Wall clock time and date at job start Sat Apr 11 2020 05:48:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 113.99618 * 2 1 4 4 H 1.08999 * 109.47099 * 30.00476 * 3 2 1 5 5 C 1.50697 * 109.46858 * 269.99862 * 3 2 1 6 6 O 1.21283 * 120.00521 * 354.72876 * 5 3 2 7 7 N 1.34784 * 119.99774 * 174.99982 * 5 3 2 8 8 C 1.46499 * 119.99893 * 179.72962 * 7 5 3 9 9 C 1.53003 * 109.46708 * 180.02562 * 8 7 5 10 10 H 1.09000 * 110.28025 * 52.90952 * 9 8 7 11 11 C 1.54599 * 110.30775 * 290.70861 * 9 8 7 12 12 C 1.54934 * 102.92441 * 219.12991 * 11 9 8 13 13 N 1.48527 * 103.22651 * 37.41688 * 12 11 9 14 14 C 1.46898 * 111.00040 * 200.27963 * 13 12 11 15 15 C 1.50700 * 109.47054 * 287.39293 * 14 13 12 16 16 O 1.21293 * 119.99992 * 0.02562 * 15 14 13 17 17 N 1.34779 * 119.99833 * 179.97438 * 15 14 13 18 18 C 1.37095 * 119.99723 * 180.02562 * 17 15 14 19 19 H 1.08003 * 120.00281 * 359.97438 * 18 17 15 20 20 C 1.38948 * 119.99920 * 180.02562 * 18 17 15 21 21 N 1.31419 * 120.00238 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00114 * 359.97438 * 20 18 17 23 23 H 1.48489 * 109.47513 * 90.00109 * 22 20 18 24 24 H 1.48508 * 109.47061 * 210.00341 * 22 20 18 25 25 H 1.48503 * 109.46846 * 329.99793 * 22 20 18 26 26 C 1.47902 * 105.82334 * 320.79332 * 13 12 11 27 27 C 1.53005 * 109.46764 * 150.00318 * 3 2 1 28 28 C 1.52997 * 117.50119 * 8.74647 * 27 3 2 29 29 C 1.52999 * 117.49919 * 300.08101 * 27 3 2 30 30 H 1.08998 * 109.47448 * 60.00213 * 1 2 3 31 31 H 1.08999 * 109.46800 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.46932 * 299.99376 * 1 2 3 33 33 H 0.97005 * 119.99846 * 359.72750 * 7 5 3 34 34 H 1.08998 * 109.47134 * 299.99552 * 8 7 5 35 35 H 1.08994 * 109.47397 * 59.99843 * 8 7 5 36 36 H 1.09000 * 110.72354 * 337.49659 * 11 9 8 37 37 H 1.09008 * 110.71854 * 100.76955 * 11 9 8 38 38 H 1.09000 * 110.66877 * 278.97839 * 12 11 9 39 39 H 1.08996 * 110.80826 * 155.91615 * 12 11 9 40 40 H 1.08998 * 109.47055 * 47.39811 * 14 13 12 41 41 H 1.09005 * 109.47465 * 167.39757 * 14 13 12 42 42 H 0.96998 * 119.99959 * 0.02562 * 17 15 14 43 43 H 0.96996 * 120.00155 * 180.02562 * 21 20 18 44 44 H 1.09000 * 109.91900 * 265.98279 * 26 13 12 45 45 H 1.09000 * 110.08569 * 144.77344 * 26 13 12 46 46 H 1.08997 * 115.54648 * 154.41980 * 27 3 2 47 47 H 1.09004 * 117.49708 * 359.97438 * 28 27 3 48 48 H 1.08996 * 117.49694 * 145.02035 * 28 27 3 49 49 H 1.08995 * 117.50284 * 214.98321 * 29 27 3 50 50 H 1.09004 * 117.49836 * 359.97438 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5139 5 6 2.2145 1.7644 -1.4208 6 8 1.9838 1.0090 -2.3412 7 7 2.6587 3.0126 -1.6686 8 6 2.8630 3.4567 -3.0496 9 6 3.3676 4.9011 -3.0514 10 1 4.2424 4.9965 -2.4082 11 6 2.2489 5.8608 -2.5851 12 6 2.4337 7.0862 -3.5150 13 7 2.8074 6.4729 -4.8151 14 6 3.4804 7.4483 -5.6832 15 6 2.4724 8.4445 -6.1955 16 8 1.3079 8.3514 -5.8692 17 7 2.8650 9.4395 -7.0155 18 6 1.9480 10.3460 -7.4812 19 1 0.9110 10.2626 -7.1913 20 6 2.3526 11.3715 -8.3270 21 7 1.4736 12.2402 -8.7738 22 14 4.1462 11.5153 -8.8290 23 1 4.3766 10.7352 -10.0712 24 1 4.4794 12.9421 -9.0714 25 1 5.0083 10.9833 -7.7431 26 6 3.7076 5.3466 -4.4858 27 6 3.3589 1.2633 0.7212 28 6 3.9153 -0.1109 1.0990 29 6 3.3638 0.8169 2.1846 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 2.8432 3.6168 -0.9325 34 1 3.5993 2.8144 -3.5327 35 1 1.9197 3.4003 -3.5927 36 1 1.2676 5.4096 -2.7319 37 1 2.3927 6.1429 -1.5420 38 1 3.2337 7.7297 -3.1491 39 1 1.5031 7.6462 -3.6072 40 1 4.2504 7.9700 -5.1148 41 1 3.9390 6.9298 -6.5252 42 1 3.7963 9.5141 -7.2762 43 1 1.7560 12.9558 -9.3645 44 1 4.7460 5.6742 -4.5364 45 1 3.5443 4.5218 -5.1794 46 1 4.0734 2.0322 0.4272 47 1 3.3203 -0.9849 0.8341 48 1 4.9959 -0.2460 1.0539 49 1 4.0818 1.2916 2.8533 50 1 2.4061 0.5536 2.6337 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713528721.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:56 Heat of formation + Delta-G solvation = -76.533610 kcal Electronic energy + Delta-G solvation = -29174.567700 eV Core-core repulsion = 25010.172263 eV Total energy + Delta-G solvation = -4164.395437 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.57655 -39.44310 -38.31736 -37.71823 -36.55949 -35.12567 -33.92719 -32.26446 -31.61442 -29.94919 -28.99051 -27.34697 -26.54049 -24.84115 -23.79732 -22.78266 -21.91847 -21.28079 -20.67037 -20.18868 -19.35840 -18.32845 -18.00416 -17.22639 -16.66784 -16.26012 -15.99191 -15.62324 -15.26450 -15.17529 -14.89908 -14.76401 -14.64081 -14.29714 -13.88403 -13.63276 -13.49812 -13.35707 -13.17679 -12.69880 -12.48124 -12.36923 -12.02008 -12.00580 -11.88644 -11.78480 -11.75094 -11.46385 -11.28009 -11.08972 -11.01358 -10.95141 -10.84075 -10.70878 -10.62796 -10.59565 -9.97137 -9.54893 -9.54633 -9.33059 -8.60065 -8.17408 -8.06439 -6.30292 -3.81584 2.27729 2.68554 3.01973 3.06887 3.14849 3.26359 3.42351 3.75281 3.97505 4.10721 4.11843 4.30182 4.41231 4.42616 4.48099 4.62536 4.68453 4.72496 4.85323 4.86732 4.98419 5.08679 5.16795 5.20419 5.24644 5.27709 5.32878 5.34321 5.42781 5.45073 5.57201 5.64439 5.65223 5.68049 5.75922 5.76679 5.84259 5.90453 5.97943 6.09849 6.18187 6.33229 6.55154 7.06714 7.10204 7.18566 7.59431 7.93336 8.15360 8.61507 8.96434 9.43532 9.85165 10.82930 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.030434 B = 0.001713 C = 0.001681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.808044 B =16346.230712 C =16654.301936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.104 3.896 4 H 0.090 0.910 5 C 0.493 3.507 6 O -0.522 6.522 7 N -0.726 5.726 8 C 0.130 3.870 9 C -0.110 4.110 10 H 0.080 0.920 11 C -0.119 4.119 12 C 0.040 3.960 13 N -0.491 5.491 14 C 0.034 3.966 15 C 0.454 3.546 16 O -0.558 6.558 17 N -0.593 5.593 18 C -0.303 4.303 19 H 0.119 0.881 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.042 3.958 27 C -0.164 4.164 28 C -0.158 4.158 29 C -0.168 4.168 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.043 0.957 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.099 0.901 40 H 0.051 0.949 41 H 0.090 0.910 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.046 0.954 45 H 0.083 0.917 46 H 0.119 0.881 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.097 0.903 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.968 -21.023 22.163 31.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.272 6.272 3 C 0.043 3.957 4 H 0.108 0.892 5 C 0.277 3.723 6 O -0.397 6.397 7 N -0.380 5.380 8 C 0.006 3.994 9 C -0.129 4.129 10 H 0.098 0.902 11 C -0.157 4.157 12 C -0.088 4.088 13 N -0.215 5.215 14 C -0.098 4.098 15 C 0.240 3.760 16 O -0.439 6.439 17 N -0.233 5.233 18 C -0.432 4.432 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.523 5.523 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.087 4.087 27 C -0.182 4.182 28 C -0.195 4.195 29 C -0.205 4.205 30 H 0.066 0.934 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.117 0.883 40 H 0.069 0.931 41 H 0.108 0.892 42 H 0.202 0.798 43 H 0.083 0.917 44 H 0.065 0.935 45 H 0.101 0.899 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.112 0.888 49 H 0.116 0.884 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.584 -21.814 21.267 31.169 hybrid contribution 2.130 1.280 0.059 2.486 sum 8.714 -20.534 21.326 30.861 Atomic orbital electron populations 1.22892 0.80351 1.03415 1.00205 1.87975 1.20190 1.24709 1.94363 1.21419 0.95382 0.86958 0.91967 0.89239 1.21228 0.77285 0.81766 0.91973 1.90735 1.49451 1.53556 1.45969 1.46047 1.68262 1.14355 1.09383 1.21492 1.01851 0.93708 0.82320 1.22248 0.98963 0.94081 0.97603 0.90168 1.22620 0.98852 0.95632 0.98604 1.23285 1.02138 0.95663 0.87701 1.64457 1.36522 1.07583 1.12949 1.22099 0.95466 0.94301 0.97936 1.19613 0.89464 0.83448 0.83504 1.90549 1.18613 1.74579 1.60177 1.42208 1.09785 1.26823 1.44490 1.19421 0.93407 1.04636 1.25751 0.86299 1.25034 0.98050 0.96037 0.97093 1.69623 1.33736 1.15625 1.33270 0.86672 0.84687 0.78665 0.79339 1.19615 1.20223 1.19601 1.22856 0.95241 0.95569 0.95011 1.22263 0.96519 1.01265 0.98171 1.22908 1.00805 0.93994 1.01782 1.22984 1.03323 1.03792 0.90445 0.93434 0.89073 0.93869 0.76648 0.91369 0.90579 0.90315 0.91262 0.94322 0.88258 0.93135 0.89225 0.79783 0.91653 0.93546 0.89919 0.86322 0.87317 0.88756 0.88412 0.88519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.81 101.05 1.09 1.29 16 2 O -0.36 -3.38 8.24 -55.08 -0.45 -3.83 16 3 C 0.10 0.82 2.87 -27.88 -0.08 0.74 16 4 H 0.09 0.51 7.79 -51.93 -0.40 0.10 16 5 C 0.49 5.14 7.12 -10.98 -0.08 5.06 16 6 O -0.52 -7.87 16.51 -14.30 -0.24 -8.11 16 7 N -0.73 -5.84 5.32 -60.30 -0.32 -6.16 16 8 C 0.13 1.24 4.76 -4.04 -0.02 1.22 16 9 C -0.11 -0.98 3.03 -89.26 -0.27 -1.25 16 10 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 11 C -0.12 -1.22 6.41 -24.87 -0.16 -1.38 16 12 C 0.04 0.57 5.94 -1.90 -0.01 0.56 16 13 N -0.49 -7.62 4.91 -231.90 -1.14 -8.76 16 14 C 0.03 0.56 5.19 -4.98 -0.03 0.54 16 15 C 0.45 10.30 7.61 -10.98 -0.08 10.22 16 16 O -0.56 -14.90 14.64 5.55 0.08 -14.82 16 17 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 18 C -0.30 -8.59 10.16 -14.94 -0.15 -8.74 16 19 H 0.12 3.85 7.39 -52.48 -0.39 3.46 16 20 C 0.04 1.11 5.50 -17.46 -0.10 1.02 16 21 N -0.88 -25.81 13.96 55.50 0.77 -25.04 16 22 Si 0.88 19.36 27.74 -169.99 -4.71 14.64 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.41 6.52 56.52 0.37 -5.04 16 26 C 0.04 0.47 6.32 -2.75 -0.02 0.46 16 27 C -0.16 -1.03 5.67 -90.62 -0.51 -1.55 16 28 C -0.16 -1.06 9.88 -26.69 -0.26 -1.32 16 29 C -0.17 -0.88 10.19 -26.69 -0.27 -1.15 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.04 0.22 8.08 -51.93 -0.42 -0.20 16 33 H 0.40 2.09 8.41 -40.82 -0.34 1.75 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.89 7.99 -51.93 -0.42 0.48 16 36 H 0.08 0.89 7.76 -51.93 -0.40 0.49 16 37 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 38 H 0.04 0.52 7.81 -51.93 -0.41 0.11 16 39 H 0.10 1.75 7.10 -51.93 -0.37 1.38 16 40 H 0.05 0.73 7.83 -51.93 -0.41 0.33 16 41 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 42 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.05 0.47 7.77 -51.93 -0.40 0.06 16 45 H 0.08 0.93 7.68 -51.93 -0.40 0.53 16 46 H 0.12 0.61 8.03 -51.93 -0.42 0.19 16 47 H 0.11 0.88 7.06 -51.93 -0.37 0.51 16 48 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 49 H 0.10 0.39 8.14 -51.93 -0.42 -0.04 16 50 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 406.61 15.07 6.13 6.13 Total: -1.00 -35.99 406.61 -9.23 -45.22 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -8.35 Total: 9.20 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: -0.95 Total: 5.70 kcal Atomic # 7 Polarization: -53.40 SS G_CDS: -0.74 Total: -54.14 kcal Atomic # 8 Polarization: -26.15 SS G_CDS: -0.61 Total: -26.76 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -4.71 Total: 14.64 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.99 -9.23 -45.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713528721.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.312 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds