Wall clock time and date at job start Sat Apr 11 2020 05:48:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42901 * 113.99966 * 2 1 4 4 H 1.09001 * 109.47275 * 329.51358 * 3 2 1 5 5 C 1.50694 * 109.47322 * 89.52087 * 3 2 1 6 6 O 1.21278 * 120.00013 * 4.99549 * 5 3 2 7 7 N 1.34781 * 119.99928 * 185.00060 * 5 3 2 8 8 C 1.46502 * 119.99951 * 179.97438 * 7 5 3 9 9 C 1.52991 * 109.47322 * 179.97438 * 8 7 5 10 10 C 1.53930 * 113.73729 * 271.73187 * 9 8 7 11 11 N 1.47959 * 86.18041 * 221.91792 * 10 9 8 12 12 C 1.46906 * 111.00005 * 137.57933 * 11 10 9 13 13 C 1.50703 * 109.47062 * 70.64039 * 12 11 10 14 14 O 1.21292 * 119.99760 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00253 * 180.02562 * 13 12 11 16 16 C 1.37090 * 120.00292 * 180.02562 * 15 13 12 17 17 H 1.08005 * 120.00166 * 359.97438 * 16 15 13 18 18 C 1.38955 * 120.00304 * 179.97438 * 16 15 13 19 19 N 1.31415 * 119.99689 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00153 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46983 * 60.00245 * 20 18 16 22 22 H 1.48499 * 109.46911 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47374 * 299.99796 * 20 18 16 24 24 C 1.47962 * 90.76274 * 24.68775 * 11 10 9 25 25 C 1.53004 * 109.46987 * 209.52142 * 3 2 1 26 26 C 1.53780 * 113.61622 * 60.22469 * 25 3 2 27 27 C 1.53782 * 87.08172 * 219.93779 * 26 25 3 28 28 C 1.53784 * 87.17329 * 25.38823 * 27 26 25 29 29 H 1.08996 * 109.47103 * 304.78680 * 1 2 3 30 30 H 1.08999 * 109.46906 * 64.78070 * 1 2 3 31 31 H 1.08993 * 109.47095 * 184.77990 * 1 2 3 32 32 H 0.96996 * 120.00050 * 359.97438 * 7 5 3 33 33 H 1.09002 * 109.46953 * 300.00266 * 8 7 5 34 34 H 1.09008 * 109.46695 * 59.99677 * 8 7 5 35 35 H 1.09002 * 112.93878 * 43.43727 * 9 8 7 36 36 H 1.09006 * 113.76003 * 336.23336 * 10 9 8 37 37 H 1.08997 * 113.76207 * 107.60297 * 10 9 8 38 38 H 1.09000 * 109.47055 * 190.64151 * 12 11 10 39 39 H 1.08997 * 109.47320 * 310.64320 * 12 11 10 40 40 H 0.97006 * 119.99786 * 359.97438 * 15 13 12 41 41 H 0.97002 * 119.99932 * 180.02562 * 19 18 16 42 42 H 1.08997 * 113.75967 * 220.98711 * 24 11 10 43 43 H 1.09003 * 113.75494 * 89.62846 * 24 11 10 44 44 H 1.08999 * 112.85062 * 191.42328 * 25 3 2 45 45 H 1.08998 * 113.61331 * 105.38648 * 26 25 3 46 46 H 1.08997 * 113.61303 * 334.48522 * 26 25 3 47 47 H 1.08998 * 113.61563 * 139.98228 * 27 26 25 48 48 H 1.08999 * 113.61056 * 270.80295 * 27 26 25 49 49 H 1.09003 * 113.61053 * 89.15564 * 28 27 26 50 50 H 1.08994 * 113.61561 * 220.05850 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3490 1.9976 -0.5214 5 6 2.2037 1.7692 1.4207 6 8 1.9613 1.0187 2.3419 7 7 2.6462 3.0182 1.6675 8 6 2.8337 3.4693 3.0487 9 6 3.3397 4.9131 3.0495 10 6 4.8728 5.0324 2.9788 11 7 4.7371 6.1029 3.9911 12 6 5.7732 5.9835 5.0257 13 6 7.1128 6.3485 4.4397 14 8 7.1962 6.6755 3.2746 15 7 8.2182 6.3107 5.2098 16 6 9.4366 6.6432 4.6768 17 1 9.5109 6.9351 3.6396 18 6 10.5763 6.6047 5.4709 19 7 10.4859 6.2500 6.7331 20 14 12.2366 7.0571 4.7445 21 1 12.1942 8.4551 4.2455 22 1 13.2840 6.9358 5.7901 23 1 12.5517 6.1395 3.6202 24 6 3.4552 5.5284 4.4557 25 6 3.3644 1.2608 -0.7108 26 6 3.2762 0.8027 -2.1761 27 6 4.5667 0.0057 -1.9225 28 6 4.1654 -0.0254 -0.4383 29 1 -0.3633 0.5863 0.8440 30 1 -0.3633 0.4379 -0.9297 31 1 -0.3633 -1.0240 0.0856 32 1 2.8404 3.6184 0.9307 33 1 1.8836 3.4165 3.5803 34 1 3.5633 2.8286 3.5442 35 1 2.8153 5.5474 2.3348 36 1 5.3992 4.1494 3.3413 37 1 5.2420 5.3835 2.0153 38 1 5.5419 6.6570 5.8510 39 1 5.8044 4.9574 5.3920 40 1 8.1514 6.0488 6.1414 41 1 11.2814 6.2235 7.2876 42 1 2.6918 6.2757 4.6722 43 1 3.5670 4.7905 5.2501 44 1 3.9453 2.1727 -0.5726 45 1 3.3976 1.6130 -2.8950 46 1 2.4099 0.1755 -2.3861 47 1 4.5728 -0.9770 -2.3940 48 1 5.4762 0.5742 -2.1170 49 1 3.5425 -0.8795 -0.1723 50 1 5.0035 0.1172 0.2437 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692323752.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:16 Heat of formation + Delta-G solvation = -61.138298 kcal Electronic energy + Delta-G solvation = -29524.585400 eV Core-core repulsion = 25360.857554 eV Total energy + Delta-G solvation = -4163.727847 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.73233 -40.02632 -38.60316 -37.72720 -37.13724 -34.87555 -33.90080 -31.49424 -31.09089 -29.87593 -27.38775 -26.48244 -25.99545 -25.81729 -24.91724 -23.88306 -22.44149 -20.84960 -19.67923 -19.56652 -19.20961 -17.95719 -17.66066 -17.10564 -16.66871 -16.19504 -15.93150 -15.55353 -15.33625 -15.18614 -15.03934 -14.64378 -14.46113 -14.19024 -13.94575 -13.67759 -13.42616 -13.34077 -12.90489 -12.66029 -12.51980 -12.48254 -12.18709 -12.10736 -11.80908 -11.70915 -11.50052 -11.33683 -11.05976 -10.92266 -10.87115 -10.64269 -10.62911 -10.60627 -10.47197 -10.44780 -10.21743 -9.50361 -9.46014 -9.26783 -8.67095 -8.24160 -7.97346 -6.42369 -3.83334 2.37546 2.80242 3.19258 3.25091 3.29277 3.41864 3.87877 3.97602 4.12601 4.20597 4.33026 4.37238 4.41951 4.56927 4.61243 4.63678 4.80922 4.89552 4.93483 5.04595 5.09591 5.13191 5.22257 5.34348 5.34817 5.37788 5.40277 5.49996 5.53366 5.59517 5.60995 5.66638 5.72395 5.74090 5.82163 5.82696 5.93863 6.02248 6.15804 6.25098 6.26749 6.30999 6.60512 6.65242 7.18113 7.27455 7.54000 8.00815 8.04441 8.60373 9.16845 9.53147 10.04761 10.75306 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.013418 B = 0.002160 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2086.304197 B =12962.675762 C =14357.527316 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.084 3.916 4 H 0.087 0.913 5 C 0.490 3.510 6 O -0.527 6.527 7 N -0.725 5.725 8 C 0.128 3.872 9 C -0.134 4.134 10 C 0.027 3.973 11 N -0.453 5.453 12 C 0.010 3.990 13 C 0.443 3.557 14 O -0.580 6.580 15 N -0.564 5.564 16 C -0.300 4.300 17 H 0.102 0.898 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.931 3.069 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.274 1.274 24 C 0.008 3.992 25 C -0.112 4.112 26 C -0.129 4.129 27 C -0.142 4.142 28 C -0.128 4.128 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.089 0.911 32 H 0.401 0.599 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.068 0.932 46 H 0.086 0.914 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.095 0.905 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.031 -10.416 -12.802 25.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.269 6.269 3 C 0.022 3.978 4 H 0.104 0.896 5 C 0.276 3.724 6 O -0.402 6.402 7 N -0.379 5.379 8 C 0.005 3.995 9 C -0.153 4.153 10 C -0.102 4.102 11 N -0.176 5.176 12 C -0.122 4.122 13 C 0.229 3.771 14 O -0.464 6.464 15 N -0.201 5.201 16 C -0.429 4.429 17 H 0.120 0.880 18 C -0.180 4.180 19 N -0.543 5.543 20 Si 0.758 3.242 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.121 4.121 25 C -0.131 4.131 26 C -0.166 4.166 27 C -0.180 4.180 28 C -0.165 4.165 29 H 0.063 0.937 30 H 0.060 0.940 31 H 0.107 0.893 32 H 0.236 0.764 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.072 0.928 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.109 0.891 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.087 0.913 46 H 0.104 0.896 47 H 0.086 0.914 48 H 0.099 0.901 49 H 0.113 0.887 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -19.828 -10.254 -12.932 25.797 hybrid contribution 0.817 -0.123 0.544 0.990 sum -19.010 -10.377 -12.388 24.950 Atomic orbital electron populations 1.22853 0.80764 1.03281 0.99845 1.87979 1.19805 1.24797 1.94333 1.21866 0.97045 0.86770 0.92089 0.89572 1.21360 0.77181 0.81664 0.92232 1.90714 1.49654 1.53782 1.46049 1.46051 1.68102 1.14510 1.09268 1.21437 1.01270 0.94132 0.82697 1.23342 0.97898 0.94849 0.99224 1.23865 0.93227 0.93840 0.99282 1.68405 1.00880 1.39758 1.08513 1.22467 0.93244 1.00683 0.95836 1.19677 0.84850 0.85079 0.87520 1.90511 1.86083 1.52754 1.17100 1.41868 1.06145 1.59558 1.12495 1.19639 0.83090 1.42470 0.97712 0.88005 1.25270 0.99980 0.97381 0.95336 1.69606 1.30850 1.47973 1.05872 0.85913 0.80742 0.79244 0.78296 1.19873 1.20960 1.19920 1.23965 0.94863 0.98023 0.95293 1.22781 0.93355 1.00414 0.96529 1.22890 0.98925 1.00029 0.94772 1.22796 0.97598 1.00656 0.96927 1.22861 0.99390 0.97714 0.96581 0.93749 0.93987 0.89257 0.76421 0.91262 0.91229 0.87735 0.91466 0.88804 0.89134 0.92797 0.77486 0.91802 0.89118 0.91120 0.87546 0.91316 0.89552 0.91356 0.90114 0.88684 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.79 101.05 1.09 1.31 16 2 O -0.35 -3.53 8.02 -55.09 -0.44 -3.97 16 3 C 0.08 0.72 2.52 -27.88 -0.07 0.65 16 4 H 0.09 0.53 7.83 -51.93 -0.41 0.13 16 5 C 0.49 5.49 7.10 -10.99 -0.08 5.41 16 6 O -0.53 -8.16 16.51 -14.30 -0.24 -8.39 16 7 N -0.73 -6.68 5.47 -60.30 -0.33 -7.01 16 8 C 0.13 1.31 5.53 -4.05 -0.02 1.29 16 9 C -0.13 -1.40 3.94 -89.70 -0.35 -1.76 16 10 C 0.03 0.39 6.31 -2.77 -0.02 0.37 16 11 N -0.45 -7.31 5.95 -239.75 -1.43 -8.74 16 12 C 0.01 0.17 5.31 -4.97 -0.03 0.15 16 13 C 0.44 10.52 7.59 -10.99 -0.08 10.43 16 14 O -0.58 -15.66 15.12 5.55 0.08 -15.57 16 15 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 16 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 17 H 0.10 2.98 7.16 -52.48 -0.38 2.60 16 18 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 19 N -0.90 -24.65 13.05 55.50 0.72 -23.92 16 20 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 24 C 0.01 0.10 7.54 -2.77 -0.02 0.07 16 25 C -0.11 -0.89 3.54 -89.71 -0.32 -1.20 16 26 C -0.13 -0.88 7.55 -25.92 -0.20 -1.07 16 27 C -0.14 -1.08 8.08 -25.92 -0.21 -1.29 16 28 C -0.13 -1.20 7.50 -25.83 -0.19 -1.39 16 29 H 0.04 0.36 8.11 -51.93 -0.42 -0.06 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.40 2.72 8.32 -40.82 -0.34 2.38 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.07 0.83 7.84 -51.92 -0.41 0.42 16 35 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.07 1.02 7.53 -51.93 -0.39 0.63 16 37 H 0.09 1.50 8.09 -51.93 -0.42 1.08 16 38 H 0.09 1.49 8.14 -51.93 -0.42 1.06 16 39 H 0.05 0.87 7.69 -51.93 -0.40 0.47 16 40 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 41 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 42 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.07 0.76 7.75 -51.93 -0.40 0.36 16 44 H 0.11 0.76 7.93 -51.93 -0.41 0.34 16 45 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.09 0.60 7.78 -51.93 -0.40 0.19 16 47 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 49 H 0.09 1.01 6.99 -51.93 -0.36 0.65 16 50 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 409.39 15.07 6.17 6.17 Total: -1.00 -34.56 409.39 -9.70 -44.26 By element: Atomic # 1 Polarization: 19.02 SS G_CDS: -8.43 Total: 10.59 kcal Atomic # 6 Polarization: 5.68 SS G_CDS: -0.74 Total: 4.94 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -1.09 Total: -54.12 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.59 Total: -27.94 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -34.56 -9.70 -44.26 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692323752.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.875 kcal (2) G-P(sol) polarization free energy of solvation -34.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds