Wall clock time and date at job start Sat Apr 11 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99979 * 2 1 4 4 H 1.09003 * 109.47098 * 29.99622 * 3 2 1 5 5 C 1.50697 * 109.46850 * 269.99559 * 3 2 1 6 6 O 1.21280 * 120.00276 * 355.00373 * 5 3 2 7 7 N 1.34780 * 119.99752 * 174.99783 * 5 3 2 8 8 C 1.46505 * 119.99669 * 180.02562 * 7 5 3 9 9 C 1.53008 * 109.46865 * 180.02562 * 8 7 5 10 10 C 1.53930 * 113.73189 * 271.72813 * 9 8 7 11 11 N 1.47956 * 86.18164 * 221.92268 * 10 9 8 12 12 C 1.46899 * 111.00451 * 137.58594 * 11 10 9 13 13 C 1.50698 * 109.47313 * 70.63464 * 12 11 10 14 14 O 1.21293 * 119.99929 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00070 * 179.97438 * 13 12 11 16 16 C 1.37092 * 119.99987 * 180.02562 * 15 13 12 17 17 H 1.07997 * 120.00461 * 0.02562 * 16 15 13 18 18 C 1.38959 * 120.00011 * 180.02562 * 16 15 13 19 19 N 1.31404 * 120.00142 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99728 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47282 * 90.00089 * 20 18 16 22 22 H 1.48503 * 109.46968 * 210.00145 * 20 18 16 23 23 H 1.48500 * 109.47232 * 329.99829 * 20 18 16 24 24 C 1.47957 * 90.76128 * 24.69003 * 11 10 9 25 25 C 1.53005 * 109.47314 * 149.99762 * 3 2 1 26 26 C 1.53781 * 113.61319 * 37.49301 * 25 3 2 27 27 C 1.53773 * 87.08304 * 220.02164 * 26 25 3 28 28 C 1.53781 * 87.08285 * 25.43193 * 27 26 25 29 29 H 1.09002 * 109.47382 * 300.00227 * 1 2 3 30 30 H 1.09001 * 109.46938 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46926 * 60.00334 * 1 2 3 32 32 H 0.97004 * 120.00047 * 0.02562 * 7 5 3 33 33 H 1.08996 * 109.47417 * 299.99881 * 8 7 5 34 34 H 1.08991 * 109.46908 * 60.00565 * 8 7 5 35 35 H 1.08997 * 112.93798 * 43.43038 * 9 8 7 36 36 H 1.09000 * 113.76400 * 336.24127 * 10 9 8 37 37 H 1.09007 * 113.76258 * 107.60334 * 10 9 8 38 38 H 1.08997 * 109.47456 * 190.64097 * 12 11 10 39 39 H 1.09003 * 109.46461 * 310.63717 * 12 11 10 40 40 H 0.97002 * 119.99899 * 0.02562 * 15 13 12 41 41 H 0.96998 * 120.00030 * 180.02562 * 19 18 16 42 42 H 1.09010 * 113.75931 * 220.99504 * 24 11 10 43 43 H 1.09000 * 113.76232 * 89.63154 * 24 11 10 44 44 H 1.08992 * 112.85173 * 168.80351 * 25 3 2 45 45 H 1.09003 * 113.61392 * 334.57007 * 26 25 3 46 46 H 1.09005 * 113.61138 * 105.46904 * 26 25 3 47 47 H 1.09003 * 113.61678 * 270.88861 * 27 26 25 48 48 H 1.08999 * 113.69578 * 139.99244 * 27 26 25 49 49 H 1.08994 * 113.61856 * 220.01665 * 28 27 26 50 50 H 1.09005 * 113.61198 * 89.11451 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2146 1.7642 -1.4208 6 8 1.9792 1.0105 -2.3413 7 7 2.6589 3.0123 -1.6686 8 6 2.8571 3.4585 -3.0499 9 6 3.3631 4.9025 -3.0517 10 6 2.2382 5.9532 -3.0502 11 7 3.0580 6.6881 -4.0386 12 6 2.2225 7.2237 -5.1216 13 6 1.3783 8.3543 -4.5925 14 8 1.4644 8.6820 -3.4278 15 7 0.5282 9.0020 -5.4136 16 6 -0.2395 10.0309 -4.9324 17 1 -0.1628 10.3227 -3.8954 18 6 -1.1164 10.6984 -5.7789 19 7 -1.8518 11.6849 -5.3178 20 14 -1.2495 10.1932 -7.5723 21 1 -2.2967 9.1502 -7.7164 22 1 -1.6124 11.3758 -8.3940 23 1 0.0546 9.6522 -8.0324 24 6 3.7211 5.4317 -4.4522 25 6 3.3589 1.2633 0.7213 26 6 4.1598 -0.0223 0.4554 27 6 4.5528 0.0086 1.9417 28 6 3.2601 0.8050 2.1859 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 -0.8901 32 1 2.8475 3.6151 -0.9323 33 1 3.5904 2.8163 -3.5375 34 1 1.9111 3.4040 -3.5885 35 1 4.1353 5.0830 -2.3039 36 1 1.2932 5.5855 -3.4501 37 1 2.1249 6.4741 -2.0994 38 1 2.8608 7.5919 -5.9248 39 1 1.5749 6.4351 -5.5047 40 1 0.4595 8.7402 -6.3451 41 1 -2.4642 12.1505 -5.9086 42 1 4.7929 5.5359 -4.6216 43 1 3.2099 4.9114 -5.2622 44 1 3.9391 2.1763 0.5877 45 1 3.5382 -0.8761 0.1858 46 1 5.0019 0.1202 -0.2220 47 1 5.4606 0.5779 2.1416 48 1 4.5564 -0.9735 2.4144 49 1 3.3758 1.6152 2.9057 50 1 2.3925 0.1773 2.3894 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001692323751.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:11 Heat of formation + Delta-G solvation = -82.647141 kcal Electronic energy + Delta-G solvation = -29396.851192 eV Core-core repulsion = 25232.190652 eV Total energy + Delta-G solvation = -4164.660540 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.62519 -41.15020 -39.77506 -39.27211 -37.83504 -36.07459 -35.74463 -33.79147 -32.44204 -30.80884 -28.61114 -27.25243 -27.06599 -26.57476 -26.35235 -24.71319 -23.53496 -21.69411 -21.27732 -20.57047 -20.25797 -20.23528 -18.55787 -17.87342 -17.84877 -17.35383 -16.96421 -16.84820 -16.35911 -16.32122 -16.27713 -15.94094 -15.62308 -15.40127 -15.02622 -14.87400 -14.58898 -14.41092 -14.25412 -14.03821 -13.67203 -13.48126 -13.30830 -13.15049 -13.08680 -12.90737 -12.80683 -12.46159 -12.42438 -12.28728 -12.00343 -11.83041 -11.67653 -11.61048 -11.51533 -11.49083 -11.25999 -11.07773 -10.43285 -10.27793 -10.26745 -10.13322 -9.68981 -8.43462 -6.04212 1.28231 1.33092 1.42290 1.53258 1.92802 2.02118 2.20674 2.66325 2.77157 3.11700 3.13973 3.40040 3.51921 3.67602 3.73604 3.76352 3.94341 3.99899 4.06450 4.18118 4.22869 4.28151 4.30880 4.36782 4.42681 4.48734 4.50245 4.52509 4.61235 4.70083 4.77725 4.81169 4.85555 4.89552 4.93001 5.00318 5.13261 5.13959 5.21911 5.32923 5.37773 5.44084 5.51573 5.64988 5.89400 5.99739 6.01895 6.51646 6.57083 6.85758 7.19340 7.37054 7.93691 8.74074 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018424 B = 0.001929 C = 0.001881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1519.385047 B =14513.030979 C =14878.458769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.371 6.371 3 C 0.082 3.918 4 H 0.109 0.891 5 C 0.489 3.511 6 O -0.575 6.575 7 N -0.715 5.715 8 C 0.135 3.865 9 C -0.105 4.105 10 C 0.016 3.984 11 N -0.484 5.484 12 C 0.018 3.982 13 C 0.450 3.550 14 O -0.608 6.608 15 N -0.593 5.593 16 C -0.327 4.327 17 H 0.055 0.945 18 C -0.016 4.016 19 N -0.933 5.933 20 Si 0.964 3.036 21 H -0.258 1.258 22 H -0.274 1.274 23 H -0.232 1.232 24 C 0.016 3.984 25 C -0.108 4.108 26 C -0.136 4.136 27 C -0.137 4.137 28 C -0.124 4.124 29 H 0.064 0.936 30 H 0.099 0.901 31 H 0.028 0.972 32 H 0.415 0.585 33 H 0.076 0.924 34 H 0.054 0.946 35 H 0.121 0.879 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.119 0.881 39 H 0.084 0.916 40 H 0.389 0.611 41 H 0.279 0.721 42 H 0.111 0.889 43 H 0.088 0.912 44 H 0.123 0.877 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.068 0.932 49 H 0.084 0.916 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.441 -25.680 8.298 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.289 6.289 3 C 0.021 3.979 4 H 0.126 0.874 5 C 0.276 3.724 6 O -0.454 6.454 7 N -0.369 5.369 8 C 0.010 3.990 9 C -0.124 4.124 10 C -0.113 4.113 11 N -0.207 5.207 12 C -0.113 4.113 13 C 0.238 3.762 14 O -0.492 6.492 15 N -0.235 5.235 16 C -0.457 4.457 17 H 0.074 0.926 18 C -0.214 4.214 19 N -0.574 5.574 20 Si 0.784 3.216 21 H -0.182 1.182 22 H -0.199 1.199 23 H -0.155 1.155 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.174 4.174 27 C -0.174 4.174 28 C -0.161 4.161 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.047 0.953 32 H 0.252 0.748 33 H 0.094 0.906 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.137 0.863 39 H 0.102 0.898 40 H 0.224 0.776 41 H 0.089 0.911 42 H 0.130 0.870 43 H 0.106 0.894 44 H 0.141 0.859 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.087 0.913 49 H 0.103 0.897 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 12.665 -25.432 8.583 29.679 hybrid contribution -1.493 0.414 -1.104 1.903 sum 11.172 -25.018 7.479 28.401 Atomic orbital electron populations 1.22988 0.79845 1.04033 1.00294 1.87940 1.20907 1.25725 1.94288 1.22038 0.98362 0.86818 0.90718 0.87355 1.21863 0.76147 0.81592 0.92824 1.90687 1.51978 1.55112 1.47659 1.45985 1.67214 1.14103 1.09574 1.21319 1.00635 0.93936 0.83075 1.23142 0.98163 0.91446 0.99645 1.23867 0.95506 0.93850 0.98080 1.68408 1.20645 1.22438 1.09170 1.22461 0.96562 0.95941 0.96356 1.20867 0.82694 0.86187 0.86461 1.90534 1.69886 1.69342 1.19470 1.42066 1.37951 1.31864 1.11581 1.18989 1.18804 1.10630 0.97249 0.92641 1.26115 0.95059 0.95489 1.04775 1.69796 1.25726 1.23040 1.38829 0.85377 0.80651 0.79126 0.76459 1.18222 1.19927 1.15527 1.24090 1.02492 0.88548 0.96079 1.22836 0.92576 1.00360 0.96907 1.22812 0.99121 0.97821 0.97605 1.22796 0.98183 1.01039 0.95399 1.22869 0.98535 1.00310 0.94390 0.91761 0.88268 0.95319 0.74811 0.90598 0.92720 0.86065 0.92177 0.91251 0.86350 0.89796 0.77570 0.91130 0.87035 0.89413 0.85934 0.90734 0.92175 0.89066 0.91273 0.89730 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.81 113.37 1.23 1.60 16 2 O -0.37 -7.23 8.00 -129.99 -1.04 -8.27 16 3 C 0.08 1.29 2.52 29.85 0.08 1.37 16 4 H 0.11 1.24 7.79 -2.39 -0.02 1.22 16 5 C 0.49 10.31 7.12 87.66 0.62 10.93 16 6 O -0.58 -17.54 16.51 15.96 0.26 -17.28 16 7 N -0.71 -11.53 5.47 -463.05 -2.53 -14.06 16 8 C 0.13 2.35 5.53 86.38 0.48 2.82 16 9 C -0.10 -1.81 3.94 -10.15 -0.04 -1.85 16 10 C 0.02 0.43 6.31 86.40 0.55 0.97 16 11 N -0.48 -13.75 5.95 -912.46 -5.43 -19.18 16 12 C 0.02 0.56 5.31 85.56 0.45 1.01 16 13 C 0.45 20.36 7.59 87.66 0.67 21.03 16 14 O -0.61 -33.54 15.13 -3.07 -0.05 -33.58 16 15 N -0.59 -28.09 5.09 -306.99 -1.56 -29.65 16 16 C -0.33 -19.24 10.16 84.04 0.85 -18.38 16 17 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 18 C -0.02 -0.87 5.50 84.93 0.47 -0.41 16 19 N -0.93 -56.33 13.96 21.67 0.30 -56.03 16 20 Si 0.96 38.89 27.74 68.60 1.90 40.79 16 21 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 23 H -0.23 -7.89 6.52 99.48 0.65 -7.25 16 24 C 0.02 0.29 7.54 86.40 0.65 0.95 16 25 C -0.11 -1.29 3.55 -10.27 -0.04 -1.33 16 26 C -0.14 -2.01 7.48 31.12 0.23 -1.77 16 27 C -0.14 -1.44 8.08 31.12 0.25 -1.18 16 28 C -0.12 -1.22 7.54 31.12 0.23 -0.99 16 29 H 0.06 0.70 8.09 -2.39 -0.02 0.68 16 30 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.42 4.50 8.33 -92.71 -0.77 3.73 16 33 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.05 1.15 7.84 -2.39 -0.02 1.13 16 35 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.06 1.68 7.53 -2.39 -0.02 1.66 16 37 H 0.07 2.20 8.09 -2.38 -0.02 2.18 16 38 H 0.12 3.02 8.14 -2.39 -0.02 3.00 16 39 H 0.08 2.10 7.69 -2.39 -0.02 2.08 16 40 H 0.39 15.28 5.76 -92.71 -0.53 14.75 16 41 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 42 H 0.11 1.62 8.14 -2.38 -0.02 1.61 16 43 H 0.09 1.32 7.75 -2.39 -0.02 1.30 16 44 H 0.12 1.01 7.94 -2.39 -0.02 0.99 16 45 H 0.07 1.43 6.98 -2.39 -0.02 1.41 16 46 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 47 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 48 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 50 H 0.08 0.92 7.77 -2.38 -0.02 0.90 16 Total: -1.00 -84.45 406.21 -1.87 -86.32 By element: Atomic # 1 Polarization: 36.57 SS G_CDS: -0.41 Total: 36.16 kcal Atomic # 6 Polarization: 8.09 SS G_CDS: 6.68 Total: 14.77 kcal Atomic # 7 Polarization: -109.70 SS G_CDS: -9.22 Total: -118.92 kcal Atomic # 8 Polarization: -58.31 SS G_CDS: -0.82 Total: -59.13 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 1.90 Total: 40.79 kcal Total: -84.45 -1.87 -86.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692323751.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.677 kcal (2) G-P(sol) polarization free energy of solvation -84.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.324 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds