Wall clock time and date at job start Sat Apr 11 2020 05:48:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00159 * 2 1 4 4 H 1.09004 * 109.46791 * 29.99668 * 3 2 1 5 5 C 1.50697 * 109.47216 * 269.99670 * 3 2 1 6 6 O 1.21287 * 119.99829 * 354.99896 * 5 3 2 7 7 N 1.34776 * 120.00171 * 175.00040 * 5 3 2 8 8 C 1.46498 * 120.00095 * 180.02562 * 7 5 3 9 9 C 1.52998 * 109.47144 * 179.97438 * 8 7 5 10 10 H 1.09005 * 110.64311 * 303.29904 * 9 8 7 11 11 C 1.54589 * 110.72417 * 66.45122 * 9 8 7 12 12 C 1.54004 * 105.13670 * 140.31648 * 11 9 8 13 13 N 1.47893 * 107.06144 * 1.22406 * 12 11 9 14 14 C 1.46899 * 111.00398 * 214.16044 * 13 12 11 15 15 C 1.50694 * 109.47286 * 176.64056 * 14 13 12 16 16 O 1.21292 * 120.00014 * 6.12947 * 15 14 13 17 17 N 1.34777 * 119.99844 * 186.13259 * 15 14 13 18 18 C 1.37100 * 119.99992 * 179.97438 * 17 15 14 19 19 H 1.07997 * 120.00025 * 359.97438 * 18 17 15 20 20 C 1.38950 * 120.00059 * 180.02562 * 18 17 15 21 21 N 1.31411 * 120.00036 * 180.02562 * 20 18 17 22 22 Si 1.86803 * 119.99887 * 359.97438 * 20 18 17 23 23 H 1.48498 * 109.47162 * 270.00293 * 22 20 18 24 24 H 1.48491 * 109.47070 * 30.00471 * 22 20 18 25 25 H 1.48499 * 109.46933 * 150.00742 * 22 20 18 26 26 C 1.48540 * 105.82145 * 334.67077 * 13 12 11 27 27 C 1.53000 * 109.47345 * 149.99502 * 3 2 1 28 28 C 1.53007 * 117.49677 * 8.62350 * 27 3 2 29 29 C 1.53006 * 117.49965 * 300.00064 * 27 3 2 30 30 H 1.08996 * 109.46618 * 60.00292 * 1 2 3 31 31 H 1.09003 * 109.47214 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47422 * 300.00584 * 1 2 3 33 33 H 0.97002 * 119.99842 * 359.97438 * 7 5 3 34 34 H 1.09004 * 109.46990 * 59.99500 * 8 7 5 35 35 H 1.09003 * 109.46752 * 300.00086 * 8 7 5 36 36 H 1.08995 * 110.31051 * 21.40226 * 11 9 8 37 37 H 1.08995 * 110.39707 * 259.27112 * 11 9 8 38 38 H 1.08997 * 109.91343 * 241.86873 * 12 11 9 39 39 H 1.09002 * 110.07891 * 120.67387 * 12 11 9 40 40 H 1.08991 * 109.47011 * 56.63316 * 14 13 12 41 41 H 1.09002 * 109.46328 * 296.63348 * 14 13 12 42 42 H 0.96997 * 120.00064 * 359.97438 * 17 15 14 43 43 H 0.96996 * 120.00239 * 179.97438 * 21 20 18 44 44 H 1.08990 * 110.67087 * 157.63980 * 26 13 12 45 45 H 1.08997 * 110.66411 * 280.77449 * 26 13 12 46 46 H 1.08998 * 115.55371 * 154.33392 * 27 3 2 47 47 H 1.08995 * 117.49703 * 359.97438 * 28 27 3 48 48 H 1.08995 * 117.49731 * 145.02101 * 28 27 3 49 49 H 1.08992 * 117.49904 * 214.97702 * 29 27 3 50 50 H 1.08999 * 117.49545 * 0.02562 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3449 1.9993 0.5138 5 6 2.2147 1.7643 -1.4208 6 8 1.9793 1.0104 -2.3413 7 7 2.6590 3.0123 -1.6686 8 6 2.8572 3.4586 -3.0498 9 6 3.3621 4.9028 -3.0516 10 1 2.6694 5.5528 -2.5169 11 6 4.7779 4.9882 -2.4367 12 6 5.5346 6.0068 -3.3093 13 7 4.5854 6.4883 -4.3362 14 6 5.2757 6.7637 -5.6034 15 6 4.2674 7.1718 -6.6463 16 8 3.1064 7.3357 -6.3359 17 7 4.6557 7.3546 -7.9239 18 6 3.7383 7.7254 -8.8728 19 1 2.7044 7.8706 -8.5967 20 6 4.1386 7.9134 -10.1901 21 7 3.2594 8.2693 -11.0995 22 14 5.9268 7.6615 -10.6679 23 1 6.6633 8.9427 -10.5223 24 1 6.5361 6.6369 -9.7824 25 1 6.0026 7.2047 -12.0788 26 6 3.5829 5.4046 -4.5009 27 6 3.3589 1.2633 0.7213 28 6 3.9138 -0.1109 1.1019 29 6 3.3634 0.8187 2.1854 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 2.8469 3.6153 -0.9323 34 1 1.9112 3.4040 -3.5885 35 1 3.5906 2.8162 -3.5374 36 1 5.2681 4.0157 -2.4792 37 1 4.7239 5.3392 -1.4062 38 1 6.3868 5.5248 -3.7882 39 1 5.8760 6.8424 -2.6982 40 1 5.7984 5.8665 -5.9347 41 1 5.9944 7.5701 -5.4576 42 1 5.5843 7.2238 -8.1720 43 1 3.5388 8.4009 -12.0190 44 1 2.6558 5.7982 -4.9171 45 1 3.9791 4.6062 -5.1282 46 1 4.0741 2.0311 0.4264 47 1 3.3179 -0.9848 0.8387 48 1 4.9943 -0.2473 1.0571 49 1 4.0818 1.2938 2.8534 50 1 2.4056 0.5559 2.6345 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713528722.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:58 Heat of formation + Delta-G solvation = -104.563936 kcal Electronic energy + Delta-G solvation = -29432.770244 eV Core-core repulsion = 25267.159320 eV Total energy + Delta-G solvation = -4165.610924 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.36864 -40.76531 -39.47975 -38.77191 -37.10710 -36.22354 -35.85379 -33.80955 -33.22781 -30.82746 -29.72942 -28.59938 -27.35487 -26.26207 -25.17115 -23.20550 -22.64226 -22.20364 -21.31550 -21.27197 -21.05238 -20.20194 -18.73440 -17.94921 -17.82645 -17.33583 -16.94164 -16.74256 -16.48385 -16.28487 -16.13638 -15.93425 -15.46128 -15.36947 -15.08755 -14.83207 -14.55788 -14.45043 -14.29835 -14.11113 -13.95057 -13.70949 -13.23882 -12.97244 -12.89190 -12.56198 -12.45821 -12.43133 -12.38516 -12.25046 -12.10141 -11.99652 -11.91408 -11.77191 -11.50713 -11.47768 -11.35330 -11.09871 -10.35864 -10.28823 -10.25012 -10.18405 -9.32470 -8.42655 -6.03385 1.28364 1.33888 1.42677 1.48099 1.93571 1.94594 2.21388 2.66253 2.70451 2.94866 3.13026 3.18590 3.51080 3.68783 3.70106 3.82193 3.87470 3.93608 4.14950 4.16785 4.24299 4.28983 4.32472 4.33564 4.37699 4.40447 4.48105 4.52343 4.56473 4.67903 4.75566 4.79738 4.82291 4.87918 4.98433 5.02009 5.10505 5.23051 5.24351 5.27477 5.37369 5.38087 5.51409 5.86968 5.93251 5.96118 6.07960 6.51000 6.58257 6.86978 7.18152 7.38063 7.95168 8.74961 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.020828 B = 0.001925 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.048077 B =14539.502342 C =15146.713715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.377 6.377 3 C 0.106 3.894 4 H 0.118 0.882 5 C 0.489 3.511 6 O -0.579 6.579 7 N -0.706 5.706 8 C 0.136 3.864 9 C -0.089 4.089 10 H 0.095 0.905 11 C -0.115 4.115 12 C 0.031 3.969 13 N -0.515 5.515 14 C 0.045 3.955 15 C 0.448 3.552 16 O -0.605 6.605 17 N -0.592 5.592 18 C -0.327 4.327 19 H 0.055 0.945 20 C -0.017 4.017 21 N -0.934 5.934 22 Si 0.965 3.035 23 H -0.255 1.255 24 H -0.233 1.233 25 H -0.276 1.276 26 C 0.045 3.955 27 C -0.167 4.167 28 C -0.178 4.178 29 C -0.147 4.147 30 H 0.029 0.971 31 H 0.098 0.902 32 H 0.069 0.931 33 H 0.419 0.581 34 H 0.047 0.953 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.103 0.897 38 H 0.056 0.944 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.389 0.611 43 H 0.279 0.721 44 H 0.062 0.938 45 H 0.034 0.966 46 H 0.136 0.864 47 H 0.087 0.913 48 H 0.101 0.899 49 H 0.117 0.883 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.606 -13.603 30.298 34.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.294 6.294 3 C 0.045 3.955 4 H 0.136 0.864 5 C 0.275 3.725 6 O -0.458 6.458 7 N -0.360 5.360 8 C 0.012 3.988 9 C -0.108 4.108 10 H 0.113 0.887 11 C -0.153 4.153 12 C -0.096 4.096 13 N -0.239 5.239 14 C -0.086 4.086 15 C 0.236 3.764 16 O -0.489 6.489 17 N -0.234 5.234 18 C -0.456 4.456 19 H 0.073 0.927 20 C -0.215 4.215 21 N -0.575 5.575 22 Si 0.785 3.215 23 H -0.179 1.179 24 H -0.157 1.157 25 H -0.201 1.201 26 C -0.084 4.084 27 C -0.186 4.186 28 C -0.215 4.215 29 C -0.184 4.184 30 H 0.047 0.953 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.256 0.744 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.121 0.879 38 H 0.074 0.926 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.140 0.860 42 H 0.224 0.776 43 H 0.088 0.912 44 H 0.081 0.919 45 H 0.052 0.948 46 H 0.153 0.847 47 H 0.106 0.894 48 H 0.120 0.880 49 H 0.136 0.864 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 6.471 -13.657 29.805 33.418 hybrid contribution 0.445 -0.152 -1.624 1.691 sum 6.916 -13.810 28.181 32.136 Atomic orbital electron populations 1.23009 0.79555 1.04137 1.00503 1.87962 1.21275 1.25923 1.94268 1.21585 0.96945 0.86880 0.90081 0.86443 1.21917 0.76143 0.81603 0.92822 1.90717 1.51974 1.55249 1.47879 1.45832 1.67050 1.14135 1.09026 1.21145 1.00231 0.94212 0.83233 1.22171 0.98910 0.94130 0.95605 0.88674 1.22487 0.92917 0.99356 1.00524 1.23056 0.94298 0.98640 0.93562 1.64487 1.13283 1.39723 1.06450 1.22068 0.94707 1.02947 0.88893 1.20887 0.90079 0.82059 0.83345 1.90523 1.21650 1.55835 1.80919 1.42048 1.10270 1.63417 1.07675 1.18987 0.92234 1.45190 0.89177 0.92667 1.26126 1.04597 0.96178 0.94613 1.69803 1.37144 1.47242 1.03300 0.85362 0.76799 0.80302 0.79039 1.17935 1.15676 1.20067 1.23122 0.97160 0.91672 0.96404 1.22356 0.95814 1.01336 0.99047 1.22903 1.01070 0.93739 1.03742 1.23041 1.03591 1.01992 0.89800 0.95266 0.88373 0.91235 0.74369 0.93408 0.92310 0.90297 0.87878 0.92579 0.88716 0.90696 0.85965 0.77565 0.91157 0.91928 0.94797 0.84665 0.89407 0.88026 0.86443 0.88364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 10.81 113.37 1.23 1.57 16 2 O -0.38 -7.25 8.24 -129.99 -1.07 -8.33 16 3 C 0.11 1.58 2.87 29.85 0.09 1.66 16 4 H 0.12 1.05 7.79 -2.38 -0.02 1.03 16 5 C 0.49 10.54 7.12 87.66 0.62 11.17 16 6 O -0.58 -19.02 16.51 15.94 0.26 -18.75 16 7 N -0.71 -11.41 5.29 -463.06 -2.45 -13.86 16 8 C 0.14 2.95 5.00 86.38 0.43 3.39 16 9 C -0.09 -1.81 3.13 -9.59 -0.03 -1.84 16 10 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 11 C -0.12 -1.62 6.20 31.47 0.20 -1.43 16 12 C 0.03 0.58 6.70 86.45 0.58 1.16 16 13 N -0.51 -15.03 5.11 -887.58 -4.54 -19.57 16 14 C 0.05 1.40 5.30 85.56 0.45 1.86 16 15 C 0.45 20.46 7.41 87.65 0.65 21.11 16 16 O -0.61 -33.56 13.87 -3.07 -0.04 -33.60 16 17 N -0.59 -28.28 5.09 -306.99 -1.56 -29.84 16 18 C -0.33 -19.35 10.16 84.04 0.85 -18.49 16 19 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 20 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 21 N -0.93 -56.93 13.96 21.66 0.30 -56.63 16 22 Si 0.97 39.24 27.74 68.60 1.90 41.14 16 23 H -0.26 -9.76 7.11 99.48 0.71 -9.06 16 24 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 25 H -0.28 -11.15 7.11 99.48 0.71 -10.44 16 26 C 0.04 1.39 5.03 86.65 0.44 1.82 16 27 C -0.17 -1.81 5.67 -10.79 -0.06 -1.87 16 28 C -0.18 -2.26 9.87 30.60 0.30 -1.96 16 29 C -0.15 -1.16 10.19 30.60 0.31 -0.85 16 30 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.10 1.21 8.14 -2.39 -0.02 1.20 16 32 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 33 H 0.42 3.61 8.33 -92.71 -0.77 2.83 16 34 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.06 1.41 8.08 -2.39 -0.02 1.39 16 36 H 0.08 1.01 7.80 -2.39 -0.02 0.99 16 37 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 38 H 0.06 0.91 7.68 -2.39 -0.02 0.89 16 39 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 40 H 0.08 1.96 7.98 -2.39 -0.02 1.95 16 41 H 0.12 3.11 8.14 -2.39 -0.02 3.09 16 42 H 0.39 15.40 5.76 -92.71 -0.53 14.86 16 43 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 44 H 0.06 2.53 6.43 -2.39 -0.02 2.51 16 45 H 0.03 1.06 7.92 -2.39 -0.02 1.05 16 46 H 0.14 1.00 8.03 -2.39 -0.02 0.98 16 47 H 0.09 1.49 7.06 -2.39 -0.02 1.47 16 48 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 49 H 0.12 0.50 8.14 -2.39 -0.02 0.48 16 50 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -86.68 405.57 -1.08 -87.76 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: -0.41 Total: 34.84 kcal Atomic # 6 Polarization: 10.31 SS G_CDS: 6.53 Total: 16.84 kcal Atomic # 7 Polarization: -111.65 SS G_CDS: -8.24 Total: -119.89 kcal Atomic # 8 Polarization: -59.83 SS G_CDS: -0.85 Total: -60.68 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.90 Total: 41.14 kcal Total: -86.68 -1.08 -87.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713528722.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.806 kcal (2) G-P(sol) polarization free energy of solvation -86.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.564 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds