Wall clock time and date at job start Sat Apr 11 2020 05:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47091 * 2 1 4 4 N 1.28513 * 124.44152 * 269.97828 * 3 2 1 5 5 C 1.31128 * 109.06116 * 179.73421 * 4 3 2 6 6 C 1.50701 * 127.11771 * 180.26866 * 5 4 3 7 7 C 1.40927 * 105.77241 * 0.42706 * 5 4 3 8 8 C 1.47802 * 127.23719 * 179.83870 * 7 5 4 9 9 O 1.21563 * 120.00109 * 354.38964 * 8 7 5 10 10 N 1.34778 * 120.00358 * 174.66980 * 8 7 5 11 11 C 1.46497 * 119.99542 * 354.17628 * 10 8 7 12 12 C 1.46499 * 120.00422 * 174.17609 * 10 8 7 13 13 C 1.53000 * 109.47215 * 89.99813 * 12 10 8 14 14 O 1.42899 * 109.46835 * 65.00011 * 13 12 10 15 15 C 1.42901 * 113.99722 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47063 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47387 * 64.99936 * 16 15 14 18 18 C 1.46510 * 120.00089 * 270.00175 * 17 16 15 19 19 C 1.36938 * 120.00006 * 89.99877 * 17 16 15 20 20 H 1.07994 * 119.99766 * 22.51767 * 19 17 16 21 21 C 1.38815 * 119.99511 * 202.51359 * 19 17 16 22 22 N 1.31615 * 120.00816 * 12.26513 * 21 19 17 23 23 Si 1.86807 * 119.99419 * 192.25991 * 21 19 17 24 24 H 1.48498 * 109.47168 * 60.00539 * 23 21 19 25 25 H 1.48504 * 109.47027 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47370 * 299.99900 * 23 21 19 27 27 N 1.28582 * 124.44463 * 90.00006 * 3 2 1 28 28 H 1.09006 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47013 * 300.00015 * 1 2 3 30 30 H 1.08993 * 109.47065 * 60.00667 * 1 2 3 31 31 H 1.09000 * 109.47460 * 239.99943 * 2 1 3 32 32 H 1.09007 * 109.47289 * 119.99824 * 2 1 3 33 33 H 1.09005 * 109.46926 * 270.19398 * 6 5 4 34 34 H 1.09001 * 109.46937 * 30.19052 * 6 5 4 35 35 H 1.09000 * 109.47657 * 150.19688 * 6 5 4 36 36 H 1.09000 * 109.47641 * 85.62785 * 11 10 8 37 37 H 1.09001 * 109.47417 * 205.63021 * 11 10 8 38 38 H 1.09006 * 109.47260 * 325.63071 * 11 10 8 39 39 H 1.08999 * 109.46877 * 210.00049 * 12 10 8 40 40 H 1.08997 * 109.46657 * 329.99814 * 12 10 8 41 41 H 1.08993 * 109.47235 * 185.00408 * 13 12 10 42 42 H 1.09006 * 109.46845 * 305.00572 * 13 12 10 43 43 H 1.09002 * 109.47112 * 299.99893 * 15 14 13 44 44 H 1.08996 * 109.47278 * 60.00295 * 15 14 13 45 45 H 1.08998 * 109.47419 * 185.00153 * 16 15 14 46 46 H 1.09008 * 109.47357 * 304.99706 * 16 15 14 47 47 H 1.09001 * 109.47081 * 94.65812 * 18 17 16 48 48 H 1.08999 * 109.46878 * 214.66127 * 18 17 16 49 49 H 1.09000 * 109.47095 * 334.66292 * 18 17 16 50 50 H 0.96997 * 120.00788 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 -1.0599 5 6 2.6769 3.2603 -0.7121 6 6 3.0684 4.3900 -1.6295 7 6 2.6856 3.2675 0.6971 8 6 3.0800 4.3826 1.5834 9 8 3.5437 5.4013 1.1090 10 7 2.9309 4.2680 2.9180 11 6 2.2616 3.0932 3.4819 12 6 3.4380 5.3181 3.8047 13 6 2.3465 6.3662 4.0303 14 8 1.2539 5.7722 4.7341 15 6 0.1744 6.6709 4.9967 16 6 -0.9328 5.9315 5.7507 17 7 -0.4385 5.5241 7.0681 18 6 0.2092 4.2208 7.2367 19 6 -0.5817 6.3615 8.1422 20 1 -1.3447 7.1258 8.1329 21 6 0.2538 6.2278 9.2426 22 7 1.3280 5.4713 9.1655 23 14 -0.1467 7.1219 10.8332 24 1 -1.4718 6.6746 11.3324 25 1 0.8938 6.8168 11.8480 26 1 -0.1798 8.5854 10.5836 27 7 2.2608 2.0669 1.0604 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.1327 4.3227 -1.8550 34 1 2.4959 4.3217 -2.5546 35 1 2.8597 5.3426 -1.1426 36 1 2.9857 2.2883 3.6086 37 1 1.8308 3.3500 4.4497 38 1 1.4702 2.7669 2.8070 39 1 3.7239 4.8796 4.7608 40 1 4.3071 5.7911 3.3476 41 1 2.7508 7.1914 4.6166 42 1 1.9980 6.7408 3.0678 43 1 0.5333 7.5026 5.6029 44 1 -0.2191 7.0514 4.0542 45 1 -1.7920 6.5909 5.8730 46 1 -1.2303 5.0483 5.1852 47 1 1.2894 4.3380 7.1500 48 1 -0.0349 3.8183 8.2198 49 1 -0.1450 3.5366 6.4657 50 1 1.9116 5.3776 9.9346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692309944.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:09 Heat of formation + Delta-G solvation = 62.939524 kcal Electronic energy + Delta-G solvation = -30620.273761 eV Core-core repulsion = 26494.219084 eV Total energy + Delta-G solvation = -4126.054677 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.83131 -39.66836 -37.43508 -35.70734 -35.32023 -34.93542 -33.14024 -31.77216 -31.39586 -29.89044 -28.23643 -27.89712 -26.51699 -25.69612 -25.08625 -23.22114 -22.89940 -22.13026 -21.21354 -20.27630 -19.57546 -17.54614 -17.15876 -16.84686 -16.62760 -16.22071 -15.69084 -15.34005 -15.10339 -14.89157 -14.54462 -14.17911 -13.86953 -13.77519 -13.53629 -13.32474 -13.07385 -12.95331 -12.82390 -12.75545 -12.53104 -12.30464 -12.19709 -11.94775 -11.85990 -11.62929 -11.41446 -11.32182 -10.91149 -10.88132 -10.77189 -10.69942 -10.47943 -10.36649 -10.05584 -10.03543 -9.89594 -9.75441 -9.38479 -8.86016 -8.52845 -8.45622 -6.64271 -5.63473 -3.08895 1.20319 1.76751 1.91251 2.99852 3.21226 3.41917 3.47343 3.48153 3.70319 4.33724 4.36574 4.38715 4.56344 4.56847 4.64500 4.71437 5.08574 5.20954 5.29474 5.38886 5.39606 5.48402 5.51907 5.55656 5.57646 5.59768 5.62455 5.75825 5.78953 5.82235 5.89813 6.03317 6.06494 6.15365 6.21101 6.25779 6.32140 6.45085 6.60845 6.62973 6.83102 6.95475 7.39436 7.51499 7.84548 7.92780 7.95342 7.98561 8.15722 8.48463 9.33211 9.97054 10.47591 11.40611 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.002587 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.317278 B =10821.688960 C =11647.758934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.134 3.866 3 N -0.145 5.145 4 N -0.295 5.295 5 C 0.059 3.941 6 C -0.066 4.066 7 C -0.043 4.043 8 C 0.603 3.397 9 O -0.534 6.534 10 N -0.587 5.587 11 C 0.085 3.915 12 C 0.123 3.877 13 C 0.048 3.952 14 O -0.367 6.367 15 C 0.045 3.955 16 C 0.154 3.846 17 N -0.596 5.596 18 C 0.176 3.824 19 C -0.256 4.256 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.903 5.903 23 Si 0.902 3.098 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 N -0.240 5.240 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.080 0.920 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.054 0.946 42 H 0.043 0.957 43 H 0.047 0.953 44 H 0.022 0.978 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.033 0.967 48 H 0.035 0.965 49 H -0.007 1.007 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.495 -10.022 -20.616 23.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.015 3.985 3 N -0.048 5.048 4 N -0.136 5.136 5 C -0.105 4.105 6 C -0.125 4.125 7 C -0.205 4.205 8 C 0.389 3.611 9 O -0.410 6.410 10 N -0.318 5.318 11 C -0.058 4.058 12 C 0.001 3.999 13 C -0.030 4.030 14 O -0.285 6.285 15 C -0.035 4.035 16 C 0.026 3.974 17 N -0.318 5.318 18 C 0.031 3.969 19 C -0.386 4.386 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.732 3.268 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.211 1.211 27 N -0.088 5.088 28 H 0.106 0.894 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.128 0.872 32 H 0.130 0.870 33 H 0.099 0.901 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.112 0.888 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.065 0.935 44 H 0.040 0.960 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.051 0.949 48 H 0.053 0.947 49 H 0.011 0.989 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 2.416 -11.043 -20.615 23.511 hybrid contribution 0.142 1.489 0.937 1.765 sum 2.559 -9.555 -19.678 22.024 Atomic orbital electron populations 1.22196 0.92810 1.04086 1.03945 1.22086 0.96290 0.74115 1.06016 1.48225 1.43771 1.13393 0.99370 1.73903 1.18980 1.05179 1.15549 1.23244 1.00837 0.93762 0.92668 1.20195 1.01885 0.93663 0.96720 1.22918 1.09620 0.93785 0.94202 1.16733 0.78495 0.84498 0.81416 1.90761 1.46350 1.28979 1.74948 1.47601 1.56803 1.22578 1.04851 1.22010 0.97032 0.85949 1.00780 1.21628 0.95733 0.88461 0.94121 1.22757 0.89108 0.95585 0.95582 1.87928 1.27558 1.36783 1.76278 1.23436 0.89435 0.94029 0.96576 1.20873 0.93037 0.96706 0.86795 1.43869 1.69022 1.16063 1.02895 1.20679 0.96580 0.83655 0.95975 1.19158 1.11753 1.13253 0.94388 0.91688 1.24997 0.95587 0.99727 0.99271 1.70072 1.13195 1.42223 1.29339 0.86390 0.77309 0.79430 0.83687 1.21198 1.21705 1.21111 1.74634 1.14551 1.04551 1.15054 0.89401 0.91066 0.91397 0.87248 0.87038 0.90146 0.90815 0.88770 0.92907 0.89206 0.90579 0.88880 0.88837 0.92803 0.93913 0.93473 0.96027 0.92549 0.93989 0.94886 0.94674 0.98871 0.93908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.94 10.24 37.16 0.38 -0.56 16 2 C 0.13 0.82 7.24 -4.04 -0.03 0.80 16 3 N -0.15 -1.58 3.94 -10.61 -0.04 -1.62 16 4 N -0.30 -3.58 12.00 33.92 0.41 -3.17 16 5 C 0.06 0.75 7.39 -81.88 -0.61 0.15 16 6 C -0.07 -0.67 9.96 36.01 0.36 -0.32 16 7 C -0.04 -0.60 6.80 -82.68 -0.56 -1.16 16 8 C 0.60 9.26 7.67 -12.35 -0.09 9.17 16 9 O -0.53 -8.94 14.91 5.31 0.08 -8.86 16 10 N -0.59 -8.73 2.84 -182.71 -0.52 -9.24 16 11 C 0.09 1.18 9.15 59.85 0.55 1.73 16 12 C 0.12 1.82 5.75 -4.04 -0.02 1.80 16 13 C 0.05 0.80 6.28 37.16 0.23 1.03 16 14 O -0.37 -7.21 8.80 -35.23 -0.31 -7.52 16 15 C 0.04 0.88 6.28 37.16 0.23 1.12 16 16 C 0.15 3.24 6.11 -4.04 -0.02 3.22 16 17 N -0.60 -15.22 2.89 -181.11 -0.52 -15.74 16 18 C 0.18 4.41 8.61 59.85 0.52 4.93 16 19 C -0.26 -7.09 9.67 -15.06 -0.15 -7.23 16 20 H 0.07 1.75 7.85 -52.49 -0.41 1.34 16 21 C 0.00 0.07 5.11 -17.43 -0.09 -0.02 16 22 N -0.90 -26.41 10.64 55.49 0.59 -25.81 16 23 Si 0.90 22.00 29.57 -169.99 -5.03 16.97 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 26 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 27 N -0.24 -3.05 8.94 33.42 0.30 -2.76 16 28 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.11 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.09 1.05 6.89 -51.93 -0.36 0.70 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.40 7.20 -51.93 -0.37 1.03 16 38 H 0.08 1.05 5.89 -51.93 -0.31 0.74 16 39 H 0.09 1.38 8.07 -51.93 -0.42 0.97 16 40 H 0.09 1.28 7.50 -51.93 -0.39 0.90 16 41 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 1.12 8.03 -51.93 -0.42 0.71 16 46 H 0.04 0.83 7.86 -51.92 -0.41 0.42 16 47 H 0.03 0.89 7.38 -51.93 -0.38 0.51 16 48 H 0.03 0.94 7.26 -51.93 -0.38 0.57 16 49 H -0.01 -0.16 7.84 -51.93 -0.41 -0.57 16 50 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 LS Contribution 409.93 15.07 6.18 6.18 Total: -1.00 -33.76 409.93 -6.63 -40.39 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -8.46 Total: -3.46 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 0.69 Total: 14.64 kcal Atomic # 7 Polarization: -58.56 SS G_CDS: 0.21 Total: -58.35 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.23 Total: -16.37 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.03 Total: 16.97 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.76 -6.63 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692309944.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.331 kcal (2) G-P(sol) polarization free energy of solvation -33.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds