Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.50701 * 109.47103 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99829 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00239 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99910 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46876 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47206 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99829 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00239 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.51227 * 111.06716 * 291.65807 * 12 11 9 14 14 C 1.55051 * 104.92406 * 275.55554 * 13 12 11 15 15 C 1.56274 * 105.91727 * 353.33959 * 14 13 12 16 16 C 1.50519 * 101.75765 * 335.35963 * 15 14 13 17 17 H 1.09000 * 107.74362 * 293.22507 * 16 15 14 18 18 N 1.42701 * 128.16478 * 161.32514 * 16 15 14 19 19 C 1.36937 * 127.10483 * 28.27689 * 18 16 15 20 20 H 1.08010 * 119.99649 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00497 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99629 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00230 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47175 * 60.00543 * 23 21 19 25 25 H 1.48508 * 109.47017 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47337 * 300.00292 * 23 21 19 27 27 C 1.49288 * 105.79455 * 208.27184 * 18 16 15 28 28 C 1.52129 * 111.09379 * 71.68790 * 12 11 9 29 29 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 30 30 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 32 32 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 33 33 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 34 34 H 0.96993 * 119.99716 * 359.97438 * 6 4 3 35 35 H 1.08997 * 109.47047 * 299.99928 * 7 6 4 36 36 H 1.09003 * 109.47306 * 59.99976 * 7 6 4 37 37 H 1.08997 * 109.47609 * 300.00056 * 8 7 6 38 38 H 1.09003 * 109.46787 * 60.00130 * 8 7 6 39 39 H 0.97001 * 119.99932 * 359.97438 * 11 9 8 40 40 H 1.08998 * 110.41176 * 34.89837 * 13 12 11 41 41 H 1.09007 * 110.41155 * 157.33229 * 13 12 11 42 42 H 1.09001 * 110.48330 * 234.05511 * 14 13 12 43 43 H 1.09002 * 109.84474 * 112.27827 * 14 13 12 44 44 H 1.08997 * 110.97439 * 217.24392 * 15 14 13 45 45 H 1.09003 * 111.00296 * 93.48925 * 15 14 13 46 46 H 0.97000 * 120.00324 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.05108 * 127.92365 * 27 18 16 48 48 H 1.09002 * 110.05189 * 249.39400 * 27 18 16 49 49 H 1.09004 * 111.14982 * 191.86109 * 28 12 11 50 50 H 1.09000 * 111.15124 * 316.08202 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2765 2.2969 0.0013 7 6 5.7369 2.1812 0.0013 8 6 6.3591 3.5789 0.0014 9 6 7.8614 3.4600 0.0021 10 8 8.3831 2.3650 0.0020 11 7 8.6254 4.5703 0.0029 12 6 10.0858 4.4547 0.0030 13 6 10.5864 3.8918 1.3143 14 6 10.6915 5.1159 2.2601 15 6 10.4006 6.3692 1.3731 16 6 10.7768 5.8698 0.0039 17 1 11.8534 5.6993 -0.0033 18 7 10.4030 6.4072 -1.2642 19 6 10.1022 7.7116 -1.5524 20 1 10.1350 8.4583 -0.7727 21 6 9.7551 8.0744 -2.8465 22 7 9.7147 7.1643 -3.7966 23 14 9.3441 9.8536 -3.2395 24 1 10.5148 10.7125 -2.9281 25 1 9.0082 9.9774 -4.6808 26 1 8.1820 10.2854 -2.4220 27 6 10.4077 5.2536 -2.2117 28 6 10.5966 3.9677 -1.3447 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.8593 3.1725 0.0009 35 1 6.0584 1.6398 0.8910 36 1 6.0586 1.6407 -0.8889 37 1 6.0376 4.1199 -0.8885 38 1 6.0374 4.1197 0.8915 39 1 8.2082 5.4461 0.0026 40 1 9.8812 3.1597 1.7077 41 1 11.5703 3.4410 1.1836 42 1 11.6918 5.1825 2.6880 43 1 9.9477 5.0359 3.0528 44 1 11.0284 7.2100 1.6677 45 1 9.3455 6.6398 1.4133 46 1 9.4718 7.4176 -4.7009 47 1 9.4599 5.2067 -2.7482 48 1 11.2324 5.3529 -2.9174 49 1 11.6471 3.6827 -1.2876 50 1 9.9882 3.1459 -1.7223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700864343.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -78.163857 kcal Electronic energy + Delta-G solvation = -30416.169443 eV Core-core repulsion = 26251.703313 eV Total energy + Delta-G solvation = -4164.466130 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.55265 -39.92315 -38.34474 -37.68541 -35.19259 -34.48752 -33.08124 -31.88652 -31.26519 -29.87512 -28.84295 -26.99450 -26.36620 -25.76554 -24.14923 -23.62802 -21.00268 -20.66045 -20.39143 -19.59804 -18.72372 -17.65145 -17.10219 -16.70270 -16.67312 -16.50955 -15.80936 -15.75092 -15.36275 -14.86707 -14.72015 -14.58548 -14.38880 -14.01222 -13.87971 -13.50767 -13.22467 -13.14945 -12.63667 -12.52414 -12.37434 -11.94811 -11.92627 -11.83458 -11.57457 -11.45013 -11.31402 -11.06257 -10.95167 -10.83174 -10.52222 -10.35467 -10.18565 -10.08722 -10.01828 -9.99279 -9.74394 -9.58059 -9.24831 -9.16238 -8.72803 -8.49047 -6.92980 -5.81112 -3.16174 2.43010 2.52676 2.99688 3.31960 3.37767 3.39025 3.54689 3.85916 4.39063 4.43824 4.59361 4.68407 4.76122 4.77455 4.93424 4.97787 5.02618 5.05842 5.21386 5.24058 5.28743 5.41696 5.45525 5.56221 5.71103 5.79462 5.83196 5.92662 5.94038 5.96168 6.12588 6.20411 6.22638 6.29200 6.34916 6.41075 6.47270 6.59480 6.63137 6.78849 6.87354 7.17017 7.26404 7.47032 7.54216 7.71356 8.01491 8.03413 8.13308 8.65572 9.06595 9.73119 10.42495 11.30799 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.002630 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.322990 B =10642.084272 C =12111.644759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.044 3.956 4 C 0.511 3.489 5 O -0.516 6.516 6 N -0.731 5.731 7 C 0.139 3.861 8 C -0.155 4.155 9 C 0.517 3.483 10 O -0.546 6.546 11 N -0.688 5.688 12 C 0.133 3.867 13 C -0.112 4.112 14 C -0.116 4.116 15 C -0.114 4.114 16 C 0.158 3.842 17 H 0.022 0.978 18 N -0.584 5.584 19 C -0.232 4.232 20 H 0.078 0.922 21 C -0.004 4.004 22 N -0.918 5.918 23 Si 0.910 3.090 24 H -0.285 1.285 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.179 3.821 28 C -0.139 4.139 29 H 0.044 0.956 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.400 0.600 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.403 0.597 40 H 0.070 0.930 41 H 0.068 0.932 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.063 0.937 45 H 0.064 0.936 46 H 0.254 0.746 47 H 0.065 0.935 48 H 0.035 0.965 49 H 0.064 0.936 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.297 -5.612 10.283 17.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.284 6.284 3 C -0.037 4.037 4 C 0.296 3.704 5 O -0.390 6.390 6 N -0.385 5.385 7 C 0.015 3.985 8 C -0.196 4.196 9 C 0.302 3.698 10 O -0.425 6.425 11 N -0.339 5.339 12 C 0.045 3.955 13 C -0.150 4.150 14 C -0.155 4.155 15 C -0.153 4.153 16 C 0.047 3.953 17 H 0.039 0.961 18 N -0.307 5.307 19 C -0.360 4.360 20 H 0.096 0.904 21 C -0.201 4.201 22 N -0.565 5.565 23 Si 0.740 3.260 24 H -0.212 1.212 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.055 3.945 28 C -0.178 4.178 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.062 0.938 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.234 0.766 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.239 0.761 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.077 0.923 44 H 0.082 0.918 45 H 0.083 0.917 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.053 0.947 49 H 0.083 0.917 50 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.467 -7.217 10.048 17.563 hybrid contribution -0.826 2.263 -0.401 2.442 sum -13.293 -4.955 9.647 17.156 Atomic orbital electron populations 1.22849 0.80329 1.03379 1.00136 1.88030 1.19811 1.25187 1.95422 1.22242 0.91671 0.87063 1.02687 1.20221 0.88612 0.84630 0.76987 1.90768 1.74560 1.26444 1.47195 1.45886 1.07442 1.08690 1.76468 1.21039 0.77316 0.95949 1.04166 1.21806 0.94112 0.98593 1.05054 1.20096 0.88384 0.84733 0.76600 1.90699 1.74911 1.26525 1.50337 1.45699 1.06363 1.08569 1.73235 1.21504 0.79687 1.00448 0.93871 1.21752 1.01287 0.97268 0.94729 1.22710 1.00917 0.94222 0.97623 1.21842 1.01300 0.96924 0.95206 1.20826 0.96131 0.90403 0.87897 0.96132 1.43659 1.80121 1.04656 1.02295 1.18959 1.39953 0.82949 0.94163 0.90380 1.24798 1.01730 0.97681 0.95875 1.69910 1.53753 1.31556 1.01246 0.86244 0.78212 0.84362 0.77148 1.21185 1.21659 1.21209 1.22009 1.01274 0.81194 0.90032 1.22783 0.99998 0.99677 0.95325 0.93736 0.89058 0.93797 0.90100 0.90197 0.76583 0.90476 0.90325 0.88118 0.88608 0.76103 0.91147 0.91300 0.91930 0.92349 0.91838 0.91695 0.93593 0.91717 0.94718 0.91699 0.91343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.37 -4.00 10.24 -55.14 -0.56 -4.56 16 3 C 0.04 0.36 6.42 36.01 0.23 0.59 16 4 C 0.51 6.11 7.91 -10.98 -0.09 6.02 16 5 O -0.52 -8.95 16.50 -14.36 -0.24 -9.19 16 6 N -0.73 -6.94 5.56 -60.29 -0.33 -7.27 16 7 C 0.14 1.69 4.96 -4.04 -0.02 1.67 16 8 C -0.16 -1.70 5.81 -27.88 -0.16 -1.86 16 9 C 0.52 7.99 7.14 -10.98 -0.08 7.91 16 10 O -0.55 -10.20 14.13 5.55 0.08 -10.12 16 11 N -0.69 -11.10 4.38 -46.58 -0.20 -11.31 16 12 C 0.13 2.32 0.42 -130.71 -0.05 2.27 16 13 C -0.11 -1.72 6.01 -26.54 -0.16 -1.87 16 14 C -0.12 -1.58 6.91 -23.89 -0.17 -1.74 16 15 C -0.11 -1.80 6.46 -26.21 -0.17 -1.97 16 16 C 0.16 3.02 2.62 -68.72 -0.18 2.84 16 17 H 0.02 0.43 7.98 -51.93 -0.41 0.02 16 18 N -0.58 -13.56 3.12 -162.69 -0.51 -14.06 16 19 C -0.23 -5.91 10.29 -15.06 -0.15 -6.07 16 20 H 0.08 1.92 7.83 -52.48 -0.41 1.51 16 21 C 0.00 -0.10 5.49 -17.43 -0.10 -0.20 16 22 N -0.92 -25.55 10.55 55.49 0.59 -24.97 16 23 Si 0.91 20.85 29.55 -169.99 -5.02 15.83 16 24 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -6.38 7.11 56.52 0.40 -5.97 16 27 C 0.18 4.15 5.33 -0.76 0.00 4.15 16 28 C -0.14 -2.71 6.22 -25.44 -0.16 -2.87 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 34 H 0.40 2.30 8.47 -40.82 -0.35 1.96 16 35 H 0.08 1.07 8.10 -51.93 -0.42 0.65 16 36 H 0.08 1.15 8.10 -51.93 -0.42 0.73 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 6.44 7.81 -40.82 -0.32 6.12 16 40 H 0.07 1.13 6.84 -51.93 -0.36 0.78 16 41 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 42 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.06 1.00 7.38 -51.93 -0.38 0.62 16 46 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 47 H 0.06 1.67 7.05 -51.93 -0.37 1.30 16 48 H 0.03 0.89 7.98 -51.93 -0.41 0.48 16 49 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 50 H 0.07 1.38 7.18 -51.93 -0.37 1.01 16 LS Contribution 399.07 15.07 6.01 6.01 Total: -1.00 -34.23 399.07 -8.77 -43.00 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: -8.43 Total: 6.48 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: -0.15 Total: 10.16 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.46 Total: -57.61 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.72 Total: -23.87 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -34.23 -8.77 -43.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700864343.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.166 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.394 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds