Wall clock time and date at job start Sat Apr 11 2020 05:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42909 * 113.99677 * 2 1 4 4 C 1.50700 * 109.46652 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00173 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99650 * 179.97438 * 4 3 2 7 7 C 1.47182 * 121.04228 * 0.02562 * 6 4 3 8 8 C 1.53075 * 109.29211 * 233.28391 * 7 6 4 9 9 C 1.53234 * 109.88046 * 306.63070 * 8 7 6 10 10 C 1.52688 * 109.00366 * 60.40335 * 9 8 7 11 11 H 1.08999 * 109.36961 * 56.74671 * 10 9 8 12 12 C 1.52712 * 111.23268 * 177.66748 * 10 9 8 13 13 N 1.47075 * 108.89201 * 180.45649 * 12 10 9 14 14 C 1.46896 * 110.99884 * 174.40948 * 13 12 10 15 15 C 1.50706 * 109.47493 * 293.62309 * 14 13 12 16 16 O 1.21287 * 119.99759 * 353.73926 * 15 14 13 17 17 N 1.34776 * 120.00039 * 173.73629 * 15 14 13 18 18 C 1.37093 * 119.99591 * 180.27369 * 17 15 14 19 19 H 1.07999 * 120.00636 * 359.72943 * 18 17 15 20 20 C 1.38956 * 119.99735 * 179.72541 * 18 17 15 21 21 N 1.31412 * 119.99936 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99885 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46980 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46866 * 120.00242 * 22 20 18 25 25 H 1.48500 * 109.46890 * 239.99744 * 22 20 18 26 26 C 1.46708 * 111.82040 * 298.96487 * 13 12 10 27 27 C 1.53245 * 110.08748 * 60.35973 * 26 13 12 28 28 C 1.46606 * 121.04260 * 180.02562 * 6 4 3 29 29 H 1.09003 * 109.52269 * 244.21355 * 28 6 4 30 30 H 1.09001 * 109.47021 * 60.00131 * 1 2 3 31 31 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47493 * 300.00415 * 1 2 3 33 33 H 1.08999 * 109.47213 * 59.99887 * 3 2 1 34 34 H 1.08994 * 109.47238 * 299.99773 * 3 2 1 35 35 H 1.08993 * 109.50100 * 113.34203 * 7 6 4 36 36 H 1.09000 * 109.52615 * 353.24592 * 7 6 4 37 37 H 1.08995 * 109.40192 * 186.50339 * 8 7 6 38 38 H 1.09003 * 109.39847 * 66.75266 * 8 7 6 39 39 H 1.09001 * 109.54797 * 300.54444 * 9 8 7 40 40 H 1.08999 * 109.62517 * 180.30615 * 9 8 7 41 41 H 1.09006 * 109.57120 * 60.63364 * 12 10 9 42 42 H 1.09003 * 109.57201 * 300.28071 * 12 10 9 43 43 H 1.08997 * 109.47123 * 173.62566 * 14 13 12 44 44 H 1.09001 * 109.47549 * 53.62211 * 14 13 12 45 45 H 0.96995 * 119.99906 * 0.02562 * 17 15 14 46 46 H 0.97006 * 119.99870 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.36755 * 180.54631 * 26 13 12 48 48 H 1.09003 * 109.36861 * 300.17177 * 26 13 12 49 49 H 1.09006 * 109.60633 * 181.71653 * 27 26 13 50 50 H 1.08997 * 109.74227 * 61.30871 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0340 0.0916 0.0006 6 7 4.2764 2.2969 0.0002 7 6 3.6676 3.6369 -0.0003 8 6 4.2449 4.4542 -1.1587 9 6 5.7756 4.4474 -1.0893 10 6 6.2717 3.0073 -1.1955 11 1 5.8957 2.5624 -2.1168 12 6 7.7976 2.9461 -1.1894 13 7 8.2184 1.5415 -1.3045 14 6 9.6777 1.4383 -1.4365 15 6 10.1076 2.0426 -2.7485 16 8 9.2737 2.4097 -3.5491 17 7 11.4185 2.1752 -3.0320 18 6 11.8094 2.7301 -4.2231 19 1 11.0670 3.0570 -4.9361 20 6 13.1609 2.8721 -4.5131 21 7 14.0643 2.4739 -3.6457 22 14 13.6936 3.6288 -6.1358 23 1 12.4928 3.9922 -6.9303 24 1 14.4998 4.8477 -5.8724 25 1 14.5116 2.6486 -6.8942 26 6 7.7336 0.7331 -0.1803 27 6 6.2020 0.7578 -0.1361 28 6 5.7397 2.2078 0.0003 29 1 6.1305 2.6321 0.9252 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8465 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8878 4.1369 0.9429 36 1 2.5881 3.5466 -0.1211 37 1 3.8840 5.4806 -1.0929 38 1 3.9234 4.0185 -2.1047 39 1 6.0996 4.8758 -0.1408 40 1 6.1821 5.0348 -1.9126 41 1 8.1761 3.3653 -0.2571 42 1 8.1892 3.5148 -2.0328 43 1 9.9720 0.3892 -1.4061 44 1 10.1556 1.9737 -0.6161 45 1 12.0853 1.8813 -2.3919 46 1 15.0078 2.5727 -3.8483 47 1 8.0753 -0.2949 -0.3005 48 1 8.1287 1.1368 0.7520 49 1 5.8514 0.1802 0.7193 50 1 5.8003 0.3308 -1.0550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690314730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:04 Heat of formation + Delta-G solvation = -94.919450 kcal Electronic energy + Delta-G solvation = -30792.855465 eV Core-core repulsion = 26627.662758 eV Total energy + Delta-G solvation = -4165.192707 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.97353 -39.01924 -38.12866 -37.32918 -36.44549 -33.88365 -33.31504 -32.55895 -31.15800 -30.18452 -29.14829 -27.32456 -26.31983 -25.44274 -24.39474 -23.20389 -22.85026 -20.82746 -20.01374 -19.37766 -19.08034 -17.80468 -17.34088 -16.83804 -16.61649 -16.01619 -15.65064 -15.35232 -15.13768 -15.07553 -14.76359 -14.61603 -14.47581 -13.94503 -13.72760 -13.62648 -13.27137 -13.24981 -12.97802 -12.88504 -12.71713 -12.44568 -12.11967 -11.88337 -11.74508 -11.49640 -11.48635 -11.35841 -11.29950 -11.05111 -10.88360 -10.62399 -10.61315 -10.32260 -10.20342 -10.16854 -10.14390 -9.45183 -9.20459 -8.69293 -8.33448 -7.92114 -7.74527 -6.37941 -3.78362 2.41507 2.49036 3.18459 3.28659 3.35901 3.55765 3.96791 4.03205 4.25281 4.26959 4.45126 4.64752 4.67653 4.74866 4.79352 4.83416 4.93565 4.98505 5.01335 5.03570 5.16997 5.24078 5.28711 5.29266 5.33733 5.48877 5.53348 5.56249 5.64824 5.72127 5.78405 5.87530 5.91570 5.95619 6.02255 6.07502 6.26619 6.27211 6.36732 6.46680 6.48487 6.63830 6.71747 7.21186 7.39533 7.53867 7.59015 8.05009 8.11310 8.66927 9.22630 9.59818 10.12095 10.80023 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.002304 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.969746 B =12149.500271 C =12571.850347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.366 6.366 3 C 0.043 3.957 4 C 0.515 3.485 5 O -0.507 6.507 6 N -0.607 5.607 7 C 0.107 3.893 8 C -0.134 4.134 9 C -0.114 4.114 10 C -0.093 4.093 11 H 0.085 0.915 12 C 0.068 3.932 13 N -0.519 5.519 14 C 0.047 3.953 15 C 0.445 3.555 16 O -0.576 6.576 17 N -0.567 5.567 18 C -0.296 4.296 19 H 0.103 0.897 20 C 0.020 3.980 21 N -0.903 5.903 22 Si 0.928 3.072 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.051 3.949 27 C -0.098 4.098 28 C 0.150 3.850 29 H 0.068 0.932 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.077 0.923 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.023 0.977 42 H 0.101 0.899 43 H 0.089 0.911 44 H 0.045 0.955 45 H 0.392 0.608 46 H 0.270 0.730 47 H 0.077 0.923 48 H 0.025 0.975 49 H 0.084 0.916 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.543 2.715 12.484 26.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.283 6.283 3 C -0.037 4.037 4 C 0.302 3.698 5 O -0.382 6.382 6 N -0.343 5.343 7 C -0.016 4.016 8 C -0.172 4.172 9 C -0.152 4.152 10 C -0.113 4.113 11 H 0.104 0.896 12 C -0.060 4.060 13 N -0.243 5.243 14 C -0.084 4.084 15 C 0.230 3.770 16 O -0.459 6.459 17 N -0.204 5.204 18 C -0.425 4.425 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.544 5.544 22 Si 0.756 3.244 23 H -0.193 1.193 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.077 4.077 27 C -0.136 4.136 28 C 0.048 3.952 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.041 0.959 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.063 0.937 45 H 0.225 0.775 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.043 0.957 49 H 0.103 0.897 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.739 1.987 11.511 26.458 hybrid contribution 0.953 0.904 0.352 1.360 sum -22.787 2.891 11.863 25.852 Atomic orbital electron populations 1.22836 0.80451 1.03359 1.00021 1.88032 1.19701 1.25238 1.95371 1.22332 0.92322 0.86882 1.02184 1.20153 0.88331 0.84345 0.77020 1.90779 1.73279 1.26519 1.47597 1.48090 1.06801 1.05524 1.73849 1.21786 0.97527 0.82807 0.99501 1.21908 0.96612 1.00038 0.98647 1.21491 0.94496 0.96664 1.02573 1.21500 0.95785 0.95021 0.98970 0.89649 1.22090 0.93503 0.89407 1.01023 1.61277 1.10691 1.10245 1.42096 1.21833 0.87953 1.01709 0.96883 1.19791 0.83303 0.85084 0.88813 1.90498 1.51375 1.53911 1.50142 1.41893 1.05162 1.54778 1.18583 1.19734 0.91844 1.35892 0.95078 0.87917 1.25257 0.95552 0.97950 0.99338 1.69625 1.01474 1.47705 1.35632 0.85814 0.78699 0.78455 0.81454 1.19258 1.20848 1.20788 1.22289 0.95888 0.98325 0.91243 1.21986 0.93008 0.93844 1.04747 1.21383 0.77661 0.98167 0.98012 0.91436 0.93818 0.89049 0.93904 0.90558 0.90400 0.91073 0.90186 0.90520 0.91222 0.91890 0.90801 0.95897 0.88114 0.89292 0.93693 0.77536 0.92003 0.90499 0.95680 0.89728 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -4.03 10.24 -55.14 -0.56 -4.60 16 3 C 0.04 0.37 4.78 36.01 0.17 0.54 16 4 C 0.51 6.29 7.72 -10.99 -0.08 6.20 16 5 O -0.51 -8.23 12.21 -14.35 -0.18 -8.41 16 6 N -0.61 -6.46 2.97 -165.34 -0.49 -6.95 16 7 C 0.11 0.74 6.34 -3.63 -0.02 0.72 16 8 C -0.13 -1.03 6.05 -26.57 -0.16 -1.19 16 9 C -0.11 -1.19 5.30 -26.77 -0.14 -1.33 16 10 C -0.09 -1.26 2.13 -90.74 -0.19 -1.45 16 11 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 12 C 0.07 1.11 4.54 -3.88 -0.02 1.09 16 13 N -0.52 -9.13 4.32 -236.11 -1.02 -10.15 16 14 C 0.05 0.89 5.46 -4.98 -0.03 0.86 16 15 C 0.44 10.66 7.32 -10.98 -0.08 10.58 16 16 O -0.58 -15.64 14.28 5.55 0.08 -15.56 16 17 N -0.57 -14.55 5.29 -10.96 -0.06 -14.61 16 18 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 19 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 20 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 21 N -0.90 -24.82 13.05 55.50 0.72 -24.10 16 22 Si 0.93 21.25 29.55 -169.99 -5.02 16.22 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 C 0.05 0.75 5.45 -3.80 -0.02 0.73 16 27 C -0.10 -1.42 3.84 -26.71 -0.10 -1.52 16 28 C 0.15 1.88 2.67 -67.79 -0.18 1.69 16 29 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.08 0.45 7.96 -51.93 -0.41 0.04 16 34 H 0.08 0.51 7.71 -51.93 -0.40 0.11 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.36 6.00 -51.93 -0.31 0.05 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 42 H 0.10 1.98 6.08 -51.93 -0.32 1.67 16 43 H 0.09 1.53 7.97 -51.93 -0.41 1.12 16 44 H 0.05 0.77 8.12 -51.93 -0.42 0.34 16 45 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 46 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 47 H 0.08 1.10 8.01 -51.93 -0.42 0.69 16 48 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 49 H 0.08 1.26 6.65 -51.93 -0.35 0.91 16 50 H 0.08 1.45 7.10 -51.93 -0.37 1.08 16 LS Contribution 387.66 15.07 5.84 5.84 Total: -1.00 -34.48 387.66 -8.99 -43.47 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -8.31 Total: 8.61 kcal Atomic # 6 Polarization: 10.21 SS G_CDS: 0.01 Total: 10.22 kcal Atomic # 7 Polarization: -54.96 SS G_CDS: -0.84 Total: -55.80 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.66 Total: -28.56 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -34.48 -8.99 -43.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690314730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.454 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds