0.245 -0.804 1.287 sum -17.604 -21.558 -1.048 27.852 Atomic orbital electron populations 1.23334 0.75773 1.03995 1.02774 1.86491 1.23712 1.32809 1.83839 1.22505 0.90236 0.81446 0.72109 1.90689 1.66845 1.36388 1.45288 1.21657 0.88423 0.99685 1.06026 0.83152 1.23121 1.02838 0.99032 0.90140 1.22335 0.97832 0.95774 1.01873 0.84128 1.19400 0.84431 0.82870 0.80452 1.90724 1.65691 1.40214 1.44967 1.45902 1.26015 1.11652 1.53486 1.21395 0.84902 0.97455 0.96563 1.21805 0.98608 0.94290 1.01964 1.21938 0.94931 0.90380 0.99798 1.61947 1.36768 1.19583 1.07499 1.22948 0.97583 1.01328 0.87743 1.20861 0.91614 0.87284 0.95092 1.44105 1.22593 1.63866 1.01295 1.19163 0.88826 1.18914 1.11330 0.91707 1.25013 0.96585 0.97108 1.00973 1.70021 1.23500 1.36297 1.25033 0.86366 0.83367 0.78181 0.78837 1.21135 1.21610 1.20883 1.20972 0.98099 0.90732 0.88028 1.22611 0.91224 0.99751 0.94877 0.91700 0.87795 0.91664 0.86725 0.86263 0.76017 0.91240 0.91394 0.90894 0.90279 0.91176 0.95318 0.95778 0.91984 0.95644 0.89405 0.93588 0.95694 0.92645 0.92026 0.95442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 101.05 1.07 1.25 16 2 O -0.35 -2.81 10.57 -39.27 -0.41 -3.23 16 3 C 0.49 4.44 7.74 36.01 0.28 4.72 16 4 O -0.50 -5.65 16.01 -18.75 -0.30 -5.95 16 5 C -0.14 -1.08 5.81 -91.77 -0.53 -1.61 16 6 H 0.15 1.21 7.67 -51.93 -0.40 0.81 16 7 C -0.11 -0.67 9.94 -26.73 -0.27 -0.93 16 8 C -0.16 -1.21 5.70 -91.78 -0.52 -1.73 16 9 H 0.14 1.00 7.67 -51.93 -0.40 0.60 16 10 C 0.54 5.49 7.61 -10.99 -0.08 5.40 16 11 O -0.54 -7.34 16.26 5.56 0.09 -7.25 16 12 N -0.72 -6.34 5.56 -60.30 -0.33 -6.67 16 13 C 0.12 1.20 5.67 -4.05 -0.02 1.17 16 14 C -0.13 -1.38 5.26 -26.73 -0.14 -1.53 16 15 C 0.06 0.77 4.96 -3.82 -0.02 0.75 16 16 N -0.53 -9.12 4.63 -234.31 -1.08 -10.21 16 17 C 0.03 0.62 5.46 -3.70 -0.02 0.60 16 18 C 0.18 4.23 5.42 -3.60 -0.02 4.22 16 19 N -0.60 -15.06 3.04 -172.02 -0.52 -15.59 16 20 C -0.25 -6.97 9.63 -15.06 -0.15 -7.11 16 21 H 0.07 1.75 7.88 -52.49 -0.41 1.34 16 22 C 0.00 0.04 4.93 -17.43 -0.09 -0.04 16 23 N -0.90 -26.12 11.15 55.49 0.62 -25.50 16 24 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 25 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 28 C 0.15 3.15 6.69 -3.61 -0.02 3.13 16 29 C 0.04 0.79 5.62 -3.70 -0.02 0.77 16 30 H 0.06 0.31 8.13 -51.93 -0.42 -0.11 16 31 H 0.10 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.34 8.13 -51.93 -0.42 -0.08 16 33 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 34 H 0.12 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.41 2.67 8.47 -40.82 -0.35 2.32 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.81 6.40 -51.93 -0.33 0.48 16 39 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 41 H 0.03 0.38 8.12 -51.92 -0.42 -0.04 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 1.03 6.16 -51.93 -0.32 0.71 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 2.32 6.11 -51.92 -0.32 2.00 16 46 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 47 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 48 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 49 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 50 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 407.54 15.07 6.14 6.14 Total: -1.00 -33.89 407.54 -9.79 -43.68 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -8.40 Total: -1.07 kcal Atomic # 6 Polarization: 9.62 SS G_CDS: -0.56 Total: 9.06 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -1.32 Total: -57.97 kcal Atomic # 8 Polarization: -15.80 SS G_CDS: -0.62 Total: -16.43 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -33.89 -9.79 -43.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690055248.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.330 kcal (2) G-P(sol) polarization free energy of solvation -33.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds