Wall clock time and date at job start Sat Apr 11 2020 05:49:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99990 * 2 1 4 4 H 1.48504 * 109.46943 * 271.97672 * 3 2 1 5 5 H 1.48500 * 109.47242 * 31.97473 * 3 2 1 6 6 H 1.48505 * 109.47338 * 151.97877 * 3 2 1 7 7 C 1.38811 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 339.43592 * 7 2 1 9 9 N 1.36939 * 120.00315 * 159.44439 * 7 2 1 10 10 C 1.47077 * 120.87789 * 333.50162 * 9 7 2 11 11 C 1.53234 * 108.52473 * 231.16592 * 10 9 7 12 12 N 1.46906 * 109.34115 * 306.17146 * 11 10 9 13 13 C 1.46896 * 111.00145 * 187.25037 * 12 11 10 14 14 C 1.52995 * 109.47176 * 170.00267 * 13 12 11 15 15 N 1.46497 * 109.47600 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00312 * 179.97438 * 15 14 13 17 17 O 1.21282 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99894 * 179.97438 * 16 15 14 19 19 N 1.46904 * 109.46984 * 180.02562 * 18 16 15 20 20 C 1.47183 * 110.99802 * 190.00391 * 19 18 16 21 21 C 1.52990 * 108.72853 * 167.63777 * 20 19 18 22 22 N 1.46004 * 110.04098 * 50.28981 * 21 20 19 23 23 C 1.33713 * 122.92809 * 341.83944 * 22 21 20 24 24 O 1.21289 * 118.62125 * 181.40449 * 23 22 21 25 25 C 1.46902 * 110.99747 * 67.11131 * 19 18 16 26 26 C 1.46900 * 111.26474 * 63.10356 * 12 11 10 27 27 C 1.47079 * 120.88507 * 153.48584 * 9 7 2 28 28 H 0.97001 * 120.00229 * 0.02562 * 1 2 3 29 29 H 1.09010 * 109.62504 * 111.45774 * 10 9 7 30 30 H 1.08998 * 109.79414 * 350.97575 * 10 9 7 31 31 H 1.08996 * 109.49788 * 186.21418 * 11 10 9 32 32 H 1.09000 * 109.49736 * 66.13068 * 11 10 9 33 33 H 1.09001 * 109.46895 * 50.00622 * 13 12 11 34 34 H 1.08999 * 109.47588 * 290.00318 * 13 12 11 35 35 H 1.09006 * 109.47539 * 59.99725 * 14 13 12 36 36 H 1.09005 * 109.47183 * 300.00173 * 14 13 12 37 37 H 0.97005 * 119.99816 * 0.02562 * 15 14 13 38 38 H 1.09001 * 109.46718 * 60.01165 * 18 16 15 39 39 H 1.08991 * 109.47413 * 300.00902 * 18 16 15 40 40 H 1.08999 * 109.59882 * 47.86700 * 20 19 18 41 41 H 1.09004 * 109.59898 * 287.40875 * 20 19 18 42 42 H 1.09003 * 109.37427 * 290.11692 * 21 20 19 43 43 H 1.09000 * 109.28150 * 170.41036 * 21 20 19 44 44 H 0.96998 * 118.53528 * 161.81465 * 22 21 20 45 45 H 1.09001 * 109.38583 * 53.50751 * 25 19 18 46 46 H 1.08997 * 109.38521 * 293.82045 * 25 19 18 47 47 H 1.08999 * 109.49350 * 56.85590 * 26 12 11 48 48 H 1.09002 * 109.49049 * 176.93709 * 26 12 11 49 49 H 1.08994 * 109.62828 * 248.54592 * 27 9 7 50 50 H 1.09010 * 109.62667 * 9.12752 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4558 2.0705 -1.3993 5 1 1.4691 2.6402 0.7414 6 1 3.5680 1.4285 0.6578 7 6 2.0102 -1.2021 -0.0005 8 1 1.5219 -2.1078 0.3276 9 7 3.3142 -1.2397 -0.4169 10 6 3.8306 -0.2473 -1.3717 11 6 4.5271 -0.9899 -2.5169 12 7 5.5363 -1.9023 -1.9626 13 6 6.3439 -2.5058 -3.0309 14 6 7.5325 -3.2466 -2.4152 15 7 8.3376 -3.8490 -3.4805 16 6 9.4432 -4.5555 -3.1723 17 8 9.7714 -4.6928 -2.0128 18 6 10.2711 -5.1756 -4.2682 19 7 11.4124 -5.8868 -3.6770 20 6 12.3700 -6.3022 -4.7146 21 6 13.6651 -6.7524 -4.0360 22 7 13.3675 -7.7125 -2.9771 23 6 12.1500 -7.8499 -2.4417 24 8 11.9960 -8.6546 -1.5473 25 6 10.9633 -7.0536 -2.9057 26 6 4.9161 -2.9363 -1.1234 27 6 4.2356 -2.2733 0.0789 28 1 -0.4850 0.8400 -0.0004 29 1 4.5454 0.4056 -0.8705 30 1 3.0073 0.3470 -1.7679 31 1 5.0111 -0.2697 -3.1764 32 1 3.7903 -1.5620 -3.0808 33 1 6.7086 -1.7235 -3.6966 34 1 5.7316 -3.2081 -3.5967 35 1 7.1678 -4.0289 -1.7494 36 1 8.1448 -2.5443 -1.8494 37 1 8.0753 -3.7389 -4.4080 38 1 10.6355 -4.3940 -4.9348 39 1 9.6585 -5.8783 -4.8330 40 1 12.5777 -5.4624 -5.3777 41 1 11.9515 -7.1291 -5.2885 42 1 14.1689 -5.8860 -3.6075 43 1 14.3154 -7.2197 -4.7756 44 1 14.0849 -8.2761 -2.6475 45 1 10.3300 -7.6805 -3.5335 46 1 10.3924 -6.7173 -2.0402 47 1 4.1738 -3.4812 -1.7067 48 1 5.6823 -3.6275 -0.7722 49 1 4.9891 -1.8153 0.7195 50 1 3.6777 -3.0214 0.6423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713810180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:04 Heat of formation + Delta-G solvation = -10.728777 kcal Electronic energy + Delta-G solvation = -29441.749556 eV Core-core repulsion = 25312.500382 eV Total energy + Delta-G solvation = -4129.249175 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.90585 -39.80824 -38.53154 -37.51273 -35.69964 -34.94476 -34.12035 -31.67152 -30.61074 -30.31889 -30.03933 -28.56141 -26.21505 -25.08055 -23.68619 -23.42875 -22.50194 -21.62548 -20.75746 -19.76460 -19.45202 -17.86538 -17.75106 -16.95992 -16.93764 -16.38395 -16.02984 -15.87829 -15.52026 -15.21763 -15.08092 -14.84330 -14.53995 -14.19111 -14.11617 -13.97830 -13.90797 -13.70952 -13.36580 -13.05520 -12.88349 -12.52522 -12.48751 -12.23297 -12.12264 -11.97922 -11.74676 -11.66257 -11.37984 -10.90344 -10.61556 -10.38145 -10.32813 -10.10666 -10.06985 -9.82794 -9.55845 -9.46558 -9.27534 -9.04882 -8.65920 -8.10402 -6.96919 -5.94645 -3.29995 2.23577 2.35360 2.55691 2.84109 3.26843 3.31600 3.49746 3.54459 4.04939 4.12088 4.16409 4.35636 4.50445 4.52903 4.53589 4.68911 4.79592 4.81726 4.82826 4.95173 4.96227 5.02257 5.19317 5.30909 5.32776 5.37738 5.60126 5.67707 5.75454 5.87442 5.91078 5.99358 6.04544 6.05822 6.12905 6.16941 6.21049 6.36437 6.39559 6.56177 6.64385 6.83159 6.87384 7.19044 7.32247 7.37535 7.79941 7.94094 7.97141 8.32482 8.93028 9.71796 10.10959 11.21348 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.030663 B = 0.001768 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.920974 B =15835.836157 C =16309.139982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.884 3.116 4 H -0.289 1.289 5 H -0.303 1.303 6 H -0.269 1.269 7 C -0.259 4.259 8 H 0.086 0.914 9 N -0.609 5.609 10 C 0.130 3.870 11 C 0.045 3.955 12 N -0.531 5.531 13 C 0.045 3.955 14 C 0.122 3.878 15 N -0.730 5.730 16 C 0.510 3.490 17 O -0.518 6.518 18 C 0.035 3.965 19 N -0.515 5.515 20 C 0.032 3.968 21 C 0.117 3.883 22 N -0.722 5.722 23 C 0.529 3.471 24 O -0.550 6.550 25 C 0.033 3.967 26 C 0.037 3.963 27 C 0.151 3.849 28 H 0.262 0.738 29 H 0.033 0.967 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.398 0.602 38 H 0.112 0.888 39 H 0.070 0.930 40 H 0.100 0.900 41 H 0.049 0.951 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.401 0.599 45 H 0.070 0.930 46 H 0.134 0.866 47 H 0.034 0.966 48 H 0.070 0.930 49 H 0.032 0.968 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.877 -11.689 -17.392 34.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.178 4.178 3 Si 0.715 3.285 4 H -0.217 1.217 5 H -0.232 1.232 6 H -0.194 1.194 7 C -0.387 4.387 8 H 0.103 0.897 9 N -0.333 5.333 10 C 0.004 3.996 11 C -0.084 4.084 12 N -0.256 5.256 13 C -0.084 4.084 14 C -0.001 4.001 15 N -0.383 5.383 16 C 0.295 3.705 17 O -0.392 6.392 18 C -0.096 4.096 19 N -0.241 5.241 20 C -0.096 4.096 21 C -0.008 4.008 22 N -0.375 5.375 23 C 0.316 3.684 24 O -0.426 6.426 25 C -0.097 4.097 26 C -0.092 4.092 27 C 0.025 3.975 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.094 0.906 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.096 0.904 37 H 0.232 0.768 38 H 0.130 0.870 39 H 0.088 0.912 40 H 0.118 0.882 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.237 0.763 45 H 0.088 0.912 46 H 0.152 0.848 47 H 0.052 0.948 48 H 0.088 0.912 49 H 0.050 0.950 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 27.213 -11.382 -15.473 33.310 hybrid contribution -0.392 -0.015 -1.621 1.668 sum 26.821 -11.398 -17.094 33.786 Atomic orbital electron populations 1.69833 1.05715 1.26541 1.53190 1.25268 0.95259 0.97618 0.99618 0.86947 0.80042 0.84522 0.77030 1.21675 1.23170 1.19424 1.18935 0.84762 0.94821 1.40171 0.89668 1.44418 1.08514 1.32165 1.48180 1.21432 0.96530 0.91996 0.89680 1.22647 0.92628 0.95334 0.97778 1.61840 1.24733 1.18924 1.20136 1.22200 0.94304 0.97807 0.94085 1.21375 0.91893 0.97395 0.89474 1.45921 1.26906 1.54728 1.10729 1.20373 0.80737 0.78975 0.90418 1.90736 1.69217 1.58715 1.20558 1.22060 0.92431 0.99545 0.95600 1.62147 1.14093 1.24101 1.23718 1.22575 0.92729 1.00892 0.93396 1.21476 0.96726 0.92862 0.89745 1.45539 1.11396 1.40777 1.39815 1.20078 0.84370 0.82423 0.81571 1.90794 1.84320 1.37446 1.30077 1.22530 0.95477 0.90267 1.01475 1.22746 0.96908 0.93123 0.96387 1.21013 0.92095 0.91626 0.92769 0.92789 0.94884 0.90672 0.91577 0.94521 0.90610 0.94697 0.91102 0.90352 0.76793 0.87039 0.91237 0.88187 0.93310 0.90526 0.89915 0.76350 0.91239 0.84820 0.94778 0.91188 0.95032 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.90 13.97 55.49 0.78 -27.13 16 2 C 0.02 0.61 5.24 -17.43 -0.09 0.52 16 3 Si 0.88 22.45 24.31 -169.99 -4.13 18.32 16 4 H -0.29 -6.99 6.58 56.52 0.37 -6.61 16 5 H -0.30 -7.85 7.11 56.52 0.40 -7.45 16 6 H -0.27 -6.81 6.61 56.52 0.37 -6.44 16 7 C -0.26 -7.26 10.08 -15.06 -0.15 -7.41 16 8 H 0.09 2.55 8.06 -52.48 -0.42 2.12 16 9 N -0.61 -14.58 2.82 -172.01 -0.48 -15.07 16 10 C 0.13 2.82 4.35 -3.61 -0.02 2.81 16 11 C 0.05 0.78 5.62 -3.70 -0.02 0.76 16 12 N -0.53 -8.28 4.63 -234.33 -1.08 -9.36 16 13 C 0.04 0.51 5.08 -3.83 -0.02 0.49 16 14 C 0.12 1.33 5.60 -4.05 -0.02 1.31 16 15 N -0.73 -5.77 5.56 -60.29 -0.33 -6.10 16 16 C 0.51 4.74 7.59 -10.98 -0.08 4.65 16 17 O -0.52 -7.28 14.39 5.56 0.08 -7.20 16 18 C 0.03 0.18 5.44 -4.97 -0.03 0.15 16 19 N -0.51 -3.56 4.45 -237.55 -1.06 -4.62 16 20 C 0.03 0.11 5.60 -3.67 -0.02 0.09 16 21 C 0.12 0.41 7.39 -4.31 -0.03 0.38 16 22 N -0.72 -4.92 5.52 -61.06 -0.34 -5.26 16 23 C 0.53 5.59 7.81 -11.68 -0.09 5.50 16 24 O -0.55 -8.19 17.83 5.55 0.10 -8.09 16 25 C 0.03 0.30 5.16 -5.19 -0.03 0.27 16 26 C 0.04 0.62 5.46 -3.70 -0.02 0.60 16 27 C 0.15 3.03 6.69 -3.60 -0.02 3.00 16 28 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 29 H 0.03 0.74 6.94 -51.92 -0.36 0.38 16 30 H 0.08 1.77 4.61 -51.93 -0.24 1.53 16 31 H 0.07 0.98 7.99 -51.93 -0.41 0.56 16 32 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.75 7.97 -51.93 -0.41 0.33 16 34 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 35 H 0.07 0.88 6.40 -51.93 -0.33 0.55 16 36 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 37 H 0.40 1.86 8.47 -40.82 -0.35 1.52 16 38 H 0.11 0.30 7.91 -51.93 -0.41 -0.11 16 39 H 0.07 0.23 8.03 -51.93 -0.42 -0.19 16 40 H 0.10 0.13 7.90 -51.93 -0.41 -0.28 16 41 H 0.05 0.14 8.08 -51.93 -0.42 -0.28 16 42 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.08 0.07 8.14 -51.93 -0.42 -0.35 16 44 H 0.40 2.29 8.84 -40.82 -0.36 1.93 16 45 H 0.07 0.52 8.03 -51.93 -0.42 0.10 16 46 H 0.13 1.62 6.09 -51.93 -0.32 1.30 16 47 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 48 H 0.07 1.01 6.16 -51.93 -0.32 0.69 16 49 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 50 H 0.07 1.30 7.95 -51.92 -0.41 0.89 16 LS Contribution 385.59 15.07 5.81 5.81 Total: -1.00 -37.60 385.59 -9.48 -47.08 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: -8.17 Total: -1.50 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: -0.65 Total: 13.12 kcal Atomic # 7 Polarization: -65.01 SS G_CDS: -2.52 Total: -67.54 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: 0.18 Total: -15.29 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.13 Total: 18.32 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -37.60 -9.48 -47.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713810180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.354 kcal (2) G-P(sol) polarization free energy of solvation -37.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds