Wall clock time and date at job start Sat Apr 11 2020 05:49:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86797 * 119.99990 * 2 1 4 4 H 1.48504 * 109.46943 * 271.97672 * 3 2 1 5 5 H 1.48500 * 109.47242 * 31.97473 * 3 2 1 6 6 H 1.48505 * 109.47338 * 151.97877 * 3 2 1 7 7 C 1.38811 * 120.00173 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00089 * 339.43592 * 7 2 1 9 9 N 1.36939 * 120.00315 * 159.44439 * 7 2 1 10 10 C 1.47077 * 120.87789 * 333.50162 * 9 7 2 11 11 C 1.53234 * 108.52473 * 231.16592 * 10 9 7 12 12 N 1.46906 * 109.34115 * 306.17146 * 11 10 9 13 13 C 1.46896 * 111.00145 * 187.25037 * 12 11 10 14 14 C 1.52995 * 109.47176 * 170.00267 * 13 12 11 15 15 N 1.46497 * 109.47600 * 179.97438 * 14 13 12 16 16 C 1.34777 * 120.00312 * 179.97438 * 15 14 13 17 17 O 1.21282 * 119.99921 * 0.02562 * 16 15 14 18 18 C 1.50703 * 119.99894 * 179.97438 * 16 15 14 19 19 N 1.46904 * 109.46984 * 180.02562 * 18 16 15 20 20 C 1.47183 * 110.99802 * 190.00391 * 19 18 16 21 21 C 1.52990 * 108.72853 * 167.63777 * 20 19 18 22 22 N 1.46004 * 110.04098 * 50.28981 * 21 20 19 23 23 C 1.33713 * 122.92809 * 341.83944 * 22 21 20 24 24 O 1.21289 * 118.62125 * 181.40449 * 23 22 21 25 25 C 1.46902 * 110.99747 * 67.11131 * 19 18 16 26 26 C 1.46900 * 111.26474 * 63.10356 * 12 11 10 27 27 C 1.47079 * 120.88507 * 153.48584 * 9 7 2 28 28 H 0.97001 * 120.00229 * 0.02562 * 1 2 3 29 29 H 1.09010 * 109.62504 * 111.45774 * 10 9 7 30 30 H 1.08998 * 109.79414 * 350.97575 * 10 9 7 31 31 H 1.08996 * 109.49788 * 186.21418 * 11 10 9 32 32 H 1.09000 * 109.49736 * 66.13068 * 11 10 9 33 33 H 1.09001 * 109.46895 * 50.00622 * 13 12 11 34 34 H 1.08999 * 109.47588 * 290.00318 * 13 12 11 35 35 H 1.09006 * 109.47539 * 59.99725 * 14 13 12 36 36 H 1.09005 * 109.47183 * 300.00173 * 14 13 12 37 37 H 0.97005 * 119.99816 * 0.02562 * 15 14 13 38 38 H 1.09001 * 109.46718 * 60.01165 * 18 16 15 39 39 H 1.08991 * 109.47413 * 300.00902 * 18 16 15 40 40 H 1.08999 * 109.59882 * 47.86700 * 20 19 18 41 41 H 1.09004 * 109.59898 * 287.40875 * 20 19 18 42 42 H 1.09003 * 109.37427 * 290.11692 * 21 20 19 43 43 H 1.09000 * 109.28150 * 170.41036 * 21 20 19 44 44 H 0.96998 * 118.53528 * 161.81465 * 22 21 20 45 45 H 1.09001 * 109.38583 * 53.50751 * 25 19 18 46 46 H 1.08997 * 109.38521 * 293.82045 * 25 19 18 47 47 H 1.08999 * 109.49350 * 56.85590 * 26 12 11 48 48 H 1.09002 * 109.49049 * 176.93709 * 26 12 11 49 49 H 1.08994 * 109.62828 * 248.54592 * 27 9 7 50 50 H 1.09010 * 109.62667 * 9.12752 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.4558 2.0705 -1.3993 5 1 1.4691 2.6402 0.7414 6 1 3.5680 1.4285 0.6578 7 6 2.0102 -1.2021 -0.0005 8 1 1.5219 -2.1078 0.3276 9 7 3.3142 -1.2397 -0.4169 10 6 3.8306 -0.2473 -1.3717 11 6 4.5271 -0.9899 -2.5169 12 7 5.5363 -1.9023 -1.9626 13 6 6.3439 -2.5058 -3.0309 14 6 7.5325 -3.2466 -2.4152 15 7 8.3376 -3.8490 -3.4805 16 6 9.4432 -4.5555 -3.1723 17 8 9.7714 -4.6928 -2.0128 18 6 10.2711 -5.1756 -4.2682 19 7 11.4124 -5.8868 -3.6770 20 6 12.3700 -6.3022 -4.7146 21 6 13.6651 -6.7524 -4.0360 22 7 13.3675 -7.7125 -2.9771 23 6 12.1500 -7.8499 -2.4417 24 8 11.9960 -8.6546 -1.5473 25 6 10.9633 -7.0536 -2.9057 26 6 4.9161 -2.9363 -1.1234 27 6 4.2356 -2.2733 0.0789 28 1 -0.4850 0.8400 -0.0004 29 1 4.5454 0.4056 -0.8705 30 1 3.0073 0.3470 -1.7679 31 1 5.0111 -0.2697 -3.1764 32 1 3.7903 -1.5620 -3.0808 33 1 6.7086 -1.7235 -3.6966 34 1 5.7316 -3.2081 -3.5967 35 1 7.1678 -4.0289 -1.7494 36 1 8.1448 -2.5443 -1.8494 37 1 8.0753 -3.7389 -4.4080 38 1 10.6355 -4.3940 -4.9348 39 1 9.6585 -5.8783 -4.8330 40 1 12.5777 -5.4624 -5.3777 41 1 11.9515 -7.1291 -5.2885 42 1 14.1689 -5.8860 -3.6075 43 1 14.3154 -7.2197 -4.7756 44 1 14.0849 -8.2761 -2.6475 45 1 10.3300 -7.6805 -3.5335 46 1 10.3924 -6.7173 -2.0402 47 1 4.1738 -3.4812 -1.7067 48 1 5.6823 -3.6275 -0.7722 49 1 4.9891 -1.8153 0.7195 50 1 3.6777 -3.0214 0.6423 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713810180.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:03 Heat of formation + Delta-G solvation = -45.913540 kcal Electronic energy + Delta-G solvation = -29443.275282 eV Core-core repulsion = 25312.500382 eV Total energy + Delta-G solvation = -4130.774900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.206 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.53138 -40.59784 -39.87557 -38.18196 -36.93689 -35.58540 -35.34097 -33.62593 -32.07395 -31.06970 -30.77107 -29.50109 -27.57080 -25.78563 -25.19468 -24.24608 -23.85199 -22.74554 -21.49836 -20.99884 -20.26542 -18.84337 -18.47790 -18.34612 -17.57083 -17.35536 -17.13716 -16.70832 -16.67821 -16.06293 -16.00334 -15.82828 -15.67382 -15.49368 -15.41807 -15.23786 -14.81277 -14.56020 -14.45761 -14.32515 -13.93566 -13.78122 -13.49442 -13.38650 -13.01133 -12.94864 -12.68891 -12.57332 -12.45354 -12.37987 -12.20108 -12.08403 -11.76667 -11.64500 -11.44263 -11.17341 -10.81921 -10.71859 -10.12905 -10.04370 -9.48391 -9.40211 -8.91241 -8.17525 -5.49338 1.28779 1.42495 1.46936 1.52152 1.69979 1.95902 2.28701 2.40854 2.72500 3.00878 3.09556 3.34744 3.55835 3.81106 3.86249 3.90246 4.03737 4.09396 4.16053 4.21943 4.29003 4.34506 4.42416 4.43914 4.45444 4.50601 4.59128 4.59864 4.63577 4.69964 4.78642 4.80229 4.90589 4.96596 5.01285 5.01693 5.05745 5.27266 5.45257 5.61494 5.67426 5.81329 5.93611 6.05214 6.07262 6.18555 6.21969 6.63946 6.88579 7.11181 7.35479 7.59753 8.02162 9.02318 Molecular weight = 339.21amu Principal moments of inertia in cm(-1) A = 0.030663 B = 0.001768 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.920974 B =15835.836157 C =16309.139982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.036 4.036 3 Si 0.950 3.050 4 H -0.267 1.267 5 H -0.311 1.311 6 H -0.268 1.268 7 C -0.250 4.250 8 H 0.051 0.949 9 N -0.623 5.623 10 C 0.122 3.878 11 C 0.057 3.943 12 N -0.541 5.541 13 C 0.054 3.946 14 C 0.132 3.868 15 N -0.715 5.715 16 C 0.504 3.496 17 O -0.574 6.574 18 C 0.042 3.958 19 N -0.534 5.534 20 C 0.031 3.969 21 C 0.108 3.892 22 N -0.711 5.711 23 C 0.520 3.480 24 O -0.609 6.609 25 C 0.040 3.960 26 C 0.051 3.949 27 C 0.144 3.856 28 H 0.262 0.738 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.101 0.899 32 H 0.029 0.971 33 H 0.101 0.899 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.418 0.582 38 H 0.149 0.851 39 H 0.098 0.902 40 H 0.132 0.868 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.118 0.882 44 H 0.405 0.595 45 H 0.084 0.916 46 H 0.097 0.903 47 H 0.026 0.974 48 H 0.092 0.908 49 H 0.033 0.967 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.018 -10.963 -21.351 38.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.603 5.603 2 C -0.231 4.231 3 Si 0.779 3.221 4 H -0.193 1.193 5 H -0.240 1.240 6 H -0.192 1.192 7 C -0.380 4.380 8 H 0.069 0.931 9 N -0.349 5.349 10 C -0.003 4.003 11 C -0.072 4.072 12 N -0.266 5.266 13 C -0.074 4.074 14 C 0.007 3.993 15 N -0.369 5.369 16 C 0.291 3.709 17 O -0.452 6.452 18 C -0.088 4.088 19 N -0.260 5.260 20 C -0.096 4.096 21 C -0.015 4.015 22 N -0.362 5.362 23 C 0.308 3.692 24 O -0.491 6.491 25 C -0.090 4.090 26 C -0.078 4.078 27 C 0.019 3.981 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.119 0.881 32 H 0.047 0.953 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.256 0.744 38 H 0.166 0.834 39 H 0.116 0.884 40 H 0.150 0.850 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.136 0.864 44 H 0.241 0.759 45 H 0.102 0.898 46 H 0.115 0.885 47 H 0.044 0.956 48 H 0.110 0.890 49 H 0.051 0.949 50 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 30.431 -10.641 -19.543 37.699 hybrid contribution -1.284 -0.311 -0.405 1.382 sum 29.147 -10.952 -19.948 36.978 Atomic orbital electron populations 1.69961 1.07367 1.27268 1.55710 1.25896 0.95885 1.00988 1.00308 0.85876 0.78281 0.79984 0.77969 1.19292 1.23992 1.19246 1.18870 0.86556 0.93631 1.38929 0.93143 1.44554 1.07651 1.33475 1.49188 1.21487 0.96137 0.92001 0.90682 1.22437 0.92926 0.95931 0.95955 1.61753 1.24099 1.18968 1.21791 1.22204 0.93547 0.98716 0.92974 1.21059 0.91785 0.96412 0.90042 1.45737 1.26201 1.53896 1.11104 1.21245 0.80772 0.78206 0.90722 1.90731 1.70651 1.60652 1.23190 1.22160 0.91899 1.00670 0.94094 1.62078 1.15273 1.23232 1.25447 1.22764 0.91401 1.02631 0.92762 1.21844 0.97726 0.92422 0.89481 1.45605 1.10238 1.40646 1.39717 1.20432 0.85807 0.81935 0.81065 1.90753 1.85459 1.40048 1.32807 1.22261 0.94645 0.91200 1.00931 1.22514 0.97080 0.93180 0.95042 1.21170 0.91545 0.90775 0.94572 0.92899 0.94872 0.92600 0.88058 0.95275 0.88059 0.93400 0.93028 0.92289 0.74441 0.83378 0.88435 0.84964 0.92095 0.90431 0.86395 0.75928 0.89799 0.88512 0.95558 0.89011 0.94906 0.92323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -60.54 13.97 21.65 0.30 -60.23 16 2 C -0.04 -2.13 5.24 84.86 0.45 -1.69 16 3 Si 0.95 47.00 24.31 68.60 1.67 48.67 16 4 H -0.27 -12.11 6.58 99.48 0.65 -11.46 16 5 H -0.31 -15.64 7.11 99.48 0.71 -14.93 16 6 H -0.27 -13.00 6.61 99.48 0.66 -12.34 16 7 C -0.25 -14.47 10.08 84.03 0.85 -13.62 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 9 N -0.62 -29.98 2.82 -698.13 -1.97 -31.94 16 10 C 0.12 5.14 4.35 86.35 0.38 5.51 16 11 C 0.06 1.80 5.62 86.38 0.49 2.28 16 12 N -0.54 -15.42 4.63 -895.27 -4.15 -19.56 16 13 C 0.05 1.01 5.08 86.30 0.44 1.45 16 14 C 0.13 2.58 5.60 86.38 0.48 3.07 16 15 N -0.71 -9.14 5.56 -463.06 -2.57 -11.71 16 16 C 0.50 8.30 7.59 87.66 0.67 8.97 16 17 O -0.57 -16.19 14.39 -3.04 -0.04 -16.24 16 18 C 0.04 0.27 5.44 85.56 0.47 0.74 16 19 N -0.53 -5.97 4.45 -905.47 -4.03 -10.00 16 20 C 0.03 0.08 5.60 86.25 0.48 0.57 16 21 C 0.11 0.41 7.39 86.47 0.64 1.05 16 22 N -0.71 -8.84 5.52 -466.08 -2.57 -11.41 16 23 C 0.52 11.13 7.81 87.68 0.69 11.82 16 24 O -0.61 -19.26 17.83 -3.06 -0.05 -19.31 16 25 C 0.04 0.72 5.16 85.42 0.44 1.16 16 26 C 0.05 1.61 5.46 86.38 0.47 2.08 16 27 C 0.14 5.79 6.69 86.35 0.58 6.37 16 28 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.03 1.41 6.94 -2.38 -0.02 1.39 16 30 H 0.06 2.56 4.61 -2.39 -0.01 2.55 16 31 H 0.10 2.53 7.99 -2.39 -0.02 2.51 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.10 1.47 7.97 -2.39 -0.02 1.45 16 34 H 0.05 0.83 8.12 -2.39 -0.02 0.82 16 35 H 0.05 1.22 6.40 -2.38 -0.02 1.21 16 36 H 0.06 1.41 8.14 -2.38 -0.02 1.40 16 37 H 0.42 2.03 8.47 -92.70 -0.79 1.24 16 38 H 0.15 -0.08 7.91 -2.39 -0.02 -0.10 16 39 H 0.10 0.16 8.03 -2.39 -0.02 0.14 16 40 H 0.13 -0.45 7.90 -2.39 -0.02 -0.47 16 41 H 0.06 0.06 8.08 -2.39 -0.02 0.05 16 42 H 0.08 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.12 -0.32 8.14 -2.39 -0.02 -0.34 16 44 H 0.40 4.32 8.84 -92.71 -0.82 3.50 16 45 H 0.08 1.15 8.03 -2.39 -0.02 1.13 16 46 H 0.10 2.50 6.09 -2.39 -0.01 2.49 16 47 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 48 H 0.09 2.52 6.16 -2.39 -0.01 2.51 16 49 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.06 2.38 7.95 -2.38 -0.02 2.36 16 Total: -1.00 -88.71 385.59 -6.65 -95.37 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -0.74 Total: 6.62 kcal Atomic # 6 Polarization: 22.25 SS G_CDS: 7.50 Total: 29.75 kcal Atomic # 7 Polarization: -129.87 SS G_CDS: -14.98 Total: -144.85 kcal Atomic # 8 Polarization: -35.45 SS G_CDS: -0.10 Total: -35.55 kcal Atomic # 14 Polarization: 47.00 SS G_CDS: 1.67 Total: 48.67 kcal Total: -88.71 -6.65 -95.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713810180.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.454 kcal (2) G-P(sol) polarization free energy of solvation -88.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds