Wall clock time and date at job start Sat Apr 11 2020 05:48:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99503 * 2 1 4 4 C 1.50704 * 109.46529 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00261 * 0.02562 * 4 3 2 6 6 N 1.34783 * 119.99416 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99672 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.47060 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47118 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99804 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99953 * 180.02562 * 9 8 7 12 12 C 1.48873 * 128.06545 * 179.97438 * 11 9 8 13 13 C 1.53703 * 102.56264 * 222.40754 * 12 11 9 14 14 H 1.08996 * 104.28991 * 79.68591 * 13 12 11 15 15 C 1.48449 * 114.54289 * 194.09858 * 13 12 11 16 16 C 1.50463 * 116.15163 * 97.79973 * 15 13 12 17 17 N 1.45549 * 110.39386 * 40.48049 * 16 15 13 18 18 C 1.36940 * 118.98008 * 131.19874 * 17 16 15 19 19 H 1.07998 * 120.00090 * 332.29166 * 18 17 16 20 20 C 1.38812 * 119.99679 * 152.29533 * 18 17 16 21 21 N 1.31624 * 120.00170 * 344.06538 * 20 18 17 22 22 Si 1.86798 * 119.99894 * 164.07178 * 20 18 17 23 23 H 1.48493 * 109.47535 * 59.99540 * 22 20 18 24 24 H 1.48498 * 109.47273 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46763 * 299.99303 * 22 20 18 26 26 C 1.44699 * 122.03489 * 311.22795 * 17 16 15 27 27 C 1.51335 * 106.30813 * 329.28916 * 13 12 11 28 28 H 1.09006 * 109.79251 * 125.43426 * 27 13 12 29 29 C 1.48237 * 128.06721 * 359.96947 * 11 9 8 30 30 H 1.09000 * 109.47104 * 60.00117 * 1 2 3 31 31 H 1.09000 * 109.46699 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47410 * 299.99605 * 1 2 3 33 33 H 1.09001 * 109.47304 * 60.00203 * 3 2 1 34 34 H 1.08993 * 109.47407 * 299.99566 * 3 2 1 35 35 H 0.96998 * 120.00621 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.47022 * 59.99993 * 7 6 4 37 37 H 1.09004 * 109.47219 * 300.00085 * 7 6 4 38 38 H 1.09001 * 109.47190 * 60.00119 * 8 7 6 39 39 H 1.09004 * 109.47192 * 300.00124 * 8 7 6 40 40 H 1.09004 * 110.79190 * 104.13646 * 12 11 9 41 41 H 1.09002 * 110.79031 * 340.67644 * 12 11 9 42 42 H 1.08996 * 108.27742 * 219.47472 * 15 13 12 43 43 H 1.08999 * 108.27289 * 336.34711 * 15 13 12 44 44 H 1.09005 * 109.17218 * 280.35160 * 16 15 13 45 45 H 1.08991 * 109.45053 * 160.79293 * 16 15 13 46 46 H 0.96992 * 120.00109 * 180.02562 * 21 20 18 47 47 H 1.09004 * 108.53775 * 280.60474 * 26 17 16 48 48 H 1.08999 * 108.53606 * 163.04868 * 26 17 16 49 49 H 1.08998 * 110.33341 * 23.02757 * 29 11 9 50 50 H 1.09006 * 110.41862 * 260.84906 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2764 2.2970 0.0013 7 6 5.7368 2.1813 0.0013 8 6 6.3591 3.5790 0.0014 9 6 7.8614 3.4601 0.0009 10 8 8.3830 2.3651 0.0009 11 7 8.6253 4.5705 0.0014 12 6 10.1112 4.6624 0.0015 13 6 10.3764 5.7882 1.0137 14 1 10.2800 5.3043 1.9856 15 6 11.7580 6.3304 0.9849 16 6 11.9574 7.5962 0.1963 17 7 10.8433 8.5081 0.4107 18 6 11.1065 9.8152 0.7230 19 1 12.0217 10.0745 1.2344 20 6 10.1967 10.8068 0.3824 21 7 9.2511 10.5579 -0.4987 22 14 10.3147 12.4945 1.1743 23 1 11.6356 13.0967 0.8618 24 1 9.2359 13.3665 0.6443 25 1 10.1667 12.3621 2.6460 26 6 9.4664 8.0760 0.3046 27 6 9.1900 6.7238 0.9293 28 1 8.7538 6.8571 1.9194 29 6 8.1818 5.9850 0.0019 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8592 3.1727 0.0017 36 1 6.0585 1.6409 -0.8889 37 1 6.0584 1.6399 0.8911 38 1 6.0374 4.1199 0.8915 39 1 6.0374 4.1200 -0.8885 40 1 10.4820 4.9351 -0.9866 41 1 10.5567 3.7263 0.3383 42 1 12.0725 6.5195 2.0113 43 1 12.4155 5.5686 0.5659 44 1 12.0226 7.3510 -0.8638 45 1 12.8826 8.0783 0.5116 46 1 8.6157 11.2508 -0.7370 47 1 9.1975 8.0316 -0.7508 48 1 8.8321 8.8180 0.7894 49 1 7.1709 6.0648 0.4016 50 1 8.2232 6.3968 -1.0065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691554893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:07 Heat of formation + Delta-G solvation = -82.238787 kcal Electronic energy + Delta-G solvation = -29474.300571 eV Core-core repulsion = 25309.657739 eV Total energy + Delta-G solvation = -4164.642832 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.35892 -39.94788 -38.49795 -37.80130 -35.67226 -35.32178 -33.15151 -31.71367 -31.15087 -30.59621 -29.10316 -27.48649 -26.37690 -25.46650 -24.66261 -23.08565 -22.09985 -21.45358 -21.09501 -19.17695 -18.02809 -17.60243 -17.37129 -16.81935 -16.77682 -16.40995 -16.19972 -15.70488 -15.52442 -15.22465 -14.85543 -14.80298 -14.57315 -14.10918 -13.77489 -13.61287 -13.37413 -13.17958 -13.06732 -12.80436 -12.56930 -12.40784 -12.24624 -12.05516 -11.91253 -11.74692 -11.64070 -11.12934 -11.05417 -10.76338 -10.67491 -10.26967 -10.26491 -10.21802 -10.14491 -9.98786 -9.80450 -9.64363 -9.50149 -9.40306 -8.63762 -8.48845 -6.71585 -5.85493 -3.29758 2.30783 2.36153 2.60464 3.02336 3.33172 3.38902 3.40438 3.66856 4.28183 4.42945 4.50766 4.54992 4.63404 4.67746 4.76857 4.82338 4.86722 4.91456 5.02538 5.07953 5.16812 5.22819 5.30080 5.43454 5.54887 5.61593 5.67013 5.72336 5.75005 5.80438 5.91797 5.98481 6.04376 6.10705 6.32164 6.35199 6.42070 6.50816 6.56847 6.77796 6.80616 6.92083 7.12405 7.30367 7.58912 7.62623 7.74731 7.90246 8.13326 8.41267 9.20121 9.84415 10.29876 11.21587 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.001975 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.902758 B =14174.447182 C =15591.734585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.512 3.488 5 O -0.515 6.515 6 N -0.731 5.731 7 C 0.137 3.863 8 C -0.149 4.149 9 C 0.538 3.462 10 O -0.547 6.547 11 N -0.624 5.624 12 C 0.114 3.886 13 C -0.076 4.076 14 H 0.045 0.955 15 C -0.115 4.115 16 C 0.153 3.847 17 N -0.587 5.587 18 C -0.261 4.261 19 H 0.065 0.935 20 C 0.005 3.995 21 N -0.904 5.904 22 Si 0.902 3.098 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.284 1.284 26 C 0.188 3.812 27 C -0.110 4.110 28 H 0.070 0.930 29 C 0.103 3.897 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.044 0.956 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.401 0.599 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.073 0.927 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.011 0.989 45 H 0.055 0.945 46 H 0.254 0.746 47 H 0.024 0.976 48 H 0.073 0.927 49 H 0.072 0.928 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.046 -12.421 0.939 18.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.037 4.037 4 C 0.296 3.704 5 O -0.389 6.389 6 N -0.386 5.386 7 C 0.014 3.986 8 C -0.190 4.190 9 C 0.326 3.674 10 O -0.425 6.425 11 N -0.357 5.357 12 C -0.008 4.008 13 C -0.096 4.096 14 H 0.063 0.937 15 C -0.155 4.155 16 C 0.027 3.973 17 N -0.309 5.309 18 C -0.391 4.391 19 H 0.083 0.917 20 C -0.193 4.193 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.210 1.210 26 C 0.061 3.939 27 C -0.131 4.131 28 H 0.088 0.912 29 C -0.020 4.020 30 H 0.063 0.937 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.235 0.765 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.091 0.909 41 H 0.098 0.902 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.029 0.971 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.042 0.958 48 H 0.092 0.908 49 H 0.091 0.909 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -13.488 -14.013 0.873 19.469 hybrid contribution -0.529 1.823 0.438 1.948 sum -14.017 -12.190 1.311 18.622 Atomic orbital electron populations 1.22855 0.80219 1.03438 1.00192 1.88028 1.19903 1.25127 1.95434 1.22237 0.91506 0.87140 1.02774 1.20242 0.88677 0.84553 0.76880 1.90769 1.74564 1.26442 1.47092 1.45863 1.07242 1.08815 1.76673 1.21044 0.77646 0.95677 1.04274 1.21770 0.93015 0.98853 1.05337 1.19814 0.88370 0.82898 0.76314 1.90734 1.74961 1.25836 1.51009 1.49221 1.08133 1.06306 1.72051 1.22538 0.79343 0.98873 1.00065 1.20066 0.95795 0.95135 0.98569 0.93662 1.20340 0.94422 0.99117 1.01607 1.20031 0.91918 0.89572 0.95807 1.43024 0.99909 1.06267 1.81653 1.19219 1.06033 0.82722 1.31096 0.91686 1.25047 0.99325 0.97744 0.97211 1.70047 1.19442 1.33486 1.31827 0.86374 0.77301 0.83945 0.79174 1.20833 1.21630 1.21039 1.19941 0.86563 0.89770 0.97598 1.21963 0.93994 0.98149 0.98975 0.91186 1.23144 0.98624 0.79121 1.01132 0.93717 0.89016 0.93717 0.90087 0.90066 0.76483 0.90329 0.90348 0.88097 0.88044 0.90852 0.90175 0.92545 0.92684 0.97093 0.92621 0.93590 0.95786 0.90843 0.90941 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.37 -3.67 10.24 -55.14 -0.56 -4.23 16 3 C 0.04 0.31 6.42 36.01 0.23 0.54 16 4 C 0.51 5.47 7.91 -10.98 -0.09 5.38 16 5 O -0.51 -8.29 16.50 -14.35 -0.24 -8.53 16 6 N -0.73 -5.88 5.56 -60.29 -0.33 -6.21 16 7 C 0.14 1.45 4.96 -4.04 -0.02 1.43 16 8 C -0.15 -1.37 4.83 -27.88 -0.13 -1.50 16 9 C 0.54 7.40 7.92 -10.98 -0.09 7.32 16 10 O -0.55 -9.53 16.27 5.55 0.09 -9.44 16 11 N -0.62 -8.68 3.31 -168.26 -0.56 -9.24 16 12 C 0.11 1.66 6.47 -2.36 -0.02 1.65 16 13 C -0.08 -1.18 2.50 -93.31 -0.23 -1.41 16 14 H 0.04 0.69 7.98 -51.93 -0.41 0.28 16 15 C -0.12 -1.85 5.50 -30.22 -0.17 -2.01 16 16 C 0.15 3.00 6.52 -5.82 -0.04 2.96 16 17 N -0.59 -13.68 3.06 -177.85 -0.54 -14.23 16 18 C -0.26 -6.79 9.41 -15.06 -0.14 -6.93 16 19 H 0.07 1.67 7.80 -52.49 -0.41 1.26 16 20 C 0.01 0.14 4.84 -17.43 -0.08 0.06 16 21 N -0.90 -24.58 11.12 55.49 0.62 -23.96 16 22 Si 0.90 20.70 29.58 -169.99 -5.03 15.67 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 24 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 26 C 0.19 4.01 4.49 -5.77 -0.03 3.99 16 27 C -0.11 -1.81 3.45 -90.82 -0.31 -2.13 16 28 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 29 C 0.10 1.39 6.41 -1.68 -0.01 1.38 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.40 1.72 8.47 -40.82 -0.35 1.37 16 36 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 37 H 0.08 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.10 0.74 7.96 -51.93 -0.41 0.32 16 39 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.17 7.89 -51.93 -0.41 0.76 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.76 7.83 -51.93 -0.41 0.35 16 44 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 1.07 7.80 -51.93 -0.40 0.67 16 46 H 0.25 6.72 8.31 -40.82 -0.34 6.38 16 47 H 0.02 0.56 6.76 -51.93 -0.35 0.21 16 48 H 0.07 1.77 6.35 -51.93 -0.33 1.44 16 49 H 0.07 0.79 7.36 -51.93 -0.38 0.41 16 50 H 0.08 1.18 7.05 -51.93 -0.37 0.81 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -34.85 398.77 -9.00 -43.85 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.44 Total: -1.67 kcal Atomic # 6 Polarization: 12.00 SS G_CDS: -0.01 Total: 11.98 kcal Atomic # 7 Polarization: -52.83 SS G_CDS: -0.82 Total: -53.65 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -0.71 Total: -22.19 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.85 -9.00 -43.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691554893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.392 kcal (2) G-P(sol) polarization free energy of solvation -34.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds