Wall clock time and date at job start Sat Apr 11 2020 05:48:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00168 * 2 1 4 4 C 1.50695 * 109.47045 * 180.02562 * 3 2 1 5 5 O 1.21274 * 120.00413 * 0.27121 * 4 3 2 6 6 N 1.34784 * 119.99635 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99971 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47267 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.47257 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00113 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99956 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99765 * 179.97438 * 11 9 8 13 13 C 1.53575 * 112.24243 * 300.34875 * 12 11 9 14 14 C 1.54176 * 106.70175 * 237.98090 * 13 12 11 15 15 C 1.54766 * 104.36306 * 335.87152 * 14 13 12 16 16 C 1.54774 * 103.21018 * 37.32783 * 15 14 13 17 17 H 1.08996 * 111.86934 * 84.92306 * 16 15 14 18 18 N 1.46980 * 108.68152 * 209.79565 * 16 15 14 19 19 C 1.36939 * 125.58153 * 294.10404 * 18 16 15 20 20 H 1.07990 * 119.99814 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00051 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99955 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00156 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47212 * 89.99468 * 23 21 19 25 25 H 1.48497 * 109.47545 * 209.99788 * 23 21 19 26 26 H 1.48507 * 109.47059 * 330.00067 * 23 21 19 27 27 C 1.47379 * 108.83998 * 114.12701 * 18 16 15 28 28 C 1.54863 * 104.81942 * 335.30951 * 27 18 16 29 29 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46993 * 300.00027 * 1 2 3 31 31 H 1.08995 * 109.47099 * 60.00204 * 1 2 3 32 32 H 1.09005 * 109.47002 * 59.99866 * 3 2 1 33 33 H 1.09002 * 109.46834 * 300.00233 * 3 2 1 34 34 H 0.96999 * 120.00044 * 0.02562 * 6 4 3 35 35 H 1.09004 * 109.47024 * 300.00310 * 7 6 4 36 36 H 1.09005 * 109.47136 * 59.99926 * 7 6 4 37 37 H 1.09004 * 109.47330 * 300.00096 * 8 7 6 38 38 H 1.09005 * 109.47124 * 59.99892 * 8 7 6 39 39 H 0.96999 * 120.00050 * 0.02562 * 11 9 8 40 40 H 1.08999 * 110.02029 * 358.13080 * 13 12 11 41 41 H 1.09001 * 110.01901 * 119.52387 * 13 12 11 42 42 H 1.08998 * 110.80794 * 216.93365 * 14 13 12 43 43 H 1.09001 * 110.09954 * 94.45947 * 14 13 12 44 44 H 1.09002 * 110.66713 * 278.89756 * 15 14 13 45 45 H 1.08996 * 110.66668 * 155.75935 * 15 14 13 46 46 H 0.96996 * 119.99870 * 179.97438 * 22 21 19 47 47 H 1.08994 * 110.36702 * 94.14495 * 27 18 16 48 48 H 1.08994 * 110.36467 * 216.36218 * 27 18 16 49 49 H 1.09001 * 110.97138 * 278.95232 * 28 27 18 50 50 H 1.08999 * 110.97276 * 155.19264 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0916 -0.0060 6 7 4.2765 2.2969 -0.0002 7 6 5.7369 2.1812 -0.0003 8 6 6.3592 3.5789 0.0009 9 6 7.8615 3.4599 0.0002 10 8 8.3831 2.3650 -0.0006 11 7 8.6254 4.5702 0.0005 12 6 10.0859 4.4545 0.0004 13 6 10.6087 3.6923 1.2268 14 6 11.5792 4.6414 1.9579 15 6 12.0581 5.6212 0.8597 16 6 10.7888 5.8375 0.0008 17 1 10.1493 6.6190 0.4111 18 7 11.1986 6.1139 -1.3834 19 6 11.8867 7.2203 -1.8049 20 1 12.1739 7.9807 -1.0940 21 6 12.2149 7.3643 -3.1460 22 7 11.8652 6.4372 -4.0123 23 14 13.1528 8.8739 -3.7211 24 1 14.6120 8.6074 -3.6487 25 1 12.7757 9.1867 -5.1229 26 1 12.8166 10.0277 -2.8487 27 6 10.7473 5.0055 -2.2437 28 6 10.6236 3.7903 -1.2917 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8593 3.1726 0.0009 35 1 6.0585 1.6399 0.8895 36 1 6.0585 1.6406 -0.8905 37 1 6.0376 4.1206 -0.8887 38 1 6.0375 4.1191 0.8913 39 1 8.2082 5.4459 0.0015 40 1 9.7781 3.4154 1.8761 41 1 11.1483 2.7999 0.9095 42 1 12.4232 4.0892 2.3710 43 1 11.0536 5.1796 2.7467 44 1 12.8537 5.1729 0.2645 45 1 12.3891 6.5613 1.3008 46 1 12.0942 6.5381 -4.9495 47 1 9.7798 5.2397 -2.6876 48 1 11.4831 4.8061 -3.0226 49 1 11.5964 3.3303 -1.1180 50 1 9.9128 3.0611 -1.6803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700864340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:37 Heat of formation + Delta-G solvation = -89.681852 kcal Electronic energy + Delta-G solvation = -29970.776538 eV Core-core repulsion = 25805.810950 eV Total energy + Delta-G solvation = -4164.965588 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35190 -39.92767 -38.32100 -37.75288 -35.30757 -34.27735 -33.46408 -31.72470 -31.28109 -29.79130 -28.92490 -26.75284 -26.51205 -25.89930 -23.89158 -23.65677 -21.17882 -20.97523 -20.00516 -19.46533 -18.82780 -17.69315 -17.20621 -17.03592 -16.74658 -16.73752 -15.90652 -15.81123 -15.38551 -14.96895 -14.72746 -14.65277 -14.20020 -13.98617 -13.64054 -13.43287 -13.34278 -13.05476 -12.83654 -12.61312 -12.19777 -12.12241 -11.89447 -11.87259 -11.69178 -11.55191 -11.18082 -10.99913 -10.87459 -10.69177 -10.53691 -10.24497 -10.18229 -10.11212 -10.06293 -9.97583 -9.77709 -9.64713 -9.39205 -9.34393 -8.68501 -8.57387 -6.88466 -5.67387 -3.10844 2.35118 2.43239 2.80471 3.35797 3.37513 3.42160 3.43940 3.74691 4.34406 4.44555 4.57342 4.65568 4.70082 4.78297 4.86727 4.87964 4.92995 5.00757 5.15122 5.24288 5.26041 5.32660 5.49450 5.62897 5.70020 5.80794 5.83382 5.85692 5.98500 6.06119 6.10119 6.14220 6.25161 6.35192 6.41082 6.52949 6.53314 6.58550 6.76363 6.77448 6.97577 7.10365 7.16933 7.51449 7.61966 7.76222 7.85972 7.95115 8.34307 8.45042 9.18630 9.79637 10.43612 11.35004 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.002122 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.177413 B =13193.834159 C =14166.409899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.514 6.514 6 N -0.731 5.731 7 C 0.137 3.863 8 C -0.155 4.155 9 C 0.516 3.484 10 O -0.534 6.534 11 N -0.704 5.704 12 C 0.161 3.839 13 C -0.109 4.109 14 C -0.125 4.125 15 C -0.130 4.130 16 C 0.162 3.838 17 H 0.045 0.955 18 N -0.595 5.595 19 C -0.220 4.220 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.913 3.087 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.152 3.848 28 C -0.141 4.141 29 H 0.091 0.909 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.400 0.600 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.399 0.601 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.074 0.926 45 H 0.058 0.942 46 H 0.252 0.748 47 H 0.008 0.992 48 H 0.108 0.892 49 H 0.067 0.933 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.134 -4.132 10.701 22.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.036 4.036 4 C 0.295 3.705 5 O -0.387 6.387 6 N -0.386 5.386 7 C 0.014 3.986 8 C -0.195 4.195 9 C 0.301 3.699 10 O -0.411 6.411 11 N -0.354 5.354 12 C 0.074 3.926 13 C -0.148 4.148 14 C -0.163 4.163 15 C -0.170 4.170 16 C 0.054 3.946 17 H 0.063 0.937 18 N -0.319 5.319 19 C -0.349 4.349 20 H 0.095 0.905 21 C -0.206 4.206 22 N -0.568 5.568 23 Si 0.744 3.256 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.208 1.208 27 C 0.028 3.972 28 C -0.181 4.181 29 H 0.110 0.890 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.234 0.766 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.118 0.882 38 H 0.116 0.884 39 H 0.233 0.767 40 H 0.078 0.922 41 H 0.087 0.913 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.076 0.924 46 H 0.063 0.937 47 H 0.026 0.974 48 H 0.126 0.874 49 H 0.086 0.914 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.176 -5.817 10.457 21.761 hybrid contribution -0.266 2.101 -0.356 2.147 sum -18.441 -3.716 10.101 21.352 Atomic orbital electron populations 1.22849 0.80270 1.03436 1.00138 1.88033 1.19859 1.25139 1.95419 1.22238 0.91609 0.87121 1.02674 1.20230 0.88639 0.84614 0.76978 1.90774 1.74535 1.26434 1.46996 1.45872 1.07358 1.08692 1.76672 1.21048 0.77422 0.95813 1.04351 1.21816 0.93829 0.98848 1.05022 1.20137 0.88442 0.84744 0.76585 1.90736 1.74811 1.26380 1.49127 1.45903 1.06681 1.08475 1.74344 1.21665 0.78007 0.96867 0.96029 1.22230 0.98497 0.98211 0.95907 1.22359 0.98389 0.97622 0.97939 1.22949 0.99496 0.98181 0.96347 1.21779 0.93109 0.91800 0.87942 0.93703 1.44519 1.64544 1.21903 1.00944 1.19026 1.27151 0.96466 0.92233 0.90523 1.24790 1.01299 0.98638 0.95909 1.69800 1.51259 1.33583 1.02180 0.86097 0.79647 0.82015 0.77848 1.21602 1.21749 1.20807 1.21975 0.98898 0.83331 0.93024 1.23315 0.99902 0.99256 0.95590 0.89017 0.93779 0.93726 0.90187 0.90111 0.76628 0.90373 0.90215 0.88174 0.88425 0.76662 0.92203 0.91276 0.92212 0.92497 0.90712 0.92364 0.93736 0.97365 0.87420 0.91397 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.73 10.24 -55.14 -0.56 -4.30 16 3 C 0.04 0.32 6.42 36.00 0.23 0.55 16 4 C 0.51 5.59 7.91 -10.98 -0.09 5.50 16 5 O -0.51 -8.48 16.50 -14.35 -0.24 -8.72 16 6 N -0.73 -5.98 5.56 -60.30 -0.33 -6.31 16 7 C 0.14 1.48 4.96 -4.05 -0.02 1.46 16 8 C -0.15 -1.38 5.81 -27.89 -0.16 -1.54 16 9 C 0.52 7.16 6.98 -10.99 -0.08 7.08 16 10 O -0.53 -9.42 13.86 5.56 0.08 -9.34 16 11 N -0.70 -10.11 5.23 -45.35 -0.24 -10.34 16 12 C 0.16 2.77 0.73 -129.37 -0.09 2.68 16 13 C -0.11 -1.74 5.25 -25.82 -0.14 -1.88 16 14 C -0.12 -1.83 6.83 -25.19 -0.17 -2.00 16 15 C -0.13 -2.29 6.22 -24.87 -0.15 -2.44 16 16 C 0.16 3.11 3.65 -65.60 -0.24 2.87 16 17 H 0.05 0.84 7.99 -51.93 -0.42 0.42 16 18 N -0.60 -14.23 3.03 -161.13 -0.49 -14.72 16 19 C -0.22 -5.82 10.01 -15.06 -0.15 -5.97 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.29 5.49 -17.43 -0.10 -0.39 16 22 N -0.92 -26.22 10.07 55.49 0.56 -25.66 16 23 Si 0.91 21.53 29.55 -169.99 -5.02 16.51 16 24 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 27 C 0.15 3.64 5.91 -2.58 -0.02 3.62 16 28 C -0.14 -2.84 5.77 -24.74 -0.14 -2.99 16 29 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.40 1.69 8.47 -40.82 -0.35 1.34 16 35 H 0.08 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 37 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.40 4.90 8.50 -40.82 -0.35 4.55 16 40 H 0.06 0.93 7.40 -51.93 -0.38 0.54 16 41 H 0.07 1.16 7.41 -51.93 -0.38 0.78 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.07 1.48 8.09 -51.93 -0.42 1.06 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 47 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 48 H 0.11 2.94 5.82 -51.93 -0.30 2.64 16 49 H 0.07 1.38 7.65 -51.93 -0.40 0.99 16 50 H 0.07 1.35 6.82 -51.93 -0.35 1.00 16 LS Contribution 398.35 15.07 6.00 6.00 Total: -1.00 -35.55 398.35 -8.84 -44.39 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -8.39 Total: 4.68 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: -0.20 Total: 7.82 kcal Atomic # 7 Polarization: -56.54 SS G_CDS: -0.50 Total: -57.04 kcal Atomic # 8 Polarization: -21.63 SS G_CDS: -0.72 Total: -22.36 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.55 -8.84 -44.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700864340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.291 kcal (2) G-P(sol) polarization free energy of solvation -35.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds