Wall clock time and date at job start Sat Apr 11 2020 05:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42909 * 113.99677 * 2 1 4 4 C 1.50700 * 109.46652 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00173 * 0.02562 * 4 3 2 6 6 N 1.34776 * 119.99650 * 179.97438 * 4 3 2 7 7 C 1.47182 * 121.04228 * 0.02562 * 6 4 3 8 8 C 1.53075 * 109.29211 * 233.28391 * 7 6 4 9 9 C 1.53234 * 109.88046 * 306.63070 * 8 7 6 10 10 C 1.52688 * 109.00366 * 60.40335 * 9 8 7 11 11 H 1.08999 * 109.36961 * 56.74671 * 10 9 8 12 12 C 1.52712 * 111.23268 * 177.66748 * 10 9 8 13 13 N 1.47075 * 108.89201 * 180.45649 * 12 10 9 14 14 C 1.46896 * 110.99884 * 174.40948 * 13 12 10 15 15 C 1.50706 * 109.47493 * 293.62309 * 14 13 12 16 16 O 1.21287 * 119.99759 * 353.73926 * 15 14 13 17 17 N 1.34776 * 120.00039 * 173.73629 * 15 14 13 18 18 C 1.37093 * 119.99591 * 180.27369 * 17 15 14 19 19 H 1.07999 * 120.00636 * 359.72943 * 18 17 15 20 20 C 1.38956 * 119.99735 * 179.72541 * 18 17 15 21 21 N 1.31412 * 119.99936 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99885 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46980 * 0.02562 * 22 20 18 24 24 H 1.48496 * 109.46866 * 120.00242 * 22 20 18 25 25 H 1.48500 * 109.46890 * 239.99744 * 22 20 18 26 26 C 1.46708 * 111.82040 * 298.96487 * 13 12 10 27 27 C 1.53245 * 110.08748 * 60.35973 * 26 13 12 28 28 C 1.46606 * 121.04260 * 180.02562 * 6 4 3 29 29 H 1.09003 * 109.52269 * 244.21355 * 28 6 4 30 30 H 1.09001 * 109.47021 * 60.00131 * 1 2 3 31 31 H 1.08997 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47493 * 300.00415 * 1 2 3 33 33 H 1.08999 * 109.47213 * 59.99887 * 3 2 1 34 34 H 1.08994 * 109.47238 * 299.99773 * 3 2 1 35 35 H 1.08993 * 109.50100 * 113.34203 * 7 6 4 36 36 H 1.09000 * 109.52615 * 353.24592 * 7 6 4 37 37 H 1.08995 * 109.40192 * 186.50339 * 8 7 6 38 38 H 1.09003 * 109.39847 * 66.75266 * 8 7 6 39 39 H 1.09001 * 109.54797 * 300.54444 * 9 8 7 40 40 H 1.08999 * 109.62517 * 180.30615 * 9 8 7 41 41 H 1.09006 * 109.57120 * 60.63364 * 12 10 9 42 42 H 1.09003 * 109.57201 * 300.28071 * 12 10 9 43 43 H 1.08997 * 109.47123 * 173.62566 * 14 13 12 44 44 H 1.09001 * 109.47549 * 53.62211 * 14 13 12 45 45 H 0.96995 * 119.99906 * 0.02562 * 17 15 14 46 46 H 0.97006 * 119.99870 * 179.97438 * 21 20 18 47 47 H 1.08995 * 109.36755 * 180.54631 * 26 13 12 48 48 H 1.09003 * 109.36861 * 300.17177 * 26 13 12 49 49 H 1.09006 * 109.60633 * 181.71653 * 27 26 13 50 50 H 1.08997 * 109.74227 * 61.30871 * 27 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0340 0.0916 0.0006 6 7 4.2764 2.2969 0.0002 7 6 3.6676 3.6369 -0.0003 8 6 4.2449 4.4542 -1.1587 9 6 5.7756 4.4474 -1.0893 10 6 6.2717 3.0073 -1.1955 11 1 5.8957 2.5624 -2.1168 12 6 7.7976 2.9461 -1.1894 13 7 8.2184 1.5415 -1.3045 14 6 9.6777 1.4383 -1.4365 15 6 10.1076 2.0426 -2.7485 16 8 9.2737 2.4097 -3.5491 17 7 11.4185 2.1752 -3.0320 18 6 11.8094 2.7301 -4.2231 19 1 11.0670 3.0570 -4.9361 20 6 13.1609 2.8721 -4.5131 21 7 14.0643 2.4739 -3.6457 22 14 13.6936 3.6288 -6.1358 23 1 12.4928 3.9922 -6.9303 24 1 14.4998 4.8477 -5.8724 25 1 14.5116 2.6486 -6.8942 26 6 7.7336 0.7331 -0.1803 27 6 6.2020 0.7578 -0.1361 28 6 5.7397 2.2078 0.0003 29 1 6.1305 2.6321 0.9252 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.6885 1.8465 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8878 4.1369 0.9429 36 1 2.5881 3.5466 -0.1211 37 1 3.8840 5.4806 -1.0929 38 1 3.9234 4.0185 -2.1047 39 1 6.0996 4.8758 -0.1408 40 1 6.1821 5.0348 -1.9126 41 1 8.1761 3.3653 -0.2571 42 1 8.1892 3.5148 -2.0328 43 1 9.9720 0.3892 -1.4061 44 1 10.1556 1.9737 -0.6161 45 1 12.0853 1.8813 -2.3919 46 1 15.0078 2.5727 -3.8483 47 1 8.0753 -0.2949 -0.3005 48 1 8.1287 1.1368 0.7520 49 1 5.8514 0.1802 0.7193 50 1 5.8003 0.3308 -1.0550 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690314730.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:03 Heat of formation + Delta-G solvation = -120.453478 kcal Electronic energy + Delta-G solvation = -30793.962704 eV Core-core repulsion = 26627.662758 eV Total energy + Delta-G solvation = -4166.299946 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.89 seconds Orbital eigenvalues (eV) -41.92882 -40.43176 -39.41780 -38.26034 -37.56776 -35.91795 -34.26693 -33.75201 -33.20327 -31.18204 -29.99792 -28.68762 -26.97172 -26.72695 -25.82094 -24.31742 -23.97145 -21.76504 -21.23334 -20.93387 -20.19802 -19.85679 -18.18382 -17.68651 -17.59139 -17.27531 -16.75755 -16.61886 -16.43568 -16.32577 -16.03493 -15.65369 -15.52597 -15.42942 -15.18267 -14.98999 -14.47799 -14.16634 -13.91856 -13.88452 -13.76611 -13.56928 -13.48185 -13.11934 -13.09495 -12.95340 -12.71700 -12.41056 -12.38263 -12.30735 -12.18827 -12.11922 -11.92463 -11.79282 -11.58022 -11.45333 -11.18078 -10.74464 -10.40451 -10.08578 -9.99425 -9.56782 -9.15502 -8.46341 -5.94821 1.35924 1.40750 1.55196 1.55919 1.72887 2.05689 2.28021 2.73015 2.95535 3.20219 3.34235 3.52335 3.69198 3.78301 3.86915 4.03764 4.10318 4.12304 4.19431 4.23609 4.25758 4.31566 4.36690 4.42343 4.47691 4.51105 4.53630 4.58640 4.61394 4.67037 4.75649 4.78711 4.84584 4.88323 4.99420 5.02713 5.06411 5.16304 5.26087 5.34658 5.41117 5.45434 5.61319 5.90060 6.06922 6.11093 6.25660 6.43694 6.61494 7.13537 7.18719 7.57036 8.13233 8.71389 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.022342 B = 0.002304 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1252.969746 B =12149.500271 C =12571.850347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.409 6.409 3 C 0.047 3.953 4 C 0.503 3.497 5 O -0.560 6.560 6 N -0.605 5.605 7 C 0.102 3.898 8 C -0.129 4.129 9 C -0.113 4.113 10 C -0.084 4.084 11 H 0.047 0.953 12 C 0.071 3.929 13 N -0.543 5.543 14 C 0.059 3.941 15 C 0.443 3.557 16 O -0.613 6.613 17 N -0.575 5.575 18 C -0.329 4.329 19 H 0.078 0.922 20 C -0.015 4.015 21 N -0.921 5.921 22 Si 0.993 3.007 23 H -0.274 1.274 24 H -0.269 1.269 25 H -0.272 1.272 26 C 0.054 3.946 27 C -0.085 4.085 28 C 0.155 3.845 29 H 0.086 0.914 30 H 0.057 0.943 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.112 0.888 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.041 0.959 42 H 0.059 0.941 43 H 0.106 0.894 44 H 0.068 0.932 45 H 0.395 0.605 46 H 0.277 0.723 47 H 0.077 0.923 48 H 0.047 0.953 49 H 0.082 0.918 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.040 4.347 14.213 29.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.328 6.328 3 C -0.032 4.032 4 C 0.292 3.708 5 O -0.439 6.439 6 N -0.339 5.339 7 C -0.019 4.019 8 C -0.167 4.167 9 C -0.151 4.151 10 C -0.104 4.104 11 H 0.066 0.934 12 C -0.057 4.057 13 N -0.268 5.268 14 C -0.072 4.072 15 C 0.230 3.770 16 O -0.499 6.499 17 N -0.213 5.213 18 C -0.459 4.459 19 H 0.096 0.904 20 C -0.215 4.215 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.199 1.199 24 H -0.195 1.195 25 H -0.197 1.197 26 C -0.073 4.073 27 C -0.124 4.124 28 C 0.051 3.949 29 H 0.104 0.896 30 H 0.076 0.924 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.130 0.870 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.100 0.900 40 H 0.076 0.924 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.124 0.876 44 H 0.086 0.914 45 H 0.229 0.771 46 H 0.087 0.913 47 H 0.096 0.904 48 H 0.066 0.934 49 H 0.100 0.900 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -25.253 3.646 13.266 28.758 hybrid contribution 1.382 0.383 -0.197 1.447 sum -23.871 4.028 13.070 27.512 Atomic orbital electron populations 1.23024 0.78308 1.04081 1.01660 1.87976 1.22141 1.26882 1.95759 1.22438 0.89278 0.86656 1.04862 1.20956 0.90145 0.83819 0.75911 1.90752 1.74512 1.28516 1.50098 1.48193 1.05856 1.06975 1.72899 1.22134 0.99130 0.80529 1.00107 1.21902 0.94248 1.02004 0.98534 1.21506 0.96726 0.93949 1.02910 1.21373 0.93784 0.97344 0.97871 0.93445 1.22002 0.95394 0.88364 0.99968 1.61229 1.09965 1.11412 1.44193 1.21704 0.89060 1.02318 0.94107 1.20744 0.82359 0.83718 0.90203 1.90474 1.52238 1.55192 1.51990 1.41947 1.05932 1.55214 1.18206 1.19670 0.92132 1.38013 0.96077 0.90423 1.26051 0.95007 0.97797 1.02603 1.69686 1.01925 1.47689 1.36943 0.84867 0.78040 0.78111 0.77280 1.19855 1.19457 1.19698 1.22312 0.96040 0.97966 0.91022 1.21772 0.92592 0.95269 1.02719 1.21217 0.79421 0.96328 0.97912 0.89582 0.92442 0.88991 0.91869 0.87008 0.88047 0.88661 0.86932 0.87430 0.92654 0.90023 0.92363 0.94057 0.92223 0.87631 0.91382 0.77080 0.91346 0.90416 0.93439 0.89974 0.93431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -8.53 10.24 -129.94 -1.33 -9.86 16 3 C 0.05 0.69 4.78 71.24 0.34 1.03 16 4 C 0.50 11.82 7.72 87.66 0.68 12.49 16 5 O -0.56 -18.71 12.21 16.02 0.20 -18.52 16 6 N -0.61 -11.79 2.97 -795.41 -2.36 -14.15 16 7 C 0.10 1.02 6.34 86.27 0.55 1.57 16 8 C -0.13 -1.65 6.05 30.70 0.19 -1.46 16 9 C -0.11 -2.22 5.30 30.57 0.16 -2.06 16 10 C -0.08 -2.30 2.13 -10.87 -0.02 -2.32 16 11 H 0.05 1.64 8.14 -2.39 -0.02 1.63 16 12 C 0.07 2.36 4.54 86.17 0.39 2.75 16 13 N -0.54 -19.48 4.32 -900.91 -3.89 -23.37 16 14 C 0.06 2.22 5.46 85.56 0.47 2.68 16 15 C 0.44 21.98 7.32 87.66 0.64 22.63 16 16 O -0.61 -35.13 14.28 -3.05 -0.04 -35.18 16 17 N -0.58 -30.44 5.29 -306.98 -1.62 -32.06 16 18 C -0.33 -19.11 9.68 84.04 0.81 -18.29 16 19 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 20 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 21 N -0.92 -50.58 13.05 21.67 0.28 -50.29 16 22 Si 0.99 43.73 29.55 68.60 2.03 45.76 16 23 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 24 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 26 C 0.05 1.58 5.45 86.42 0.47 2.06 16 27 C -0.09 -2.53 3.84 30.61 0.12 -2.41 16 28 C 0.15 3.72 2.67 45.03 0.12 3.84 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.11 0.84 7.96 -2.39 -0.02 0.82 16 34 H 0.10 1.00 7.71 -2.39 -0.02 0.98 16 35 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.11 0.44 6.00 -2.39 -0.01 0.43 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 42 H 0.06 2.49 6.08 -2.39 -0.01 2.47 16 43 H 0.11 3.59 7.97 -2.39 -0.02 3.58 16 44 H 0.07 2.25 8.12 -2.39 -0.02 2.23 16 45 H 0.40 19.90 7.90 -92.71 -0.73 19.17 16 46 H 0.28 14.18 8.31 -92.70 -0.77 13.41 16 47 H 0.08 2.22 8.01 -2.39 -0.02 2.20 16 48 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 49 H 0.08 2.48 6.65 -2.38 -0.02 2.47 16 50 H 0.05 1.75 7.10 -2.39 -0.02 1.73 16 Total: -1.00 -80.36 387.66 0.09 -80.26 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.21 Total: 33.73 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 6.63 Total: 23.67 kcal Atomic # 7 Polarization: -112.28 SS G_CDS: -7.59 Total: -119.87 kcal Atomic # 8 Polarization: -62.37 SS G_CDS: -1.18 Total: -63.55 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Total: -80.36 0.09 -80.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690314730.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.189 kcal (2) G-P(sol) polarization free energy of solvation -80.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.89 seconds