Wall clock time and date at job start Sat Apr 11 2020 05:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42906 * 114.00168 * 2 1 4 4 C 1.50695 * 109.47045 * 180.02562 * 3 2 1 5 5 O 1.21274 * 120.00413 * 0.27121 * 4 3 2 6 6 N 1.34784 * 119.99635 * 180.02562 * 4 3 2 7 7 C 1.46499 * 119.99971 * 179.97438 * 6 4 3 8 8 C 1.52992 * 109.47267 * 180.02562 * 7 6 4 9 9 C 1.50700 * 109.47257 * 180.02562 * 8 7 6 10 10 O 1.21279 * 120.00113 * 359.97438 * 9 8 7 11 11 N 1.34774 * 119.99956 * 179.97438 * 9 8 7 12 12 C 1.46507 * 119.99765 * 179.97438 * 11 9 8 13 13 C 1.53575 * 112.24243 * 300.34875 * 12 11 9 14 14 C 1.54176 * 106.70175 * 237.98090 * 13 12 11 15 15 C 1.54766 * 104.36306 * 335.87152 * 14 13 12 16 16 C 1.54774 * 103.21018 * 37.32783 * 15 14 13 17 17 H 1.08996 * 111.86934 * 84.92306 * 16 15 14 18 18 N 1.46980 * 108.68152 * 209.79565 * 16 15 14 19 19 C 1.36939 * 125.58153 * 294.10404 * 18 16 15 20 20 H 1.07990 * 119.99814 * 0.02562 * 19 18 16 21 21 C 1.38812 * 120.00051 * 180.02562 * 19 18 16 22 22 N 1.31620 * 119.99955 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00156 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.47212 * 89.99468 * 23 21 19 25 25 H 1.48497 * 109.47545 * 209.99788 * 23 21 19 26 26 H 1.48507 * 109.47059 * 330.00067 * 23 21 19 27 27 C 1.47379 * 108.83998 * 114.12701 * 18 16 15 28 28 C 1.54863 * 104.81942 * 335.30951 * 27 18 16 29 29 H 1.08999 * 109.47109 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46993 * 300.00027 * 1 2 3 31 31 H 1.08995 * 109.47099 * 60.00204 * 1 2 3 32 32 H 1.09005 * 109.47002 * 59.99866 * 3 2 1 33 33 H 1.09002 * 109.46834 * 300.00233 * 3 2 1 34 34 H 0.96999 * 120.00044 * 0.02562 * 6 4 3 35 35 H 1.09004 * 109.47024 * 300.00310 * 7 6 4 36 36 H 1.09005 * 109.47136 * 59.99926 * 7 6 4 37 37 H 1.09004 * 109.47330 * 300.00096 * 8 7 6 38 38 H 1.09005 * 109.47124 * 59.99892 * 8 7 6 39 39 H 0.96999 * 120.00050 * 0.02562 * 11 9 8 40 40 H 1.08999 * 110.02029 * 358.13080 * 13 12 11 41 41 H 1.09001 * 110.01901 * 119.52387 * 13 12 11 42 42 H 1.08998 * 110.80794 * 216.93365 * 14 13 12 43 43 H 1.09001 * 110.09954 * 94.45947 * 14 13 12 44 44 H 1.09002 * 110.66713 * 278.89756 * 15 14 13 45 45 H 1.08996 * 110.66668 * 155.75935 * 15 14 13 46 46 H 0.96996 * 119.99870 * 179.97438 * 22 21 19 47 47 H 1.08994 * 110.36702 * 94.14495 * 27 18 16 48 48 H 1.08994 * 110.36467 * 216.36218 * 27 18 16 49 49 H 1.09001 * 110.97138 * 278.95232 * 28 27 18 50 50 H 1.08999 * 110.97276 * 155.19264 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 -0.0006 5 8 4.0341 0.0916 -0.0060 6 7 4.2765 2.2969 -0.0002 7 6 5.7369 2.1812 -0.0003 8 6 6.3592 3.5789 0.0009 9 6 7.8615 3.4599 0.0002 10 8 8.3831 2.3650 -0.0006 11 7 8.6254 4.5702 0.0005 12 6 10.0859 4.4545 0.0004 13 6 10.6087 3.6923 1.2268 14 6 11.5792 4.6414 1.9579 15 6 12.0581 5.6212 0.8597 16 6 10.7888 5.8375 0.0008 17 1 10.1493 6.6190 0.4111 18 7 11.1986 6.1139 -1.3834 19 6 11.8867 7.2203 -1.8049 20 1 12.1739 7.9807 -1.0940 21 6 12.2149 7.3643 -3.1460 22 7 11.8652 6.4372 -4.0123 23 14 13.1528 8.8739 -3.7211 24 1 14.6120 8.6074 -3.6487 25 1 12.7757 9.1867 -5.1229 26 1 12.8166 10.0277 -2.8487 27 6 10.7473 5.0055 -2.2437 28 6 10.6236 3.7903 -1.2917 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8593 3.1726 0.0009 35 1 6.0585 1.6399 0.8895 36 1 6.0585 1.6406 -0.8905 37 1 6.0376 4.1206 -0.8887 38 1 6.0375 4.1191 0.8913 39 1 8.2082 5.4459 0.0015 40 1 9.7781 3.4154 1.8761 41 1 11.1483 2.7999 0.9095 42 1 12.4232 4.0892 2.3710 43 1 11.0536 5.1796 2.7467 44 1 12.8537 5.1729 0.2645 45 1 12.3891 6.5613 1.3008 46 1 12.0942 6.5381 -4.9495 47 1 9.7798 5.2397 -2.6876 48 1 11.4831 4.8061 -3.0226 49 1 11.5964 3.3303 -1.1180 50 1 9.9128 3.0611 -1.6803 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700864340.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:36 Heat of formation + Delta-G solvation = -116.703457 kcal Electronic energy + Delta-G solvation = -29971.948283 eV Core-core repulsion = 25805.810950 eV Total energy + Delta-G solvation = -4166.137333 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.62741 -40.83608 -39.61651 -38.41986 -36.27990 -35.98228 -34.73515 -33.34513 -32.45776 -31.32201 -29.59906 -28.41286 -27.60470 -26.74705 -25.72680 -24.61594 -22.53636 -21.88934 -21.54756 -20.80420 -20.18508 -18.89300 -18.51955 -18.00666 -17.65716 -17.38679 -17.13114 -16.85039 -16.72400 -16.24710 -15.89680 -15.59347 -15.39169 -15.28908 -15.13400 -14.58948 -14.52835 -14.32105 -14.03758 -13.83740 -13.48920 -13.22265 -13.11852 -12.94676 -12.92710 -12.73552 -12.65781 -12.43813 -12.33690 -12.28168 -12.01671 -11.89442 -11.68558 -11.56082 -11.46226 -11.23669 -11.01689 -10.74648 -10.71078 -10.67977 -10.19806 -9.91102 -8.84931 -7.72529 -5.17198 1.48657 1.50060 1.54426 1.58237 1.68442 1.72783 2.34195 2.52420 3.16325 3.36640 3.39642 3.63094 3.65595 3.82300 3.96707 3.97892 4.03313 4.09205 4.22744 4.31219 4.38292 4.42262 4.48475 4.52150 4.54420 4.60127 4.60860 4.68678 4.82467 4.85961 4.89520 4.92034 4.94532 5.00519 5.10119 5.18727 5.23802 5.32581 5.33563 5.49498 5.52890 5.66514 5.72993 5.86457 6.06352 6.32630 6.53873 6.66174 7.13277 7.22480 7.35231 7.82039 8.45892 9.28654 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.017931 B = 0.002122 C = 0.001976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.177413 B =13193.834159 C =14166.409899 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.047 3.953 4 C 0.503 3.497 5 O -0.582 6.582 6 N -0.709 5.709 7 C 0.142 3.858 8 C -0.136 4.136 9 C 0.511 3.489 10 O -0.576 6.576 11 N -0.700 5.700 12 C 0.171 3.829 13 C -0.104 4.104 14 C -0.110 4.110 15 C -0.127 4.127 16 C 0.155 3.845 17 H 0.063 0.937 18 N -0.610 5.610 19 C -0.221 4.221 20 H 0.086 0.914 21 C -0.072 4.072 22 N -0.952 5.952 23 Si 0.976 3.024 24 H -0.290 1.290 25 H -0.300 1.300 26 H -0.267 1.267 27 C 0.163 3.837 28 C -0.131 4.131 29 H 0.090 0.910 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.116 0.884 33 H 0.113 0.887 34 H 0.424 0.576 35 H 0.056 0.944 36 H 0.046 0.954 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.412 0.588 40 H 0.069 0.931 41 H 0.054 0.946 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.045 0.955 45 H 0.067 0.933 46 H 0.243 0.757 47 H -0.013 1.013 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.250 -1.838 13.105 25.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.032 4.032 4 C 0.290 3.710 5 O -0.461 6.461 6 N -0.364 5.364 7 C 0.018 3.982 8 C -0.176 4.176 9 C 0.299 3.701 10 O -0.455 6.455 11 N -0.351 5.351 12 C 0.084 3.916 13 C -0.143 4.143 14 C -0.148 4.148 15 C -0.167 4.167 16 C 0.049 3.951 17 H 0.081 0.919 18 N -0.335 5.335 19 C -0.350 4.350 20 H 0.104 0.896 21 C -0.264 4.264 22 N -0.602 5.602 23 Si 0.805 3.195 24 H -0.218 1.218 25 H -0.226 1.226 26 H -0.191 1.191 27 C 0.038 3.962 28 C -0.170 4.170 29 H 0.109 0.891 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.262 0.738 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.249 0.751 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.093 0.907 43 H 0.102 0.898 44 H 0.064 0.936 45 H 0.086 0.914 46 H 0.053 0.947 47 H 0.005 0.995 48 H 0.087 0.913 49 H 0.078 0.922 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -20.343 -3.440 12.910 24.338 hybrid contribution 0.369 1.365 -1.099 1.791 sum -19.974 -2.075 11.811 23.297 Atomic orbital electron populations 1.23028 0.78187 1.04071 1.01787 1.87974 1.22251 1.27111 1.95838 1.22403 0.88296 0.86717 1.05775 1.21115 0.90570 0.83958 0.75400 1.90745 1.75989 1.29054 1.50297 1.45626 1.06102 1.09510 1.75181 1.20768 0.79105 0.96586 1.01762 1.21742 0.89543 0.98038 1.08242 1.20968 0.90416 0.83700 0.75056 1.90731 1.76018 1.27979 1.50821 1.45821 1.05382 1.09555 1.74363 1.21421 0.79889 0.95418 0.94900 1.22163 0.98969 0.97798 0.95341 1.22294 0.98651 0.96633 0.97243 1.22822 0.97795 0.99310 0.96745 1.22038 0.94343 0.93070 0.85687 0.91924 1.44697 1.64469 1.21288 1.03000 1.19403 1.26234 0.97000 0.92388 0.89599 1.25593 1.02981 1.01413 0.96367 1.70064 1.52921 1.35348 1.01871 0.85099 0.78020 0.79422 0.76920 1.21780 1.22643 1.19123 1.21613 0.96410 0.85102 0.93098 1.23113 0.99629 0.97580 0.96695 0.89104 0.91932 0.92143 0.86610 0.86969 0.73757 0.92598 0.93588 0.85623 0.84177 0.75088 0.91183 0.92692 0.90720 0.89823 0.93603 0.91433 0.94679 0.99534 0.91328 0.92241 0.92254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -7.96 10.24 -129.94 -1.33 -9.29 16 3 C 0.05 0.56 6.42 71.23 0.46 1.02 16 4 C 0.50 10.56 7.91 87.65 0.69 11.26 16 5 O -0.58 -20.01 16.50 16.02 0.26 -19.74 16 6 N -0.71 -10.11 5.56 -463.07 -2.57 -12.68 16 7 C 0.14 2.97 4.96 86.38 0.43 3.40 16 8 C -0.14 -2.02 5.81 29.85 0.17 -1.85 16 9 C 0.51 13.41 6.98 87.66 0.61 14.02 16 10 O -0.58 -20.39 13.86 -3.03 -0.04 -20.43 16 11 N -0.70 -18.71 5.23 -415.79 -2.18 -20.89 16 12 C 0.17 5.73 0.73 5.18 0.00 5.74 16 13 C -0.10 -3.12 5.25 31.19 0.16 -2.96 16 14 C -0.11 -2.90 6.83 31.59 0.22 -2.68 16 15 C -0.13 -4.26 6.22 31.80 0.20 -4.07 16 16 C 0.16 5.74 3.65 46.24 0.17 5.91 16 17 H 0.06 2.14 7.99 -2.39 -0.02 2.12 16 18 N -0.61 -29.40 3.03 -663.70 -2.01 -31.41 16 19 C -0.22 -11.68 10.01 84.03 0.84 -10.84 16 20 H 0.09 4.29 7.83 -2.92 -0.02 4.26 16 21 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 22 N -0.95 -56.31 10.07 21.65 0.22 -56.09 16 23 Si 0.98 44.70 29.55 68.60 2.03 46.73 16 24 H -0.29 -13.26 7.11 99.48 0.71 -12.55 16 25 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 26 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 27 C 0.16 8.10 5.91 86.85 0.51 8.61 16 28 C -0.13 -5.42 5.77 31.89 0.18 -5.24 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 32 H 0.12 0.54 8.14 -2.38 -0.02 0.52 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.42 1.88 8.47 -92.71 -0.79 1.09 16 35 H 0.06 1.43 8.10 -2.38 -0.02 1.41 16 36 H 0.05 1.28 8.10 -2.38 -0.02 1.26 16 37 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.14 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.41 8.86 8.50 -92.71 -0.79 8.07 16 40 H 0.07 1.99 7.40 -2.39 -0.02 1.97 16 41 H 0.05 1.81 7.41 -2.39 -0.02 1.80 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.80 8.09 -2.39 -0.02 1.78 16 45 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 46 H 0.24 14.16 8.31 -92.71 -0.77 13.39 16 47 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 48 H 0.07 3.98 5.82 -2.39 -0.01 3.97 16 49 H 0.06 2.53 7.65 -2.39 -0.02 2.51 16 50 H 0.06 2.52 6.82 -2.39 -0.02 2.51 16 Total: -1.00 -84.16 398.35 0.12 -84.03 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -0.62 Total: 19.46 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: 6.37 Total: 20.32 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -6.54 Total: -121.07 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -1.11 Total: -49.46 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -84.16 0.12 -84.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700864340.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.669 kcal (2) G-P(sol) polarization free energy of solvation -84.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds