Wall clock time and date at job start Sat Apr 11 2020 05:48:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99503 * 2 1 4 4 C 1.50704 * 109.46529 * 179.97438 * 3 2 1 5 5 O 1.21277 * 120.00261 * 0.02562 * 4 3 2 6 6 N 1.34783 * 119.99416 * 180.02562 * 4 3 2 7 7 C 1.46503 * 119.99672 * 180.02562 * 6 4 3 8 8 C 1.52995 * 109.47060 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.47118 * 180.02562 * 8 7 6 10 10 O 1.21285 * 119.99804 * 359.97438 * 9 8 7 11 11 N 1.34777 * 119.99953 * 180.02562 * 9 8 7 12 12 C 1.48873 * 128.06545 * 179.97438 * 11 9 8 13 13 C 1.53703 * 102.56264 * 222.40754 * 12 11 9 14 14 H 1.08996 * 104.28991 * 79.68591 * 13 12 11 15 15 C 1.48449 * 114.54289 * 194.09858 * 13 12 11 16 16 C 1.50463 * 116.15163 * 97.79973 * 15 13 12 17 17 N 1.45549 * 110.39386 * 40.48049 * 16 15 13 18 18 C 1.36940 * 118.98008 * 131.19874 * 17 16 15 19 19 H 1.07998 * 120.00090 * 332.29166 * 18 17 16 20 20 C 1.38812 * 119.99679 * 152.29533 * 18 17 16 21 21 N 1.31624 * 120.00170 * 344.06538 * 20 18 17 22 22 Si 1.86798 * 119.99894 * 164.07178 * 20 18 17 23 23 H 1.48493 * 109.47535 * 59.99540 * 22 20 18 24 24 H 1.48498 * 109.47273 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46763 * 299.99303 * 22 20 18 26 26 C 1.44699 * 122.03489 * 311.22795 * 17 16 15 27 27 C 1.51335 * 106.30813 * 329.28916 * 13 12 11 28 28 H 1.09006 * 109.79251 * 125.43426 * 27 13 12 29 29 C 1.48237 * 128.06721 * 359.96947 * 11 9 8 30 30 H 1.09000 * 109.47104 * 60.00117 * 1 2 3 31 31 H 1.09000 * 109.46699 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47410 * 299.99605 * 1 2 3 33 33 H 1.09001 * 109.47304 * 60.00203 * 3 2 1 34 34 H 1.08993 * 109.47407 * 299.99566 * 3 2 1 35 35 H 0.96998 * 120.00621 * 0.02562 * 6 4 3 36 36 H 1.09001 * 109.47022 * 59.99993 * 7 6 4 37 37 H 1.09004 * 109.47219 * 300.00085 * 7 6 4 38 38 H 1.09001 * 109.47190 * 60.00119 * 8 7 6 39 39 H 1.09004 * 109.47192 * 300.00124 * 8 7 6 40 40 H 1.09004 * 110.79190 * 104.13646 * 12 11 9 41 41 H 1.09002 * 110.79031 * 340.67644 * 12 11 9 42 42 H 1.08996 * 108.27742 * 219.47472 * 15 13 12 43 43 H 1.08999 * 108.27289 * 336.34711 * 15 13 12 44 44 H 1.09005 * 109.17218 * 280.35160 * 16 15 13 45 45 H 1.08991 * 109.45053 * 160.79293 * 16 15 13 46 46 H 0.96992 * 120.00109 * 180.02562 * 21 20 18 47 47 H 1.09004 * 108.53775 * 280.60474 * 26 17 16 48 48 H 1.08999 * 108.53606 * 163.04868 * 26 17 16 49 49 H 1.08998 * 110.33341 * 23.02757 * 29 11 9 50 50 H 1.09006 * 110.41862 * 260.84906 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2764 2.2970 0.0013 7 6 5.7368 2.1813 0.0013 8 6 6.3591 3.5790 0.0014 9 6 7.8614 3.4601 0.0009 10 8 8.3830 2.3651 0.0009 11 7 8.6253 4.5705 0.0014 12 6 10.1112 4.6624 0.0015 13 6 10.3764 5.7882 1.0137 14 1 10.2800 5.3043 1.9856 15 6 11.7580 6.3304 0.9849 16 6 11.9574 7.5962 0.1963 17 7 10.8433 8.5081 0.4107 18 6 11.1065 9.8152 0.7230 19 1 12.0217 10.0745 1.2344 20 6 10.1967 10.8068 0.3824 21 7 9.2511 10.5579 -0.4987 22 14 10.3147 12.4945 1.1743 23 1 11.6356 13.0967 0.8618 24 1 9.2359 13.3665 0.6443 25 1 10.1667 12.3621 2.6460 26 6 9.4664 8.0760 0.3046 27 6 9.1900 6.7238 0.9293 28 1 8.7538 6.8571 1.9194 29 6 8.1818 5.9850 0.0019 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.6885 1.8464 0.8900 34 1 1.6886 1.8464 -0.8899 35 1 3.8592 3.1727 0.0017 36 1 6.0585 1.6409 -0.8889 37 1 6.0584 1.6399 0.8911 38 1 6.0374 4.1199 0.8915 39 1 6.0374 4.1200 -0.8885 40 1 10.4820 4.9351 -0.9866 41 1 10.5567 3.7263 0.3383 42 1 12.0725 6.5195 2.0113 43 1 12.4155 5.5686 0.5659 44 1 12.0226 7.3510 -0.8638 45 1 12.8826 8.0783 0.5116 46 1 8.6157 11.2508 -0.7370 47 1 9.1975 8.0316 -0.7508 48 1 8.8321 8.8180 0.7894 49 1 7.1709 6.0648 0.4016 50 1 8.2232 6.3968 -1.0065 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691554893.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:06 Heat of formation + Delta-G solvation = -107.231140 kcal Electronic energy + Delta-G solvation = -29475.384321 eV Core-core repulsion = 25309.657739 eV Total energy + Delta-G solvation = -4165.726582 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.48100 -40.83631 -39.74017 -38.43451 -37.17347 -36.25231 -34.69981 -32.79843 -32.61240 -32.00152 -29.77659 -28.77211 -27.08231 -26.84599 -25.99591 -24.16217 -23.45412 -22.97311 -21.89352 -20.25168 -19.57304 -18.39191 -18.28608 -18.05311 -17.59219 -17.48093 -17.26661 -16.75816 -16.66135 -16.41148 -16.09717 -15.79756 -15.53526 -15.32517 -15.22704 -14.94594 -14.57697 -14.44638 -14.06127 -13.99890 -13.72721 -13.58897 -13.18139 -13.14047 -12.93504 -12.72297 -12.63548 -12.51656 -12.39836 -12.37327 -12.34398 -11.96346 -11.83074 -11.41837 -11.17990 -11.09230 -11.04954 -10.86546 -10.75381 -10.42177 -10.22239 -9.80003 -8.60090 -7.82356 -5.29334 1.50565 1.51857 1.52525 1.54926 1.58438 1.59767 2.07967 2.54759 3.11683 3.29476 3.45354 3.55475 3.65767 3.79408 3.81291 3.93176 3.96136 4.01983 4.18976 4.22473 4.30292 4.37667 4.45153 4.51943 4.53471 4.56855 4.59646 4.67854 4.74923 4.79853 4.82813 4.87998 4.89272 4.94720 4.99647 5.02917 5.24130 5.29427 5.32046 5.40497 5.46899 5.61413 5.72671 5.86815 6.05107 6.45302 6.50012 6.55932 7.05016 7.20394 7.25267 8.01942 8.37904 9.21547 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.016987 B = 0.001975 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.902758 B =14174.447182 C =15591.734585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.047 3.953 4 C 0.504 3.496 5 O -0.581 6.581 6 N -0.710 5.710 7 C 0.143 3.857 8 C -0.135 4.135 9 C 0.534 3.466 10 O -0.589 6.589 11 N -0.622 5.622 12 C 0.115 3.885 13 C -0.075 4.075 14 H 0.053 0.947 15 C -0.108 4.108 16 C 0.150 3.850 17 N -0.605 5.605 18 C -0.274 4.274 19 H 0.063 0.937 20 C -0.042 4.042 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.280 1.280 24 H -0.293 1.293 25 H -0.280 1.280 26 C 0.202 3.798 27 C -0.107 4.107 28 H 0.077 0.923 29 C 0.113 3.887 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.061 0.939 33 H 0.114 0.886 34 H 0.114 0.886 35 H 0.424 0.576 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.070 0.930 41 H 0.080 0.920 42 H 0.058 0.942 43 H 0.080 0.920 44 H 0.006 0.994 45 H 0.053 0.947 46 H 0.251 0.749 47 H 0.000 1.000 48 H 0.041 0.959 49 H 0.109 0.891 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.749 -11.771 1.635 19.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.033 4.033 4 C 0.291 3.709 5 O -0.460 6.460 6 N -0.365 5.365 7 C 0.019 3.981 8 C -0.175 4.175 9 C 0.324 3.676 10 O -0.470 6.470 11 N -0.355 5.355 12 C -0.007 4.007 13 C -0.095 4.095 14 H 0.072 0.928 15 C -0.148 4.148 16 C 0.024 3.976 17 N -0.328 5.328 18 C -0.404 4.404 19 H 0.080 0.920 20 C -0.238 4.238 21 N -0.574 5.574 22 Si 0.790 3.210 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.206 1.206 26 C 0.076 3.924 27 C -0.128 4.128 28 H 0.095 0.905 29 C -0.009 4.009 30 H 0.079 0.921 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.262 0.738 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.089 0.911 41 H 0.098 0.902 42 H 0.077 0.923 43 H 0.099 0.901 44 H 0.023 0.977 45 H 0.071 0.929 46 H 0.060 0.940 47 H 0.018 0.982 48 H 0.059 0.941 49 H 0.127 0.873 50 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -15.206 -13.314 1.576 20.272 hybrid contribution 0.062 1.631 0.192 1.644 sum -15.144 -11.683 1.769 19.208 Atomic orbital electron populations 1.23031 0.78187 1.04088 1.01776 1.87970 1.22237 1.27052 1.95840 1.22402 0.88337 0.86741 1.05778 1.21087 0.90521 0.83909 0.75346 1.90740 1.75964 1.28972 1.50302 1.45636 1.06067 1.09581 1.75233 1.20770 0.79194 0.96241 1.01931 1.21744 0.89263 0.98268 1.08177 1.20594 0.90100 0.81946 0.74967 1.90725 1.76099 1.27377 1.52808 1.49254 1.07809 1.06555 1.71875 1.22463 0.80267 0.98400 0.99613 1.20034 0.95118 0.95027 0.99309 0.92847 1.20235 0.95507 0.97849 1.01167 1.20158 0.90814 0.90545 0.96081 1.43320 1.01484 1.06166 1.81804 1.19520 1.05961 0.84272 1.30687 0.91953 1.25710 0.99400 1.00816 0.97880 1.70183 1.20072 1.34166 1.32987 0.85436 0.77017 0.80179 0.78341 1.20561 1.21894 1.20570 1.19699 0.85132 0.91484 0.96121 1.21802 0.95554 0.95897 0.99522 0.90503 1.23010 0.99502 0.78241 1.00182 0.92077 0.89042 0.92063 0.86822 0.86829 0.73762 0.92903 0.92847 0.84970 0.85097 0.91132 0.90172 0.92320 0.90100 0.97658 0.92864 0.94020 0.98215 0.94092 0.87313 0.90742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.47 16 2 O -0.41 -7.76 10.24 -129.94 -1.33 -9.09 16 3 C 0.05 0.54 6.42 71.24 0.46 1.00 16 4 C 0.50 10.26 7.91 87.66 0.69 10.96 16 5 O -0.58 -19.33 16.50 16.02 0.26 -19.06 16 6 N -0.71 -9.85 5.56 -463.04 -2.57 -12.42 16 7 C 0.14 2.88 4.96 86.38 0.43 3.31 16 8 C -0.13 -2.05 4.83 29.85 0.14 -1.90 16 9 C 0.53 13.70 7.92 87.66 0.69 14.39 16 10 O -0.59 -20.33 16.27 -3.05 -0.05 -20.38 16 11 N -0.62 -15.97 3.31 -804.63 -2.67 -18.64 16 12 C 0.12 3.18 6.47 86.16 0.56 3.74 16 13 C -0.08 -2.20 2.50 -12.54 -0.03 -2.23 16 14 H 0.05 1.51 7.98 -2.39 -0.02 1.49 16 15 C -0.11 -3.31 5.50 28.34 0.16 -3.15 16 16 C 0.15 5.81 6.52 85.74 0.56 6.37 16 17 N -0.61 -28.39 3.06 -716.58 -2.19 -30.58 16 18 C -0.27 -14.37 9.41 84.03 0.79 -13.58 16 19 H 0.06 3.22 7.80 -2.91 -0.02 3.20 16 20 C -0.04 -2.22 4.84 84.86 0.41 -1.81 16 21 N -0.93 -51.20 11.12 21.65 0.24 -50.96 16 22 Si 0.96 42.68 29.58 68.60 2.03 44.71 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 25 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 26 C 0.20 8.65 4.49 86.22 0.39 9.04 16 27 C -0.11 -3.37 3.45 -10.92 -0.04 -3.41 16 28 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 29 C 0.11 2.78 6.41 86.96 0.56 3.33 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.77 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 33 H 0.11 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.11 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.42 1.94 8.47 -92.71 -0.79 1.15 16 36 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 37 H 0.05 1.36 8.10 -2.38 -0.02 1.34 16 38 H 0.13 1.28 7.96 -2.39 -0.02 1.26 16 39 H 0.13 1.31 8.14 -2.38 -0.02 1.30 16 40 H 0.07 1.99 8.14 -2.38 -0.02 1.97 16 41 H 0.08 2.23 7.89 -2.39 -0.02 2.21 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.08 2.06 7.83 -2.39 -0.02 2.04 16 44 H 0.01 0.22 8.14 -2.38 -0.02 0.20 16 45 H 0.05 2.05 7.80 -2.39 -0.02 2.03 16 46 H 0.25 13.42 8.31 -92.71 -0.77 12.65 16 47 H 0.00 0.00 6.76 -2.39 -0.02 -0.01 16 48 H 0.04 2.00 6.35 -2.39 -0.02 1.98 16 49 H 0.11 1.90 7.36 -2.39 -0.02 1.89 16 50 H 0.07 2.00 7.05 -2.38 -0.02 1.99 16 Total: -1.00 -80.38 398.77 0.89 -79.49 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.15 Total: 9.39 kcal Atomic # 6 Polarization: 20.52 SS G_CDS: 7.01 Total: 27.54 kcal Atomic # 7 Polarization: -105.41 SS G_CDS: -7.19 Total: -112.60 kcal Atomic # 8 Polarization: -47.41 SS G_CDS: -1.12 Total: -48.53 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -80.38 0.89 -79.49 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691554893.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.740 kcal (2) G-P(sol) polarization free energy of solvation -80.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds