Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99742 * 2 1 4 4 C 1.50701 * 109.47103 * 179.97438 * 3 2 1 5 5 O 1.21286 * 119.99829 * 0.02562 * 4 3 2 6 6 N 1.34779 * 120.00239 * 180.02562 * 4 3 2 7 7 C 1.46498 * 119.99910 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.46876 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47206 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99829 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00239 * 180.02562 * 9 8 7 12 12 C 1.46498 * 120.00109 * 180.02562 * 11 9 8 13 13 C 1.51227 * 111.06716 * 291.65807 * 12 11 9 14 14 C 1.55051 * 104.92406 * 275.55554 * 13 12 11 15 15 C 1.56274 * 105.91727 * 353.33959 * 14 13 12 16 16 C 1.50519 * 101.75765 * 335.35963 * 15 14 13 17 17 H 1.09000 * 107.74362 * 293.22507 * 16 15 14 18 18 N 1.42701 * 128.16478 * 161.32514 * 16 15 14 19 19 C 1.36937 * 127.10483 * 28.27689 * 18 16 15 20 20 H 1.08010 * 119.99649 * 359.97438 * 19 18 16 21 21 C 1.38810 * 120.00497 * 179.97438 * 19 18 16 22 22 N 1.31619 * 119.99629 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 120.00230 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47175 * 60.00543 * 23 21 19 25 25 H 1.48508 * 109.47017 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47337 * 300.00292 * 23 21 19 27 27 C 1.49288 * 105.79455 * 208.27184 * 18 16 15 28 28 C 1.52129 * 111.09379 * 71.68790 * 12 11 9 29 29 H 1.09001 * 109.47103 * 60.00503 * 1 2 3 30 30 H 1.09004 * 109.47054 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47187 * 300.00063 * 1 2 3 32 32 H 1.08997 * 109.47450 * 299.99752 * 3 2 1 33 33 H 1.09003 * 109.47048 * 59.99889 * 3 2 1 34 34 H 0.96993 * 119.99716 * 359.97438 * 6 4 3 35 35 H 1.08997 * 109.47047 * 299.99928 * 7 6 4 36 36 H 1.09003 * 109.47306 * 59.99976 * 7 6 4 37 37 H 1.08997 * 109.47609 * 300.00056 * 8 7 6 38 38 H 1.09003 * 109.46787 * 60.00130 * 8 7 6 39 39 H 0.97001 * 119.99932 * 359.97438 * 11 9 8 40 40 H 1.08998 * 110.41176 * 34.89837 * 13 12 11 41 41 H 1.09007 * 110.41155 * 157.33229 * 13 12 11 42 42 H 1.09001 * 110.48330 * 234.05511 * 14 13 12 43 43 H 1.09002 * 109.84474 * 112.27827 * 14 13 12 44 44 H 1.08997 * 110.97439 * 217.24392 * 15 14 13 45 45 H 1.09003 * 111.00296 * 93.48925 * 15 14 13 46 46 H 0.97000 * 120.00324 * 179.97438 * 22 21 19 47 47 H 1.09005 * 110.05108 * 127.92365 * 27 18 16 48 48 H 1.09002 * 110.05189 * 249.39400 * 27 18 16 49 49 H 1.09004 * 111.14982 * 191.86109 * 28 12 11 50 50 H 1.09000 * 111.15124 * 316.08202 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0006 6 7 4.2765 2.2969 0.0013 7 6 5.7369 2.1812 0.0013 8 6 6.3591 3.5789 0.0014 9 6 7.8614 3.4600 0.0021 10 8 8.3831 2.3650 0.0020 11 7 8.6254 4.5703 0.0029 12 6 10.0858 4.4547 0.0030 13 6 10.5864 3.8918 1.3143 14 6 10.6915 5.1159 2.2601 15 6 10.4006 6.3692 1.3731 16 6 10.7768 5.8698 0.0039 17 1 11.8534 5.6993 -0.0033 18 7 10.4030 6.4072 -1.2642 19 6 10.1022 7.7116 -1.5524 20 1 10.1350 8.4583 -0.7727 21 6 9.7551 8.0744 -2.8465 22 7 9.7147 7.1643 -3.7966 23 14 9.3441 9.8536 -3.2395 24 1 10.5148 10.7125 -2.9281 25 1 9.0082 9.9774 -4.6808 26 1 8.1820 10.2854 -2.4220 27 6 10.4077 5.2536 -2.2117 28 6 10.5966 3.9677 -1.3447 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6885 1.8464 0.8900 34 1 3.8593 3.1725 0.0009 35 1 6.0584 1.6398 0.8910 36 1 6.0586 1.6407 -0.8889 37 1 6.0376 4.1199 -0.8885 38 1 6.0374 4.1197 0.8915 39 1 8.2082 5.4461 0.0026 40 1 9.8812 3.1597 1.7077 41 1 11.5703 3.4410 1.1836 42 1 11.6918 5.1825 2.6880 43 1 9.9477 5.0359 3.0528 44 1 11.0284 7.2100 1.6677 45 1 9.3455 6.6398 1.4133 46 1 9.4718 7.4176 -4.7009 47 1 9.4599 5.2067 -2.7482 48 1 11.2324 5.3529 -2.9174 49 1 11.6471 3.6827 -1.2876 50 1 9.9882 3.1459 -1.7223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700864343.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -103.364725 kcal Electronic energy + Delta-G solvation = -30417.262235 eV Core-core repulsion = 26251.703313 eV Total energy + Delta-G solvation = -4165.558922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.95491 -40.86828 -39.64491 -38.42166 -36.28885 -36.09588 -34.42951 -33.59212 -32.42172 -31.39013 -29.56983 -28.54011 -27.38824 -26.78178 -25.93679 -24.68964 -22.26309 -21.93402 -21.59015 -21.15673 -20.09834 -18.56406 -18.33474 -18.01512 -17.58188 -17.39651 -17.33604 -16.76309 -16.39054 -16.29547 -15.95535 -15.78990 -15.66052 -15.34134 -15.26108 -14.72545 -14.32161 -14.11695 -14.05973 -14.01311 -13.49162 -13.16391 -13.04313 -12.95065 -12.92897 -12.83407 -12.60868 -12.42222 -12.34266 -12.17032 -12.09106 -12.03267 -11.79021 -11.54279 -11.32737 -11.08303 -10.96195 -10.75323 -10.70532 -10.55312 -10.20684 -9.86037 -8.85621 -7.81323 -5.17423 1.50274 1.52629 1.53415 1.58637 1.70388 1.78033 2.43601 2.53135 3.11444 3.16216 3.38704 3.63062 3.75010 3.82177 3.91939 4.02811 4.07164 4.12282 4.21819 4.30092 4.31725 4.41340 4.43553 4.51920 4.54317 4.59522 4.59752 4.65822 4.83585 4.84783 4.88773 4.92764 4.96732 5.02019 5.08972 5.13477 5.25216 5.31224 5.31697 5.50991 5.57256 5.62284 5.70100 5.83850 6.05406 6.19859 6.52740 6.73791 7.06419 7.20785 7.40011 7.79172 8.51875 9.30194 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.002630 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.322990 B =10642.084272 C =12111.644759 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.048 3.952 4 C 0.503 3.497 5 O -0.581 6.581 6 N -0.710 5.710 7 C 0.147 3.853 8 C -0.139 4.139 9 C 0.512 3.488 10 O -0.582 6.582 11 N -0.688 5.688 12 C 0.140 3.860 13 C -0.108 4.108 14 C -0.102 4.102 15 C -0.108 4.108 16 C 0.147 3.853 17 H 0.011 0.989 18 N -0.595 5.595 19 C -0.230 4.230 20 H 0.090 0.910 21 C -0.062 4.062 22 N -0.952 5.952 23 Si 0.974 3.026 24 H -0.283 1.283 25 H -0.303 1.303 26 H -0.270 1.270 27 C 0.192 3.808 28 C -0.130 4.130 29 H 0.059 0.941 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.423 0.577 35 H 0.058 0.942 36 H 0.046 0.954 37 H 0.116 0.884 38 H 0.135 0.865 39 H 0.406 0.594 40 H 0.065 0.935 41 H 0.072 0.928 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.245 0.755 47 H 0.034 0.966 48 H -0.003 1.003 49 H 0.073 0.927 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.127 -3.717 12.803 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.032 4.032 4 C 0.290 3.710 5 O -0.460 6.460 6 N -0.365 5.365 7 C 0.022 3.978 8 C -0.179 4.179 9 C 0.299 3.701 10 O -0.463 6.463 11 N -0.338 5.338 12 C 0.052 3.948 13 C -0.147 4.147 14 C -0.140 4.140 15 C -0.147 4.147 16 C 0.038 3.962 17 H 0.028 0.972 18 N -0.318 5.318 19 C -0.359 4.359 20 H 0.107 0.893 21 C -0.255 4.255 22 N -0.600 5.600 23 Si 0.803 3.197 24 H -0.210 1.210 25 H -0.230 1.230 26 H -0.196 1.196 27 C 0.067 3.933 28 C -0.169 4.169 29 H 0.078 0.922 30 H 0.110 0.890 31 H 0.081 0.919 32 H 0.129 0.871 33 H 0.134 0.866 34 H 0.261 0.739 35 H 0.077 0.923 36 H 0.064 0.936 37 H 0.134 0.866 38 H 0.153 0.847 39 H 0.242 0.758 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.099 0.901 43 H 0.098 0.902 44 H 0.088 0.912 45 H 0.089 0.911 46 H 0.054 0.946 47 H 0.052 0.948 48 H 0.015 0.985 49 H 0.092 0.908 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.327 -5.259 12.618 19.802 hybrid contribution -0.209 1.646 -1.204 2.050 sum -14.536 -3.613 11.414 18.831 Atomic orbital electron populations 1.23035 0.78182 1.04106 1.01761 1.87972 1.22251 1.26991 1.95833 1.22388 0.88281 0.86759 1.05730 1.21107 0.90558 0.83908 0.75391 1.90739 1.75990 1.28941 1.50351 1.45660 1.06170 1.09547 1.75139 1.20734 0.79044 0.96257 1.01772 1.21725 0.90410 0.98116 1.07606 1.20817 0.90173 0.83790 0.75298 1.90690 1.75995 1.27794 1.51784 1.45697 1.05807 1.08992 1.73331 1.21418 0.80685 0.99025 0.93688 1.21740 1.01217 0.98107 0.93592 1.22641 1.02782 0.91559 0.97045 1.21848 1.01752 0.98178 0.92872 1.21015 0.95576 0.91546 0.88057 0.97206 1.43760 1.79961 1.04098 1.04018 1.19353 1.38159 0.84105 0.94282 0.89268 1.25565 1.02699 1.01243 0.96004 1.70133 1.55547 1.33259 1.01107 0.85224 0.78284 0.80048 0.76163 1.20981 1.22971 1.19579 1.21665 0.98071 0.83349 0.90187 1.22635 1.00598 0.97331 0.96320 0.92206 0.88989 0.91948 0.87078 0.86633 0.73890 0.92339 0.93589 0.86599 0.84682 0.75771 0.91580 0.90898 0.90118 0.90169 0.91207 0.91116 0.94606 0.94800 0.98468 0.90805 0.92375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -8.51 10.24 -129.94 -1.33 -9.84 16 3 C 0.05 0.66 6.42 71.24 0.46 1.12 16 4 C 0.50 11.66 7.91 87.66 0.69 12.35 16 5 O -0.58 -20.93 16.50 15.99 0.26 -20.67 16 6 N -0.71 -12.29 5.56 -463.06 -2.57 -14.86 16 7 C 0.15 3.52 4.96 86.38 0.43 3.95 16 8 C -0.14 -2.75 5.81 29.85 0.17 -2.58 16 9 C 0.51 15.41 7.14 87.66 0.63 16.03 16 10 O -0.58 -21.92 14.13 -3.05 -0.04 -21.96 16 11 N -0.69 -21.40 4.38 -419.67 -1.84 -23.24 16 12 C 0.14 4.79 0.42 4.32 0.00 4.79 16 13 C -0.11 -3.10 6.01 30.72 0.18 -2.91 16 14 C -0.10 -2.40 6.91 32.44 0.22 -2.17 16 15 C -0.11 -3.09 6.46 30.93 0.20 -2.89 16 16 C 0.15 5.47 2.62 46.47 0.12 5.60 16 17 H 0.01 0.42 7.98 -2.39 -0.02 0.40 16 18 N -0.60 -27.79 3.12 -668.62 -2.09 -29.88 16 19 C -0.23 -11.65 10.29 84.03 0.86 -10.78 16 20 H 0.09 4.24 7.83 -2.91 -0.02 4.21 16 21 C -0.06 -3.29 5.49 84.86 0.47 -2.82 16 22 N -0.95 -54.71 10.55 21.65 0.23 -54.49 16 23 Si 0.97 42.86 29.55 68.60 2.03 44.88 16 24 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 25 H -0.30 -13.83 7.11 99.48 0.71 -13.13 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 C 0.19 9.29 5.33 86.96 0.46 9.76 16 28 C -0.13 -5.19 6.22 31.43 0.20 -4.99 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.42 3.43 8.47 -92.71 -0.79 2.64 16 35 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 36 H 0.05 1.41 8.10 -2.39 -0.02 1.39 16 37 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.14 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.41 12.24 7.81 -92.71 -0.72 11.52 16 40 H 0.07 1.99 6.84 -2.39 -0.02 1.98 16 41 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 42 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.08 1.59 8.14 -2.39 -0.02 1.58 16 44 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.07 1.95 7.38 -2.39 -0.02 1.93 16 46 H 0.24 13.93 8.31 -92.71 -0.77 13.16 16 47 H 0.03 1.83 7.05 -2.38 -0.02 1.82 16 48 H 0.00 -0.16 7.98 -2.39 -0.02 -0.18 16 49 H 0.07 2.77 8.14 -2.38 -0.02 2.76 16 50 H 0.06 2.43 7.18 -2.39 -0.02 2.42 16 Total: -1.00 -79.84 399.07 0.44 -79.40 By element: Atomic # 1 Polarization: 25.25 SS G_CDS: -0.56 Total: 24.69 kcal Atomic # 6 Polarization: 19.62 SS G_CDS: 6.35 Total: 25.96 kcal Atomic # 7 Polarization: -116.20 SS G_CDS: -6.27 Total: -122.47 kcal Atomic # 8 Polarization: -51.36 SS G_CDS: -1.11 Total: -52.47 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Total: -79.84 0.44 -79.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700864343.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.960 kcal (2) G-P(sol) polarization free energy of solvation -79.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds