Wall clock time and date at job start Sat Apr 11 2020 05:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42904 * 113.99847 * 2 1 4 4 H 1.08998 * 109.47373 * 329.83270 * 3 2 1 5 5 C 1.50703 * 109.47087 * 89.83469 * 3 2 1 6 6 O 1.21280 * 119.99883 * 4.99767 * 5 3 2 7 7 N 1.34773 * 119.99870 * 185.00292 * 5 3 2 8 8 C 1.46501 * 119.99877 * 180.02562 * 7 5 3 9 9 C 1.53787 * 113.61028 * 254.13285 * 8 7 5 10 10 C 1.54057 * 86.98326 * 270.83594 * 9 8 7 11 11 C 1.53000 * 113.61719 * 220.02033 * 10 9 8 12 12 N 1.46904 * 109.47100 * 272.49680 * 11 10 9 13 13 C 1.46900 * 110.99859 * 180.02562 * 12 11 10 14 14 C 1.50700 * 109.47181 * 179.97438 * 13 12 11 15 15 O 1.21294 * 119.99892 * 0.02562 * 14 13 12 16 16 N 1.34771 * 120.00354 * 179.97438 * 14 13 12 17 17 C 1.37099 * 120.00474 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99353 * 0.02562 * 17 16 14 19 19 C 1.38949 * 120.00199 * 179.97438 * 17 16 14 20 20 N 1.31410 * 119.99710 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99751 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47020 * 90.00584 * 21 19 17 23 23 H 1.48505 * 109.47111 * 210.00144 * 21 19 17 24 24 H 1.48499 * 109.47348 * 330.00214 * 21 19 17 25 25 C 1.53778 * 87.07751 * 334.56880 * 10 9 8 26 26 C 1.53005 * 109.47219 * 209.83499 * 3 2 1 27 27 C 1.52993 * 117.50130 * 132.11057 * 26 3 2 28 28 C 1.52996 * 117.49780 * 63.48671 * 26 3 2 29 29 H 1.08995 * 109.47269 * 304.69358 * 1 2 3 30 30 H 1.09005 * 109.47179 * 64.69036 * 1 2 3 31 31 H 1.08998 * 109.47020 * 184.69239 * 1 2 3 32 32 H 0.97001 * 120.00107 * 359.97438 * 7 5 3 33 33 H 1.08994 * 112.84928 * 25.32236 * 8 7 5 34 34 H 1.08996 * 113.61454 * 25.42560 * 9 8 7 35 35 H 1.08998 * 113.61540 * 156.33332 * 9 8 7 36 36 H 1.09000 * 113.68668 * 89.12628 * 10 9 8 37 37 H 1.08991 * 109.47183 * 32.49594 * 11 10 9 38 38 H 1.08996 * 109.46825 * 152.49941 * 11 10 9 39 39 H 1.00898 * 111.00306 * 56.04446 * 12 11 10 40 40 H 1.08998 * 109.47377 * 299.99947 * 13 12 11 41 41 H 1.09004 * 109.47063 * 60.00018 * 13 12 11 42 42 H 0.97005 * 119.99648 * 0.02562 * 16 14 13 43 43 H 0.97004 * 119.99297 * 179.97438 * 20 19 17 44 44 H 1.08997 * 113.61515 * 270.88104 * 25 10 9 45 45 H 1.09005 * 113.61138 * 139.97779 * 25 10 9 46 46 H 1.09003 * 115.54415 * 277.82200 * 26 3 2 47 47 H 1.09008 * 117.49789 * 0.02562 * 27 26 3 48 48 H 1.08993 * 117.50136 * 145.01639 * 27 26 3 49 49 H 1.08997 * 117.49791 * 214.97968 * 28 26 3 50 50 H 1.08996 * 117.49962 * 359.97438 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3463 1.9988 -0.5164 5 6 2.2107 1.7661 1.4208 6 8 1.9729 1.0134 2.3416 7 7 2.6543 3.0144 1.6683 8 6 2.8498 3.4620 3.0495 9 6 1.7697 4.4416 3.5383 10 6 2.6617 5.5715 2.9896 11 6 2.7095 6.8070 3.8908 12 7 1.6008 7.7073 3.5467 13 6 1.6153 8.9077 4.3934 14 6 0.4666 9.8055 4.0118 15 8 -0.2900 9.4773 3.1223 16 7 0.2794 10.9724 4.6594 17 6 -0.7659 11.7890 4.3126 18 1 -1.4395 11.4967 3.5206 19 6 -0.9592 12.9918 4.9807 20 7 -0.1398 13.3470 5.9447 21 14 -2.3830 14.1046 4.5076 22 1 -3.5778 13.7501 5.3151 23 1 -2.0128 15.5193 4.7663 24 1 -2.6904 13.9292 3.0654 25 6 3.8532 4.6194 3.1859 26 6 3.3608 1.2625 -0.7177 27 6 3.6354 2.3372 -1.7714 28 6 3.3601 0.8953 -2.2029 29 1 -0.3633 0.5849 0.8449 30 1 -0.3634 0.4394 -0.9291 31 1 -0.3633 -1.0242 0.0841 32 1 2.8448 3.6164 0.9318 33 1 3.0366 2.6386 3.7388 34 1 0.8192 4.3404 3.0145 35 1 1.6568 4.4617 4.6222 36 1 2.4658 5.8163 1.9457 37 1 2.6186 6.5005 4.9327 38 1 3.6571 7.3258 3.7460 39 1 0.7142 7.2299 3.6107 40 1 1.5171 8.6160 5.4390 41 1 2.5554 9.4409 4.2517 42 1 0.8843 11.2347 5.3710 43 1 -0.2746 14.1870 6.4108 44 1 4.3089 4.6880 4.1737 45 1 4.5835 4.6616 2.3778 46 1 4.2026 0.9211 -0.1151 47 1 2.8540 3.0752 -1.9532 48 1 4.6580 2.7033 -1.8623 49 1 4.2017 0.3129 -2.5777 50 1 2.3977 0.6840 -2.6687 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700372852.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:26 Heat of formation + Delta-G solvation = -95.981390 kcal Electronic energy + Delta-G solvation = -28734.610324 eV Core-core repulsion = 24569.371568 eV Total energy + Delta-G solvation = -4165.238756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.55838 -40.29404 -39.92834 -38.53806 -37.35222 -36.51498 -35.76720 -34.18425 -33.25775 -30.33513 -29.39537 -27.43914 -26.89887 -26.63711 -25.23525 -23.29013 -23.07814 -22.56399 -21.53349 -21.13169 -20.18145 -19.86698 -18.85312 -17.89111 -17.77039 -17.14184 -16.92319 -16.75943 -16.49760 -16.24101 -15.90715 -15.74989 -15.61483 -15.38963 -15.20194 -14.93961 -14.54920 -14.35944 -14.17097 -13.97458 -13.66420 -13.50258 -13.35673 -13.08939 -12.84490 -12.65859 -12.57889 -12.42397 -12.40260 -12.21155 -12.12541 -11.91444 -11.74615 -11.51221 -11.44931 -11.41006 -11.16330 -11.07753 -10.36553 -10.33550 -10.07206 -10.01980 -9.30016 -8.47052 -5.95855 1.37830 1.41696 1.44845 1.54528 1.95780 2.05021 2.29034 2.44064 2.93728 3.20217 3.20289 3.49926 3.51450 3.55185 3.73452 3.77249 3.81518 3.91867 3.98363 4.03947 4.17540 4.33107 4.33379 4.45565 4.46209 4.50338 4.54407 4.56327 4.69464 4.77515 4.79414 4.81574 4.83197 4.87383 4.90903 5.02832 5.06815 5.15619 5.18834 5.27633 5.29182 5.40554 5.63377 5.90898 5.94317 6.13513 6.42844 6.50092 6.59880 7.12212 7.16544 7.55987 8.11283 8.70273 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.018032 B = 0.001664 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1552.427662 B =16826.390562 C =17238.779802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.378 6.378 3 C 0.107 3.893 4 H 0.107 0.893 5 C 0.493 3.507 6 O -0.575 6.575 7 N -0.692 5.692 8 C 0.116 3.884 9 C -0.152 4.152 10 C -0.099 4.099 11 C 0.069 3.931 12 N -0.682 5.682 13 C 0.064 3.936 14 C 0.436 3.564 15 O -0.624 6.624 16 N -0.573 5.573 17 C -0.335 4.335 18 H 0.078 0.922 19 C -0.014 4.014 20 N -0.920 5.920 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.270 1.270 24 H -0.273 1.273 25 C -0.118 4.118 26 C -0.171 4.171 27 C -0.153 4.153 28 C -0.160 4.160 29 H 0.031 0.969 30 H 0.065 0.935 31 H 0.099 0.901 32 H 0.415 0.585 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.090 0.910 36 H 0.096 0.904 37 H 0.038 0.962 38 H 0.083 0.917 39 H 0.341 0.659 40 H 0.064 0.936 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.107 0.893 45 H 0.091 0.909 46 H 0.103 0.897 47 H 0.111 0.889 48 H 0.116 0.884 49 H 0.105 0.895 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.514 -22.677 -11.371 27.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.296 6.296 3 C 0.046 3.954 4 H 0.125 0.875 5 C 0.280 3.720 6 O -0.454 6.454 7 N -0.345 5.345 8 C 0.011 3.989 9 C -0.191 4.191 10 C -0.118 4.118 11 C -0.059 4.059 12 N -0.314 5.314 13 C -0.068 4.068 14 C 0.224 3.776 15 O -0.511 6.511 16 N -0.211 5.211 17 C -0.464 4.464 18 H 0.097 0.903 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.817 3.183 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.198 1.198 25 C -0.156 4.156 26 C -0.190 4.190 27 C -0.190 4.190 28 C -0.197 4.197 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.117 0.883 32 H 0.252 0.748 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.057 0.943 38 H 0.101 0.899 39 H 0.159 0.841 40 H 0.082 0.918 41 H 0.123 0.877 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.126 0.874 45 H 0.110 0.890 46 H 0.121 0.879 47 H 0.129 0.871 48 H 0.134 0.866 49 H 0.123 0.877 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 11.301 -23.137 -11.702 28.284 hybrid contribution -1.096 0.820 1.151 1.789 sum 10.205 -22.317 -10.550 26.711 Atomic orbital electron populations 1.23008 0.79547 1.04059 1.00546 1.87974 1.21246 1.26002 1.94340 1.21653 0.96321 0.86762 0.90700 0.87514 1.21775 0.76029 0.81697 0.92530 1.90692 1.51777 1.55332 1.47555 1.45600 1.66487 1.13806 1.08627 1.21813 0.97431 0.96207 0.83496 1.23587 0.97807 0.96240 1.01482 1.22593 0.96808 0.92144 1.00240 1.22068 0.94377 0.92476 0.97017 1.60112 1.07705 1.07415 1.56184 1.21544 0.97185 0.92171 0.95940 1.20935 0.88621 0.83528 0.84511 1.90484 1.50290 1.75441 1.34867 1.41944 1.27598 1.17704 1.33821 1.19668 1.07188 1.00770 1.18796 0.90350 1.26049 1.01084 0.98544 0.95654 1.69674 1.38491 1.24580 1.23313 0.84922 0.77603 0.77248 0.78523 1.19682 1.19486 1.19771 1.23251 0.95863 0.91978 1.04556 1.22007 0.95277 1.08916 0.92813 1.23243 1.04677 0.91974 0.99077 1.22950 1.04077 0.98693 0.94019 0.95048 0.91609 0.88267 0.74756 0.89805 0.92595 0.89147 0.88616 0.94338 0.89910 0.84100 0.91848 0.87674 0.76955 0.91294 0.87430 0.89004 0.87869 0.87061 0.86609 0.87653 0.88281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.79 113.37 1.22 1.60 16 2 O -0.38 -7.80 9.85 -129.99 -1.28 -9.08 16 3 C 0.11 1.72 2.69 29.85 0.08 1.80 16 4 H 0.11 1.23 7.61 -2.39 -0.02 1.21 16 5 C 0.49 10.47 7.11 87.66 0.62 11.10 16 6 O -0.57 -17.72 16.13 15.96 0.26 -17.47 16 7 N -0.69 -10.89 5.23 -440.03 -2.30 -13.19 16 8 C 0.12 1.97 4.30 45.52 0.20 2.17 16 9 C -0.15 -2.85 7.45 31.22 0.23 -2.62 16 10 C -0.10 -1.67 3.79 -10.17 -0.04 -1.71 16 11 C 0.07 1.42 5.52 86.30 0.48 1.90 16 12 N -0.68 -20.62 6.12 -517.94 -3.17 -23.79 16 13 C 0.06 2.15 6.17 85.56 0.53 2.68 16 14 C 0.44 20.74 7.82 87.66 0.69 21.42 16 15 O -0.62 -34.64 15.78 -3.07 -0.05 -34.68 16 16 N -0.57 -29.42 5.29 -306.99 -1.62 -31.05 16 17 C -0.33 -19.04 9.68 84.04 0.81 -18.23 16 18 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 19 C -0.01 -0.72 5.50 84.93 0.47 -0.26 16 20 N -0.92 -49.48 13.05 21.66 0.28 -49.20 16 21 Si 0.99 42.83 29.55 68.60 2.03 44.86 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 25 C -0.12 -1.45 7.38 31.12 0.23 -1.22 16 26 C -0.17 -2.09 5.31 -10.80 -0.06 -2.15 16 27 C -0.15 -1.04 10.18 30.59 0.31 -0.73 16 28 C -0.16 -1.49 10.21 30.59 0.31 -1.18 16 29 H 0.03 0.57 8.12 -2.39 -0.02 0.55 16 30 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.42 4.34 8.70 -92.71 -0.81 3.54 16 33 H 0.08 1.75 7.50 -2.39 -0.02 1.73 16 34 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.09 1.67 7.90 -2.39 -0.02 1.65 16 36 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.04 0.74 7.85 -2.39 -0.02 0.72 16 38 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.34 11.15 8.43 -89.70 -0.76 10.40 16 40 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.11 3.15 8.14 -2.38 -0.02 3.13 16 42 H 0.40 19.26 7.90 -92.70 -0.73 18.52 16 43 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.11 1.13 8.10 -2.39 -0.02 1.11 16 45 H 0.09 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.10 1.47 8.13 -2.39 -0.02 1.45 16 47 H 0.11 0.53 8.07 -2.38 -0.02 0.51 16 48 H 0.12 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 50 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 Total: -1.00 -76.15 419.55 -1.10 -77.25 By element: Atomic # 1 Polarization: 43.12 SS G_CDS: -1.33 Total: 41.79 kcal Atomic # 6 Polarization: 8.49 SS G_CDS: 6.08 Total: 14.57 kcal Atomic # 7 Polarization: -110.42 SS G_CDS: -6.81 Total: -117.23 kcal Atomic # 8 Polarization: -60.16 SS G_CDS: -1.07 Total: -61.23 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -76.15 -1.10 -77.25 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700372852.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.732 kcal (2) G-P(sol) polarization free energy of solvation -76.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds