Wall clock time and date at job start Sat Apr 11 2020 05:48:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00159 * 2 1 4 4 H 1.09004 * 109.46791 * 29.99668 * 3 2 1 5 5 C 1.50697 * 109.47216 * 269.99670 * 3 2 1 6 6 O 1.21287 * 119.99829 * 354.99896 * 5 3 2 7 7 N 1.34776 * 120.00171 * 175.00040 * 5 3 2 8 8 C 1.46498 * 120.00095 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47144 * 179.97438 * 8 7 5 10 10 H 1.09005 * 110.64311 * 303.29904 * 9 8 7 11 11 C 1.54589 * 110.72417 * 66.45122 * 9 8 7 12 12 C 1.54004 * 105.13670 * 140.31648 * 11 9 8 13 13 N 1.47893 * 107.06144 * 1.22406 * 12 11 9 14 14 C 1.46899 * 111.00398 * 214.16044 * 13 12 11 15 15 C 1.50694 * 109.47286 * 176.64056 * 14 13 12 16 16 O 1.21292 * 120.00014 * 6.12947 * 15 14 13 17 17 N 1.34777 * 119.99844 * 186.13259 * 15 14 13 18 18 C 1.37100 * 119.99992 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00025 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00059 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00036 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99887 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47162 * 270.00293 * 22 20 18 24 24 H 1.48491 * 109.47070 * 30.00471 * 22 20 18 25 25 H 1.48499 * 109.46933 * 150.00742 * 22 20 18 26 26 C 1.48540 * 105.82145 * 334.67077 * 13 12 11 27 27 C 1.53000 * 109.47345 * 149.99502 * 3 2 1 28 28 C 1.53007 * 117.49677 * 8.62350 * 27 3 2 29 29 C 1.53006 * 117.49965 * 300.00064 * 27 3 2 30 30 H 1.08996 * 109.46618 * 60.00292 * 1 2 3 31 31 H 1.09003 * 109.47214 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47422 * 300.00584 * 1 2 3 33 33 H 0.97002 * 119.99842 * 359.97438 * 7 5 3 34 34 H 1.09004 * 109.46990 * 59.99500 * 8 7 5 35 35 H 1.09003 * 109.46752 * 300.00086 * 8 7 5 36 36 H 1.08995 * 110.31051 * 21.40226 * 11 9 8 37 37 H 1.08995 * 110.39707 * 259.27112 * 11 9 8 38 38 H 1.08997 * 109.91343 * 241.86873 * 12 11 9 39 39 H 1.09002 * 110.07891 * 120.67387 * 12 11 9 40 40 H 1.08991 * 109.47011 * 56.63316 * 14 13 12 41 41 H 1.09002 * 109.46328 * 296.63348 * 14 13 12 42 42 H 0.96997 * 120.00064 * 359.97438 * 17 15 14 43 43 H 0.96996 * 120.00239 * 179.97438 * 21 20 18 44 44 H 1.08990 * 110.67087 * 157.63980 * 26 13 12 45 45 H 1.08997 * 110.66411 * 280.77449 * 26 13 12 46 46 H 1.08998 * 115.55371 * 154.33392 * 27 3 2 47 47 H 1.08995 * 117.49703 * 359.97438 * 28 27 3 48 48 H 1.08995 * 117.49731 * 145.02101 * 28 27 3 49 49 H 1.08992 * 117.49904 * 214.97702 * 29 27 3 50 50 H 1.08999 * 117.49545 * 0.02562 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2147 1.7643 -1.4208 6 8 1.9793 1.0104 -2.3413 7 7 2.6590 3.0123 -1.6686 8 6 2.8572 3.4586 -3.0498 9 6 3.3621 4.9028 -3.0516 10 1 2.6694 5.5528 -2.5169 11 6 4.7779 4.9882 -2.4367 12 6 5.5346 6.0068 -3.3093 13 7 4.5854 6.4883 -4.3362 14 6 5.2757 6.7637 -5.6034 15 6 4.2674 7.1718 -6.6463 16 8 3.1064 7.3357 -6.3359 17 7 4.6557 7.3546 -7.9239 18 6 3.7383 7.7254 -8.8728 19 1 2.7044 7.8706 -8.5967 20 6 4.1386 7.9134 -10.1901 21 7 3.2594 8.2693 -11.0995 22 14 5.9268 7.6615 -10.6679 23 1 6.6633 8.9427 -10.5223 24 1 6.5361 6.6369 -9.7824 25 1 6.0026 7.2047 -12.0788 26 6 3.5829 5.4046 -4.5009 27 6 3.3589 1.2633 0.7213 28 6 3.9138 -0.1109 1.1019 29 6 3.3634 0.8187 2.1854 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.8469 3.6153 -0.9323 34 1 1.9112 3.4040 -3.5885 35 1 3.5906 2.8162 -3.5374 36 1 5.2681 4.0157 -2.4792 37 1 4.7239 5.3392 -1.4062 38 1 6.3868 5.5248 -3.7882 39 1 5.8760 6.8424 -2.6982 40 1 5.7984 5.8665 -5.9347 41 1 5.9944 7.5701 -5.4576 42 1 5.5843 7.2238 -8.1720 43 1 3.5388 8.4009 -12.0190 44 1 2.6558 5.7982 -4.9171 45 1 3.9791 4.6062 -5.1282 46 1 4.0741 2.0311 0.4264 47 1 3.3179 -0.9848 0.8387 48 1 4.9943 -0.2473 1.0571 49 1 4.0818 1.2938 2.8534 50 1 2.4056 0.5559 2.6345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713528722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:59 Heat of formation + Delta-G solvation = -76.496021 kcal Electronic energy + Delta-G solvation = -29431.553128 eV Core-core repulsion = 25267.159320 eV Total energy + Delta-G solvation = -4164.393807 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53945 -39.45750 -38.29885 -37.67235 -36.53690 -35.10492 -33.96494 -32.24900 -31.62989 -29.94144 -28.93295 -27.25462 -26.54151 -24.92223 -23.80078 -22.75119 -21.90742 -21.19523 -20.42602 -20.26571 -19.37540 -18.31073 -17.95614 -17.13440 -16.72991 -16.38032 -15.70063 -15.48441 -15.43504 -15.18137 -14.96627 -14.78830 -14.61955 -14.32841 -13.81063 -13.77151 -13.46198 -13.22748 -13.02040 -12.84170 -12.53149 -12.34335 -12.00510 -11.94054 -11.90681 -11.79916 -11.75070 -11.37191 -11.18520 -11.12616 -11.02418 -10.86845 -10.80718 -10.65935 -10.60305 -10.59597 -9.98350 -9.56039 -9.50394 -9.28721 -8.56291 -8.20510 -8.08783 -6.31844 -3.83244 2.31353 2.72398 3.01886 3.06215 3.14572 3.29292 3.45111 3.72162 3.97737 4.09663 4.14841 4.34805 4.43902 4.45505 4.60446 4.68537 4.70934 4.75004 4.87824 4.91282 5.00422 5.10373 5.14462 5.20404 5.24902 5.26957 5.35532 5.38195 5.46273 5.57353 5.63002 5.65640 5.67393 5.70585 5.75411 5.78929 5.87214 5.90268 6.01648 6.11716 6.24195 6.45181 6.57673 7.06636 7.11725 7.23690 7.57432 7.97614 8.13466 8.59029 8.94258 9.41438 9.81774 10.81197 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.001925 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.048077 B =14539.502342 C =15146.713715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.355 6.355 3 C 0.105 3.895 4 H 0.090 0.910 5 C 0.492 3.508 6 O -0.522 6.522 7 N -0.725 5.725 8 C 0.128 3.872 9 C -0.105 4.105 10 H 0.091 0.909 11 C -0.126 4.126 12 C 0.033 3.967 13 N -0.493 5.493 14 C 0.034 3.966 15 C 0.451 3.549 16 O -0.560 6.560 17 N -0.590 5.590 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.270 1.270 24 H -0.270 1.270 25 H -0.276 1.276 26 C 0.048 3.952 27 C -0.164 4.164 28 C -0.158 4.158 29 C -0.168 4.168 30 H 0.047 0.953 31 H 0.091 0.909 32 H 0.042 0.958 33 H 0.400 0.600 34 H 0.073 0.927 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.048 0.952 41 H 0.092 0.908 42 H 0.370 0.630 43 H 0.273 0.727 44 H 0.111 0.889 45 H 0.041 0.959 46 H 0.119 0.881 47 H 0.108 0.892 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.710 -13.372 27.134 30.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C 0.043 3.957 4 H 0.107 0.893 5 C 0.276 3.724 6 O -0.397 6.397 7 N -0.379 5.379 8 C 0.004 3.996 9 C -0.125 4.125 10 H 0.109 0.891 11 C -0.164 4.164 12 C -0.095 4.095 13 N -0.217 5.217 14 C -0.098 4.098 15 C 0.237 3.763 16 O -0.442 6.442 17 N -0.230 5.230 18 C -0.433 4.433 19 H 0.138 0.862 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.196 1.196 25 H -0.202 1.202 26 C -0.080 4.080 27 C -0.182 4.182 28 C -0.195 4.195 29 C -0.205 4.205 30 H 0.065 0.935 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.234 0.766 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.096 0.904 40 H 0.066 0.934 41 H 0.110 0.890 42 H 0.203 0.797 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.060 0.940 46 H 0.137 0.863 47 H 0.127 0.873 48 H 0.113 0.887 49 H 0.116 0.884 50 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.553 -13.450 26.571 29.890 hybrid contribution 1.828 -0.242 -0.689 1.968 sum 4.380 -13.692 25.881 29.606 Atomic orbital electron populations 1.22888 0.80400 1.03399 1.00158 1.87976 1.20153 1.24738 1.94359 1.21417 0.95385 0.86923 0.91971 0.89258 1.21237 0.77353 0.81796 0.91972 1.90741 1.49420 1.53607 1.45969 1.46039 1.68134 1.14381 1.09360 1.21396 1.01746 0.94150 0.82275 1.22367 0.97005 0.94786 0.98304 0.89089 1.22480 0.95324 0.99122 0.99436 1.22912 0.94711 0.97416 0.94478 1.64531 1.11908 1.39004 1.06239 1.22120 0.96447 1.00941 0.90260 1.19605 0.89432 0.84496 0.82806 1.90527 1.18945 1.54722 1.80038 1.42213 1.10166 1.62711 1.07861 1.19423 0.93679 1.42991 0.87205 0.86242 1.25043 0.98075 0.97501 0.95565 1.69618 1.33766 1.46096 1.02575 0.86673 0.84798 0.78837 0.79087 1.19587 1.19568 1.20171 1.23298 0.98951 0.91943 0.93823 1.22267 0.96529 1.01312 0.98098 1.22898 1.00843 0.93985 1.01777 1.22972 1.03298 1.03804 0.90465 0.93459 0.89085 0.93899 0.76601 0.90909 0.91324 0.91406 0.91105 0.93967 0.90364 0.93364 0.88963 0.79722 0.91603 0.87128 0.94035 0.86263 0.87334 0.88745 0.88402 0.88553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 10.81 101.05 1.09 1.30 16 2 O -0.36 -3.52 8.24 -55.09 -0.45 -3.97 16 3 C 0.10 0.86 2.87 -27.88 -0.08 0.78 16 4 H 0.09 0.53 7.79 -51.93 -0.40 0.13 16 5 C 0.49 5.46 7.12 -10.99 -0.08 5.38 16 6 O -0.52 -8.30 16.51 -14.31 -0.24 -8.53 16 7 N -0.73 -6.43 5.29 -60.29 -0.32 -6.75 16 8 C 0.13 1.40 5.00 -4.04 -0.02 1.38 16 9 C -0.11 -1.14 3.13 -88.76 -0.28 -1.42 16 10 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 11 C -0.13 -1.14 6.20 -25.37 -0.16 -1.30 16 12 C 0.03 0.37 6.70 -2.75 -0.02 0.35 16 13 N -0.49 -7.64 5.11 -231.89 -1.18 -8.82 16 14 C 0.03 0.57 5.30 -4.98 -0.03 0.54 16 15 C 0.45 10.15 7.41 -10.99 -0.08 10.07 16 16 O -0.56 -14.68 13.87 5.55 0.08 -14.61 16 17 N -0.59 -14.02 5.09 -10.97 -0.06 -14.07 16 18 C -0.30 -8.58 10.16 -14.93 -0.15 -8.73 16 19 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 20 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 21 N -0.88 -25.74 13.96 55.50 0.77 -24.97 16 22 Si 0.88 19.40 27.74 -169.99 -4.71 14.68 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 24 H -0.27 -5.44 6.52 56.52 0.37 -5.07 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 C 0.05 0.73 5.03 -1.89 -0.01 0.72 16 27 C -0.16 -1.10 5.67 -90.61 -0.51 -1.62 16 28 C -0.16 -1.13 9.87 -26.72 -0.26 -1.39 16 29 C -0.17 -0.93 10.19 -26.72 -0.27 -1.20 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.04 0.23 8.08 -51.93 -0.42 -0.19 16 33 H 0.40 2.38 8.33 -40.82 -0.34 2.04 16 34 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 36 H 0.07 0.59 7.80 -51.93 -0.41 0.18 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 38 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.72 7.98 -51.93 -0.41 0.31 16 41 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 42 H 0.37 7.74 5.76 -40.82 -0.24 7.51 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.11 2.07 6.43 -51.93 -0.33 1.73 16 45 H 0.04 0.64 7.92 -51.93 -0.41 0.23 16 46 H 0.12 0.67 8.03 -51.93 -0.42 0.25 16 47 H 0.11 0.93 7.06 -51.93 -0.37 0.56 16 48 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 50 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 405.57 15.07 6.11 6.11 Total: -1.00 -35.43 405.57 -9.31 -44.73 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -8.35 Total: 10.30 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.95 Total: 5.90 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: -0.79 Total: -54.62 kcal Atomic # 8 Polarization: -26.50 SS G_CDS: -0.61 Total: -27.11 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -4.71 Total: 14.68 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -35.43 -9.31 -44.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713528722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.765 kcal (2) G-P(sol) polarization free energy of solvation -35.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.496 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds