Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99847 * 2 1 4 4 H 1.08998 * 109.47373 * 329.83270 * 3 2 1 5 5 C 1.50703 * 109.47087 * 89.83469 * 3 2 1 6 6 O 1.21280 * 119.99883 * 4.99767 * 5 3 2 7 7 N 1.34773 * 119.99870 * 185.00292 * 5 3 2 8 8 C 1.46501 * 119.99877 * 180.02562 * 7 5 3 9 9 C 1.53787 * 113.61028 * 254.13285 * 8 7 5 10 10 C 1.54057 * 86.98326 * 270.83594 * 9 8 7 11 11 C 1.53000 * 113.61719 * 220.02033 * 10 9 8 12 12 N 1.46904 * 109.47100 * 272.49680 * 11 10 9 13 13 C 1.46900 * 110.99859 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47181 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99892 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00354 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00474 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99353 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00199 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99710 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99751 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47020 * 90.00584 * 21 19 17 23 23 H 1.48505 * 109.47111 * 210.00144 * 21 19 17 24 24 H 1.48499 * 109.47348 * 330.00214 * 21 19 17 25 25 C 1.53778 * 87.07751 * 334.56880 * 10 9 8 26 26 C 1.53005 * 109.47219 * 209.83499 * 3 2 1 27 27 C 1.52993 * 117.50130 * 132.11057 * 26 3 2 28 28 C 1.52996 * 117.49780 * 63.48671 * 26 3 2 29 29 H 1.08995 * 109.47269 * 304.69358 * 1 2 3 30 30 H 1.09005 * 109.47179 * 64.69036 * 1 2 3 31 31 H 1.08998 * 109.47020 * 184.69239 * 1 2 3 32 32 H 0.97001 * 120.00107 * 359.97438 * 7 5 3 33 33 H 1.08994 * 112.84928 * 25.32236 * 8 7 5 34 34 H 1.08996 * 113.61454 * 25.42560 * 9 8 7 35 35 H 1.08998 * 113.61540 * 156.33332 * 9 8 7 36 36 H 1.09000 * 113.68668 * 89.12628 * 10 9 8 37 37 H 1.08991 * 109.47183 * 32.49594 * 11 10 9 38 38 H 1.08996 * 109.46825 * 152.49941 * 11 10 9 39 39 H 1.00898 * 111.00306 * 56.04446 * 12 11 10 40 40 H 1.08998 * 109.47377 * 299.99947 * 13 12 11 41 41 H 1.09004 * 109.47063 * 60.00018 * 13 12 11 42 42 H 0.97005 * 119.99648 * 0.02562 * 16 14 13 43 43 H 0.97004 * 119.99297 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.61515 * 270.88104 * 25 10 9 45 45 H 1.09005 * 113.61138 * 139.97779 * 25 10 9 46 46 H 1.09003 * 115.54415 * 277.82200 * 26 3 2 47 47 H 1.09008 * 117.49789 * 0.02562 * 27 26 3 48 48 H 1.08993 * 117.50136 * 145.01639 * 27 26 3 49 49 H 1.08997 * 117.49791 * 214.97968 * 28 26 3 50 50 H 1.08996 * 117.49962 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3463 1.9988 -0.5164 5 6 2.2107 1.7661 1.4208 6 8 1.9729 1.0134 2.3416 7 7 2.6543 3.0144 1.6683 8 6 2.8498 3.4620 3.0495 9 6 1.7697 4.4416 3.5383 10 6 2.6617 5.5715 2.9896 11 6 2.7095 6.8070 3.8908 12 7 1.6008 7.7073 3.5467 13 6 1.6153 8.9077 4.3934 14 6 0.4666 9.8055 4.0118 15 8 -0.2900 9.4773 3.1223 16 7 0.2794 10.9724 4.6594 17 6 -0.7659 11.7890 4.3126 18 1 -1.4395 11.4967 3.5206 19 6 -0.9592 12.9918 4.9807 20 7 -0.1398 13.3470 5.9447 21 14 -2.3830 14.1046 4.5076 22 1 -3.5778 13.7501 5.3151 23 1 -2.0128 15.5193 4.7663 24 1 -2.6904 13.9292 3.0654 25 6 3.8532 4.6194 3.1859 26 6 3.3608 1.2625 -0.7177 27 6 3.6354 2.3372 -1.7714 28 6 3.3601 0.8953 -2.2029 29 1 -0.3633 0.5849 0.8449 30 1 -0.3634 0.4394 -0.9291 31 1 -0.3633 -1.0242 0.0841 32 1 2.8448 3.6164 0.9318 33 1 3.0366 2.6386 3.7388 34 1 0.8192 4.3404 3.0145 35 1 1.6568 4.4617 4.6222 36 1 2.4658 5.8163 1.9457 37 1 2.6186 6.5005 4.9327 38 1 3.6571 7.3258 3.7460 39 1 0.7142 7.2299 3.6107 40 1 1.5171 8.6160 5.4390 41 1 2.5554 9.4409 4.2517 42 1 0.8843 11.2347 5.3710 43 1 -0.2746 14.1870 6.4108 44 1 4.3089 4.6880 4.1737 45 1 4.5835 4.6616 2.3778 46 1 4.2026 0.9211 -0.1151 47 1 2.8540 3.0752 -1.9532 48 1 4.6580 2.7033 -1.8623 49 1 4.2017 0.3129 -2.5777 50 1 2.3977 0.6840 -2.6687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700372852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -70.720898 kcal Electronic energy + Delta-G solvation = -28733.514947 eV Core-core repulsion = 24569.371568 eV Total energy + Delta-G solvation = -4164.143379 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.79488 -39.41718 -38.24849 -37.75383 -36.79004 -35.21314 -33.88456 -33.25378 -31.22535 -29.52670 -28.32931 -26.49954 -25.99222 -25.47090 -23.77164 -22.85646 -22.31214 -21.82257 -20.88749 -19.55415 -19.11038 -18.14606 -17.88117 -17.09444 -16.47728 -16.29706 -15.98665 -15.59609 -15.44124 -15.11226 -14.88988 -14.58130 -14.49670 -14.10120 -13.98818 -13.93584 -13.63100 -13.37314 -13.05552 -12.92469 -12.65129 -12.31300 -12.07488 -12.04697 -11.76934 -11.63971 -11.55950 -11.50792 -11.16349 -11.06080 -10.96975 -10.95078 -10.65670 -10.64803 -10.40025 -10.29603 -10.21472 -9.59759 -9.51521 -9.29364 -8.46299 -8.05350 -7.96191 -6.42288 -3.83086 2.24171 2.63652 2.97251 3.17218 3.25828 3.31834 3.70549 3.90655 4.05531 4.09669 4.23802 4.25424 4.29774 4.38643 4.50748 4.53966 4.60728 4.68454 4.82237 4.85965 5.02456 5.11336 5.13316 5.16650 5.24899 5.32127 5.36510 5.40375 5.44881 5.48338 5.54262 5.58692 5.59804 5.64114 5.70706 5.79060 5.85710 5.97670 5.99321 6.06252 6.26591 6.38028 6.58075 7.19092 7.23968 7.54598 7.68065 7.91430 8.05977 8.60908 9.17376 9.53986 10.05514 10.75462 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.001664 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.427662 B =16826.390562 C =17238.779802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.354 6.354 3 C 0.105 3.895 4 H 0.087 0.913 5 C 0.496 3.504 6 O -0.524 6.524 7 N -0.706 5.706 8 C 0.119 3.881 9 C -0.150 4.150 10 C -0.105 4.105 11 C 0.068 3.932 12 N -0.669 5.669 13 C 0.050 3.950 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.270 1.270 25 C -0.138 4.138 26 C -0.157 4.157 27 C -0.171 4.171 28 C -0.159 4.159 29 H 0.046 0.954 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.402 0.598 33 H 0.100 0.900 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.028 0.972 38 H 0.071 0.929 39 H 0.349 0.651 40 H 0.042 0.958 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.095 0.905 45 H 0.074 0.926 46 H 0.114 0.886 47 H 0.100 0.900 48 H 0.104 0.896 49 H 0.099 0.901 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.332 -23.293 -10.680 27.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C 0.043 3.957 4 H 0.105 0.895 5 C 0.282 3.718 6 O -0.399 6.399 7 N -0.359 5.359 8 C 0.014 3.986 9 C -0.189 4.189 10 C -0.124 4.124 11 C -0.061 4.061 12 N -0.301 5.301 13 C -0.083 4.083 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.201 5.201 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 C -0.177 4.177 26 C -0.175 4.175 27 C -0.208 4.208 28 C -0.196 4.196 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.109 0.891 32 H 0.237 0.763 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.168 0.832 40 H 0.060 0.940 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.113 0.887 45 H 0.093 0.907 46 H 0.132 0.868 47 H 0.118 0.882 48 H 0.122 0.878 49 H 0.118 0.882 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 10.075 -23.777 -11.008 28.071 hybrid contribution -0.737 1.057 0.938 1.594 sum 9.338 -22.720 -10.070 26.548 Atomic orbital electron populations 1.22894 0.80393 1.03489 1.00074 1.88009 1.20107 1.24613 1.94344 1.21521 0.95065 0.87086 0.91983 0.89528 1.21261 0.76961 0.81647 0.91971 1.90721 1.49349 1.53878 1.45949 1.45687 1.67653 1.14251 1.08305 1.21833 0.96896 0.96409 0.83498 1.23574 0.98276 0.95553 1.01498 1.22671 0.95777 0.92972 1.00942 1.21951 0.95662 0.92537 0.95998 1.60082 1.06847 1.07114 1.56045 1.21673 0.99497 0.92437 0.94661 1.19831 0.87896 0.83773 0.85887 1.90517 1.48415 1.74647 1.33247 1.41870 1.27799 1.17103 1.33303 1.19704 1.05912 0.99162 1.18120 0.87938 1.25266 0.98819 0.97863 0.96044 1.69616 1.37555 1.24047 1.23096 0.85852 0.80548 0.78730 0.79119 1.20439 1.20914 1.19411 1.23326 0.96596 0.94595 1.03170 1.22086 0.96586 1.06517 0.92353 1.23134 1.03631 0.92395 1.01675 1.22866 1.03717 0.97695 0.95294 0.93545 0.93852 0.89051 0.76283 0.88217 0.90980 0.89245 0.88241 0.95396 0.91029 0.83242 0.93973 0.89653 0.77460 0.91883 0.88669 0.90737 0.86782 0.88174 0.87787 0.88222 0.88358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 10.79 101.05 1.09 1.31 16 2 O -0.35 -3.63 9.85 -55.09 -0.54 -4.17 16 3 C 0.11 0.87 2.69 -27.88 -0.07 0.80 16 4 H 0.09 0.56 7.61 -51.93 -0.40 0.16 16 5 C 0.50 5.23 7.11 -10.99 -0.08 5.15 16 6 O -0.52 -7.74 16.13 -14.30 -0.23 -7.97 16 7 N -0.71 -5.83 5.23 -53.02 -0.28 -6.11 16 8 C 0.12 1.06 4.30 -67.11 -0.29 0.77 16 9 C -0.15 -1.45 7.45 -25.77 -0.19 -1.65 16 10 C -0.10 -0.99 3.79 -89.66 -0.34 -1.33 16 11 C 0.07 0.78 5.52 -3.82 -0.02 0.76 16 12 N -0.67 -10.58 6.12 -115.06 -0.70 -11.29 16 13 C 0.05 0.88 6.17 -4.98 -0.03 0.85 16 14 C 0.44 10.44 7.82 -10.99 -0.09 10.36 16 15 O -0.58 -15.91 15.78 5.55 0.09 -15.83 16 16 N -0.56 -14.35 5.29 -10.96 -0.06 -14.41 16 17 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 18 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 20 N -0.90 -24.54 13.05 55.50 0.72 -23.81 16 21 Si 0.93 21.05 29.55 -169.99 -5.02 16.03 16 22 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 23 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 C -0.14 -1.03 7.38 -25.92 -0.19 -1.22 16 26 C -0.16 -1.04 5.31 -90.62 -0.48 -1.52 16 27 C -0.17 -0.79 10.18 -26.74 -0.27 -1.06 16 28 C -0.16 -0.86 10.21 -26.73 -0.27 -1.14 16 29 H 0.05 0.40 8.12 -51.93 -0.42 -0.02 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.40 2.45 8.70 -40.82 -0.36 2.10 16 33 H 0.10 1.03 7.50 -51.93 -0.39 0.64 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.85 7.90 -51.93 -0.41 0.44 16 36 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.03 0.31 7.85 -51.93 -0.41 -0.10 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.35 5.79 8.43 -39.29 -0.33 5.46 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 42 H 0.39 9.52 7.90 -40.82 -0.32 9.19 16 43 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 44 H 0.09 0.65 8.10 -51.93 -0.42 0.23 16 45 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.11 0.83 8.13 -51.93 -0.42 0.41 16 47 H 0.10 0.39 8.07 -51.92 -0.42 -0.03 16 48 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 49 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 419.55 15.07 6.32 6.32 Total: -1.00 -34.45 419.55 -9.64 -44.09 By element: Atomic # 1 Polarization: 21.55 SS G_CDS: -8.46 Total: 13.10 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -1.48 Total: 4.05 kcal Atomic # 7 Polarization: -55.30 SS G_CDS: -0.32 Total: -55.62 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -0.69 Total: -27.97 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.32 Total: 6.32 kcal Total: -34.45 -9.64 -44.09 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700372852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.636 kcal (2) G-P(sol) polarization free energy of solvation -34.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds