Wall clock time and date at job start Sat Apr 11 2020 05:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.47091 * 2 1 4 4 N 1.28513 * 124.44152 * 269.97828 * 3 2 1 5 5 C 1.31128 * 109.06116 * 179.73421 * 4 3 2 6 6 C 1.50701 * 127.11771 * 180.26866 * 5 4 3 7 7 C 1.40927 * 105.77241 * 0.42706 * 5 4 3 8 8 C 1.47802 * 127.23719 * 179.83870 * 7 5 4 9 9 O 1.21563 * 120.00109 * 354.38964 * 8 7 5 10 10 N 1.34778 * 120.00358 * 174.66980 * 8 7 5 11 11 C 1.46497 * 119.99542 * 354.17628 * 10 8 7 12 12 C 1.46499 * 120.00422 * 174.17609 * 10 8 7 13 13 C 1.53000 * 109.47215 * 89.99813 * 12 10 8 14 14 O 1.42899 * 109.46835 * 65.00011 * 13 12 10 15 15 C 1.42901 * 113.99722 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47063 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47387 * 64.99936 * 16 15 14 18 18 C 1.46510 * 120.00089 * 270.00175 * 17 16 15 19 19 C 1.36938 * 120.00006 * 89.99877 * 17 16 15 20 20 H 1.07994 * 119.99766 * 22.51767 * 19 17 16 21 21 C 1.38815 * 119.99511 * 202.51359 * 19 17 16 22 22 N 1.31615 * 120.00816 * 12.26513 * 21 19 17 23 23 Si 1.86807 * 119.99419 * 192.25991 * 21 19 17 24 24 H 1.48498 * 109.47168 * 60.00539 * 23 21 19 25 25 H 1.48504 * 109.47027 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.47370 * 299.99900 * 23 21 19 27 27 N 1.28582 * 124.44463 * 90.00006 * 3 2 1 28 28 H 1.09006 * 109.46922 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47013 * 300.00015 * 1 2 3 30 30 H 1.08993 * 109.47065 * 60.00667 * 1 2 3 31 31 H 1.09000 * 109.47460 * 239.99943 * 2 1 3 32 32 H 1.09007 * 109.47289 * 119.99824 * 2 1 3 33 33 H 1.09005 * 109.46926 * 270.19398 * 6 5 4 34 34 H 1.09001 * 109.46937 * 30.19052 * 6 5 4 35 35 H 1.09000 * 109.47657 * 150.19688 * 6 5 4 36 36 H 1.09000 * 109.47641 * 85.62785 * 11 10 8 37 37 H 1.09001 * 109.47417 * 205.63021 * 11 10 8 38 38 H 1.09006 * 109.47260 * 325.63071 * 11 10 8 39 39 H 1.08999 * 109.46877 * 210.00049 * 12 10 8 40 40 H 1.08997 * 109.46657 * 329.99814 * 12 10 8 41 41 H 1.08993 * 109.47235 * 185.00408 * 13 12 10 42 42 H 1.09006 * 109.46845 * 305.00572 * 13 12 10 43 43 H 1.09002 * 109.47112 * 299.99893 * 15 14 13 44 44 H 1.08996 * 109.47278 * 60.00295 * 15 14 13 45 45 H 1.08998 * 109.47419 * 185.00153 * 16 15 14 46 46 H 1.09008 * 109.47357 * 304.99706 * 16 15 14 47 47 H 1.09001 * 109.47081 * 94.65812 * 18 17 16 48 48 H 1.08999 * 109.46878 * 214.66127 * 18 17 16 49 49 H 1.09000 * 109.47095 * 334.66292 * 18 17 16 50 50 H 0.96997 * 120.00788 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 7 2.2610 2.0664 -1.0599 5 6 2.6769 3.2603 -0.7121 6 6 3.0684 4.3900 -1.6295 7 6 2.6856 3.2675 0.6971 8 6 3.0800 4.3826 1.5834 9 8 3.5437 5.4013 1.1090 10 7 2.9309 4.2680 2.9180 11 6 2.2616 3.0932 3.4819 12 6 3.4380 5.3181 3.8047 13 6 2.3465 6.3662 4.0303 14 8 1.2539 5.7722 4.7341 15 6 0.1744 6.6709 4.9967 16 6 -0.9328 5.9315 5.7507 17 7 -0.4385 5.5241 7.0681 18 6 0.2092 4.2208 7.2367 19 6 -0.5817 6.3615 8.1422 20 1 -1.3447 7.1258 8.1329 21 6 0.2538 6.2278 9.2426 22 7 1.3280 5.4713 9.1655 23 14 -0.1467 7.1219 10.8332 24 1 -1.4718 6.6746 11.3324 25 1 0.8938 6.8168 11.8480 26 1 -0.1798 8.5854 10.5836 27 7 2.2608 2.0669 1.0604 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.1327 4.3227 -1.8550 34 1 2.4959 4.3217 -2.5546 35 1 2.8597 5.3426 -1.1426 36 1 2.9857 2.2883 3.6086 37 1 1.8308 3.3500 4.4497 38 1 1.4702 2.7669 2.8070 39 1 3.7239 4.8796 4.7608 40 1 4.3071 5.7911 3.3476 41 1 2.7508 7.1914 4.6166 42 1 1.9980 6.7408 3.0678 43 1 0.5333 7.5026 5.6029 44 1 -0.2191 7.0514 4.0542 45 1 -1.7920 6.5909 5.8730 46 1 -1.2303 5.0483 5.1852 47 1 1.2894 4.3380 7.1500 48 1 -0.0349 3.8183 8.2198 49 1 -0.1450 3.5366 6.4657 50 1 1.9116 5.3776 9.9346 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692309944.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:08 Heat of formation + Delta-G solvation = 41.311985 kcal Electronic energy + Delta-G solvation = -30621.211602 eV Core-core repulsion = 26494.219084 eV Total energy + Delta-G solvation = -4126.992518 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.74284 -40.85604 -38.95968 -37.25712 -36.48180 -36.05527 -34.10793 -33.41828 -32.46402 -31.26819 -29.66304 -28.96556 -27.78074 -27.62629 -26.07796 -24.79838 -24.10475 -23.14054 -22.12302 -22.07584 -20.69449 -18.76463 -18.40674 -18.19049 -17.77917 -17.41463 -17.15631 -16.90924 -16.48306 -16.25834 -15.51451 -15.33538 -15.24021 -15.17906 -14.88547 -14.53254 -14.34278 -14.08286 -13.93244 -13.79426 -13.59700 -13.40779 -13.26404 -13.03279 -13.01865 -12.94037 -12.65952 -12.60681 -12.56570 -12.47461 -12.31543 -12.27280 -12.00585 -11.83664 -11.77149 -11.67887 -11.32718 -11.21266 -10.58281 -10.37593 -10.28802 -9.70815 -8.70534 -7.75395 -5.22993 0.19440 0.82259 1.18739 1.48293 1.50238 1.56604 1.88837 2.08909 2.54594 2.79294 2.91850 3.36903 3.51088 3.75221 3.77915 3.92339 3.95740 4.10929 4.14464 4.24021 4.35682 4.40334 4.44620 4.53506 4.54354 4.59113 4.62507 4.65963 4.70696 4.71868 4.75444 4.80165 4.84784 4.95166 4.97623 4.99555 5.06591 5.16447 5.17568 5.28615 5.41605 5.43760 5.62176 5.69177 5.87982 6.22368 6.38332 6.46803 6.89789 7.11025 7.22254 7.94840 8.40143 9.27077 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.016739 B = 0.002587 C = 0.002403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.317278 B =10821.688960 C =11647.758934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.120 3.880 3 N -0.134 5.134 4 N -0.299 5.299 5 C 0.049 3.951 6 C -0.063 4.063 7 C -0.070 4.070 8 C 0.602 3.398 9 O -0.554 6.554 10 N -0.590 5.590 11 C 0.096 3.904 12 C 0.128 3.872 13 C 0.050 3.950 14 O -0.383 6.383 15 C 0.053 3.947 16 C 0.150 3.850 17 N -0.612 5.612 18 C 0.195 3.805 19 C -0.265 4.265 20 H 0.070 0.930 21 C -0.051 4.051 22 N -0.932 5.932 23 Si 0.965 3.035 24 H -0.279 1.279 25 H -0.296 1.296 26 H -0.278 1.278 27 N -0.242 5.242 28 H 0.117 0.883 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.133 0.867 32 H 0.130 0.870 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.022 0.978 44 H 0.051 0.949 45 H 0.069 0.931 46 H 0.058 0.942 47 H 0.007 0.993 48 H 0.007 0.993 49 H 0.020 0.980 50 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.764 -10.839 -21.836 24.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.003 3.997 3 N -0.038 5.038 4 N -0.141 5.141 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.231 4.231 8 C 0.389 3.611 9 O -0.431 6.431 10 N -0.321 5.321 11 C -0.047 4.047 12 C 0.005 3.995 13 C -0.028 4.028 14 O -0.302 6.302 15 C -0.026 4.026 16 C 0.024 3.976 17 N -0.335 5.335 18 C 0.050 3.950 19 C -0.395 4.395 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.578 5.578 23 Si 0.794 3.206 24 H -0.206 1.206 25 H -0.222 1.222 26 H -0.204 1.204 27 N -0.092 5.092 28 H 0.135 0.865 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.151 0.849 32 H 0.148 0.852 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.096 0.904 39 H 0.109 0.891 40 H 0.123 0.877 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.041 0.959 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.025 0.975 48 H 0.026 0.974 49 H 0.039 0.961 50 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 1.661 -11.851 -21.863 24.924 hybrid contribution 0.310 1.640 1.210 2.061 sum 1.971 -10.211 -20.653 23.123 Atomic orbital electron populations 1.22172 0.92155 1.05565 1.02511 1.22635 0.96797 0.72146 1.08139 1.48810 1.42045 1.14315 0.98672 1.73908 1.19186 1.05078 1.15897 1.23610 1.00680 0.94535 0.92561 1.20232 1.02787 0.92261 0.96878 1.22782 1.11600 0.94090 0.94622 1.16905 0.78066 0.84675 0.81482 1.90737 1.47284 1.29843 1.75276 1.47656 1.56825 1.22708 1.04893 1.21910 0.97271 0.85891 0.99592 1.21572 0.95419 0.88244 0.94234 1.22831 0.88707 0.96086 0.95132 1.87908 1.28252 1.37253 1.76763 1.23211 0.89155 0.92958 0.97310 1.21048 0.93609 0.97805 0.85141 1.44086 1.69072 1.16005 1.04304 1.20358 0.95083 0.84245 0.95283 1.19505 1.11538 1.13201 0.95273 0.91228 1.25740 0.95690 1.00975 1.02267 1.70244 1.14094 1.43795 1.29709 0.85382 0.76916 0.78517 0.79817 1.20558 1.22214 1.20374 1.74566 1.14489 1.04335 1.15803 0.86473 0.92783 0.92426 0.84900 0.85230 0.89164 0.88996 0.89992 0.91651 0.91085 0.90429 0.89132 0.87686 0.92983 0.93783 0.95935 0.93136 0.91310 0.92401 0.97457 0.97382 0.96142 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.47 10.24 71.98 0.74 -0.73 16 2 C 0.12 1.18 7.24 86.38 0.63 1.81 16 3 N -0.13 -2.70 3.94 -187.48 -0.74 -3.44 16 4 N -0.30 -6.80 12.00 -46.59 -0.56 -7.36 16 5 C 0.05 1.22 7.39 43.32 0.32 1.54 16 6 C -0.06 -1.23 9.96 71.24 0.71 -0.52 16 7 C -0.07 -1.94 6.80 42.24 0.29 -1.65 16 8 C 0.60 18.34 7.67 86.77 0.67 19.00 16 9 O -0.55 -18.48 14.91 -3.91 -0.06 -18.54 16 10 N -0.59 -17.37 2.84 -850.24 -2.41 -19.78 16 11 C 0.10 2.62 9.15 127.77 1.17 3.79 16 12 C 0.13 3.78 5.75 86.38 0.50 4.28 16 13 C 0.05 1.67 6.28 71.98 0.45 2.13 16 14 O -0.38 -14.92 8.80 -148.98 -1.31 -16.24 16 15 C 0.05 2.04 6.28 71.98 0.45 2.49 16 16 C 0.15 6.15 6.11 86.38 0.53 6.67 16 17 N -0.61 -31.05 2.89 -726.92 -2.10 -33.15 16 18 C 0.20 9.87 8.61 127.77 1.10 10.97 16 19 C -0.26 -14.62 9.67 84.03 0.81 -13.81 16 20 H 0.07 3.70 7.85 -2.91 -0.02 3.68 16 21 C -0.05 -2.90 5.11 84.86 0.43 -2.47 16 22 N -0.93 -55.41 10.64 21.65 0.23 -55.17 16 23 Si 0.97 45.38 29.57 68.60 2.03 47.41 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 26 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 27 N -0.24 -5.90 8.94 -48.17 -0.43 -6.33 16 28 H 0.12 0.36 8.14 -2.38 -0.02 0.34 16 29 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.13 0.84 8.14 -2.38 -0.02 0.82 16 33 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 34 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.08 1.81 6.89 -2.39 -0.02 1.80 16 36 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 2.22 7.20 -2.39 -0.02 2.20 16 38 H 0.08 2.09 5.89 -2.38 -0.01 2.08 16 39 H 0.09 2.72 8.07 -2.39 -0.02 2.70 16 40 H 0.11 2.86 7.50 -2.39 -0.02 2.84 16 41 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 45 H 0.07 2.62 8.03 -2.39 -0.02 2.60 16 46 H 0.06 2.18 7.86 -2.38 -0.02 2.16 16 47 H 0.01 0.40 7.38 -2.39 -0.02 0.38 16 48 H 0.01 0.41 7.26 -2.39 -0.02 0.39 16 49 H 0.02 0.89 7.84 -2.39 -0.02 0.87 16 50 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -72.16 409.93 4.36 -67.80 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: 0.92 Total: 11.31 kcal Atomic # 6 Polarization: 24.71 SS G_CDS: 8.79 Total: 33.49 kcal Atomic # 7 Polarization: -119.23 SS G_CDS: -6.01 Total: -125.24 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -1.37 Total: -34.77 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -72.16 4.36 -67.80 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692309944.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.114 kcal (2) G-P(sol) polarization free energy of solvation -72.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds