Wall clock time and date at job start Sat Apr 11 2020 05:49:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 114.00336 * 2 1 4 4 C 1.50697 * 109.47182 * 179.97438 * 3 2 1 5 5 O 1.21281 * 120.00441 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99643 * 179.97438 * 4 3 2 7 7 C 1.48187 * 127.79810 * 359.97438 * 6 4 3 8 8 C 1.54510 * 104.62925 * 140.71120 * 7 6 4 9 9 C 1.53809 * 104.78609 * 23.79703 * 8 7 6 10 10 C 1.48256 * 127.79436 * 179.97438 * 6 4 3 11 11 C 1.52551 * 110.21135 * 118.74902 * 9 8 7 12 12 C 1.53143 * 109.31745 * 65.70870 * 11 9 8 13 13 N 1.46844 * 109.45875 * 58.28867 * 12 11 9 14 14 C 1.46902 * 111.00342 * 173.66800 * 13 12 11 15 15 C 1.50707 * 109.46770 * 293.64910 * 14 13 12 16 16 O 1.21292 * 119.99947 * 353.77623 * 15 14 13 17 17 N 1.34776 * 119.99795 * 173.78168 * 15 14 13 18 18 C 1.37096 * 119.99940 * 180.02562 * 17 15 14 19 19 H 1.08000 * 119.99857 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00269 * 179.97438 * 18 17 15 21 21 N 1.31403 * 120.00267 * 179.97438 * 20 18 17 22 22 Si 1.86804 * 119.99768 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47211 * 89.99775 * 22 20 18 24 24 H 1.48498 * 109.47284 * 210.00253 * 22 20 18 25 25 H 1.48500 * 109.47097 * 330.00081 * 22 20 18 26 26 C 1.46850 * 111.30106 * 297.84023 * 13 12 11 27 27 C 1.52548 * 110.22451 * 240.93183 * 9 8 7 28 28 H 1.08993 * 109.46963 * 300.00150 * 1 2 3 29 29 H 1.08995 * 109.46791 * 60.00055 * 1 2 3 30 30 H 1.09001 * 109.47186 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47154 * 59.99942 * 3 2 1 32 32 H 1.09001 * 109.46942 * 299.99829 * 3 2 1 33 33 H 1.08996 * 110.40929 * 21.91648 * 7 6 4 34 34 H 1.09000 * 110.49851 * 259.53953 * 7 6 4 35 35 H 1.09004 * 110.37319 * 264.97199 * 8 7 6 36 36 H 1.08998 * 110.38001 * 142.63066 * 8 7 6 37 37 H 1.09003 * 110.42347 * 100.37133 * 10 6 4 38 38 H 1.09001 * 110.42953 * 337.89486 * 10 6 4 39 39 H 1.09002 * 109.50249 * 305.75708 * 11 9 8 40 40 H 1.08998 * 109.49986 * 185.65981 * 11 9 8 41 41 H 1.08998 * 109.46935 * 298.29777 * 12 11 9 42 42 H 1.08995 * 109.47727 * 178.28544 * 12 11 9 43 43 H 1.08995 * 109.46708 * 53.64179 * 14 13 12 44 44 H 1.08998 * 109.47378 * 173.64569 * 14 13 12 45 45 H 0.97002 * 119.99761 * 359.97438 * 17 15 14 46 46 H 0.97004 * 120.00403 * 179.97438 * 21 20 18 47 47 H 1.08997 * 109.47688 * 182.16276 * 26 13 12 48 48 H 1.09008 * 109.46964 * 302.16363 * 26 13 12 49 49 H 1.09000 * 109.49669 * 54.24646 * 27 9 8 50 50 H 1.09002 * 109.50060 * 174.34102 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 0.0006 5 8 4.0342 0.0914 0.0006 6 7 4.2765 2.2967 0.0002 7 6 3.8266 3.7087 -0.0014 8 6 4.8099 4.4326 0.9454 9 6 6.0751 3.5579 0.9408 10 6 5.7567 2.3812 0.0012 11 6 7.2628 4.3520 0.4061 12 6 7.5885 5.4914 1.3762 13 7 7.8834 4.9351 2.7028 14 6 8.3462 5.9831 3.6223 15 6 9.6800 6.5073 3.1559 16 8 10.2474 5.9778 2.2238 17 7 10.2422 7.5645 3.7746 18 6 11.4553 8.0417 3.3500 19 1 11.9605 7.5702 2.5200 20 6 12.0348 9.1318 3.9875 21 7 13.1977 9.5889 3.5809 22 14 11.1605 9.9477 5.4227 23 1 11.5794 9.2988 6.6910 24 1 11.5150 11.3892 5.4635 25 1 9.6922 9.8037 5.2544 26 6 6.7214 4.2266 3.2545 27 6 6.3666 3.0448 2.3475 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8463 -0.8900 33 1 2.8080 3.7834 0.3791 34 1 3.8881 4.1277 -1.0057 35 1 4.3937 4.4926 1.9511 36 1 5.0363 5.4296 0.5674 37 1 6.1267 2.5856 -1.0035 38 1 6.1902 1.4584 0.3868 39 1 7.0135 4.7662 -0.5708 40 1 8.1276 3.6950 0.3132 41 1 6.7340 6.1644 1.4462 42 1 8.4559 6.0419 1.0121 43 1 7.6217 6.7973 3.6393 44 1 8.4494 5.5675 4.6246 45 1 9.7882 7.9881 4.5198 46 1 13.6021 10.3502 4.0257 47 1 6.9598 3.8598 4.2528 48 1 5.8731 4.9088 3.3110 49 1 5.4852 2.5373 2.7395 50 1 7.2037 2.3475 2.3143 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716723186.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:29 Heat of formation + Delta-G solvation = -93.745606 kcal Electronic energy + Delta-G solvation = -30103.656977 eV Core-core repulsion = 25938.515172 eV Total energy + Delta-G solvation = -4165.141806 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.199 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.90296 -39.48610 -38.45318 -37.65576 -36.51506 -34.02433 -33.32683 -31.66326 -30.90322 -30.16279 -29.83071 -28.21834 -26.62042 -25.49000 -23.94750 -23.52230 -23.21344 -21.59128 -19.85724 -19.34727 -18.52399 -18.26365 -17.61674 -16.89570 -16.70369 -16.01170 -15.96782 -15.80284 -15.49092 -15.13658 -14.90338 -14.56905 -14.39960 -14.19589 -13.93450 -13.53366 -13.37634 -13.31216 -13.15916 -12.89447 -12.64607 -12.53915 -12.35305 -12.18102 -11.93243 -11.87586 -11.78331 -11.68482 -11.32356 -11.14395 -11.09318 -10.68662 -10.60478 -10.43089 -10.29462 -10.27766 -10.02719 -9.97588 -9.52913 -9.04072 -8.54240 -8.17555 -7.92968 -6.31140 -3.82399 2.28825 2.29571 3.01174 3.06053 3.14206 3.49068 3.75100 3.91047 4.07177 4.09911 4.24971 4.42686 4.45543 4.57856 4.66470 4.75492 4.82200 4.84218 4.88922 4.91742 4.97311 5.18249 5.19816 5.20816 5.23615 5.32492 5.43140 5.44265 5.49983 5.56935 5.61801 5.63124 5.67374 5.73464 5.80452 5.87103 5.96341 6.02115 6.08203 6.17942 6.36316 6.40823 6.51569 7.18872 7.20492 7.35910 7.59112 7.84963 8.14926 8.60777 8.95734 9.42893 9.84490 10.82044 Molecular weight = 339.20amu Principal moments of inertia in cm(-1) A = 0.034373 B = 0.001951 C = 0.001918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.389370 B =14348.787446 C =14597.450149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.049 3.951 4 C 0.534 3.466 5 O -0.519 6.519 6 N -0.624 5.624 7 C 0.099 3.901 8 C -0.129 4.129 9 C -0.070 4.070 10 C 0.117 3.883 11 C -0.098 4.098 12 C 0.057 3.943 13 N -0.514 5.514 14 C 0.044 3.956 15 C 0.452 3.548 16 O -0.557 6.557 17 N -0.593 5.593 18 C -0.304 4.304 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.882 5.882 22 Si 0.879 3.121 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C 0.057 3.943 27 C -0.098 4.098 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.067 0.933 40 H 0.079 0.921 41 H 0.024 0.976 42 H 0.098 0.902 43 H 0.045 0.955 44 H 0.090 0.910 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.073 0.927 48 H 0.030 0.970 49 H 0.063 0.937 50 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.256 -10.016 -4.234 29.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.285 6.285 3 C -0.031 4.031 4 C 0.321 3.679 5 O -0.394 6.394 6 N -0.360 5.360 7 C -0.024 4.024 8 C -0.167 4.167 9 C -0.071 4.071 10 C -0.005 4.005 11 C -0.136 4.136 12 C -0.071 4.071 13 N -0.239 5.239 14 C -0.087 4.087 15 C 0.238 3.762 16 O -0.438 6.438 17 N -0.233 5.233 18 C -0.433 4.433 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.522 5.522 22 Si 0.706 3.294 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.071 4.071 27 C -0.136 4.136 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.102 0.898 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.086 0.914 40 H 0.097 0.903 41 H 0.042 0.958 42 H 0.116 0.884 43 H 0.063 0.937 44 H 0.108 0.892 45 H 0.202 0.798 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.048 0.952 49 H 0.082 0.918 50 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -26.001 -11.454 -4.912 28.834 hybrid contribution -1.483 1.839 1.381 2.736 sum -27.484 -9.616 -3.530 29.331 Atomic orbital electron populations 1.22850 0.80216 1.03448 1.00151 1.88020 1.19895 1.25170 1.95415 1.22191 0.91492 0.86955 1.02502 1.19807 0.88177 0.83120 0.76754 1.90754 1.74425 1.25687 1.48518 1.48953 1.07865 1.05559 1.73638 1.22506 0.98744 0.80758 1.00399 1.22709 0.94780 0.99207 1.00023 1.21186 0.95316 0.94677 0.95952 1.22444 0.79016 0.99375 0.99681 1.21530 0.96978 0.97454 0.97667 1.22206 1.00516 0.95508 0.88862 1.61426 1.32667 1.27484 1.02300 1.21872 0.96045 0.93762 0.97045 1.19674 0.87504 0.82799 0.86248 1.90549 1.64181 1.59178 1.29910 1.42233 1.20523 1.28971 1.31534 1.19423 0.94237 1.12572 1.17023 0.86277 1.25028 0.96021 0.96977 0.98131 1.69617 1.15946 1.25478 1.41166 0.86682 0.79502 0.80103 0.83132 1.19634 1.20236 1.19592 1.22124 0.91380 0.95421 0.98213 1.21536 1.01366 0.97537 0.93148 0.93750 0.93761 0.88961 0.90296 0.90300 0.90567 0.90617 0.90669 0.89758 0.90661 0.89557 0.91424 0.90277 0.95799 0.88351 0.93677 0.89222 0.79794 0.91647 0.90843 0.95226 0.91805 0.90574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.37 -3.72 10.24 -55.14 -0.56 -4.29 16 3 C 0.05 0.38 5.40 36.00 0.19 0.57 16 4 C 0.53 6.03 7.99 -10.99 -0.09 5.94 16 5 O -0.52 -8.35 16.77 -14.35 -0.24 -8.59 16 6 N -0.62 -5.74 3.32 -169.40 -0.56 -6.30 16 7 C 0.10 0.60 6.92 -2.32 -0.02 0.58 16 8 C -0.13 -0.94 5.29 -25.52 -0.13 -1.08 16 9 C -0.07 -0.67 0.68 -154.07 -0.11 -0.77 16 10 C 0.12 1.15 6.13 -2.60 -0.02 1.14 16 11 C -0.10 -1.12 4.57 -26.89 -0.12 -1.25 16 12 C 0.06 0.80 4.93 -3.78 -0.02 0.79 16 13 N -0.51 -7.73 4.33 -235.98 -1.02 -8.75 16 14 C 0.04 0.72 5.45 -4.97 -0.03 0.69 16 15 C 0.45 9.99 7.31 -10.98 -0.08 9.91 16 16 O -0.56 -14.48 14.29 5.55 0.08 -14.40 16 17 N -0.59 -13.85 5.09 -10.96 -0.06 -13.91 16 18 C -0.30 -8.48 10.16 -14.93 -0.15 -8.63 16 19 H 0.12 3.81 7.39 -52.49 -0.39 3.42 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.57 13.96 55.50 0.77 -24.80 16 22 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 23 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.34 6.52 56.52 0.37 -4.97 16 26 C 0.06 0.65 5.27 -3.78 -0.02 0.63 16 27 C -0.10 -1.03 4.57 -26.89 -0.12 -1.15 16 28 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.43 7.95 -51.93 -0.41 0.02 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.30 7.31 -51.93 -0.38 -0.08 16 34 H 0.08 0.39 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.54 6.77 -51.93 -0.35 0.19 16 36 H 0.08 0.60 6.76 -51.93 -0.35 0.25 16 37 H 0.08 0.70 7.85 -51.93 -0.41 0.29 16 38 H 0.09 1.00 7.58 -51.93 -0.39 0.60 16 39 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.02 0.30 6.89 -51.93 -0.36 -0.06 16 42 H 0.10 1.78 6.05 -51.93 -0.31 1.47 16 43 H 0.05 0.64 8.12 -51.93 -0.42 0.22 16 44 H 0.09 1.29 7.97 -51.93 -0.41 0.87 16 45 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 46 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.07 0.81 8.00 -51.93 -0.42 0.39 16 48 H 0.03 0.31 6.90 -51.92 -0.36 -0.05 16 49 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.08 0.91 8.13 -51.93 -0.42 0.48 16 LS Contribution 390.50 15.07 5.88 5.88 Total: -1.00 -35.90 390.50 -8.29 -44.19 By element: Atomic # 1 Polarization: 15.04 SS G_CDS: -8.17 Total: 6.87 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 0.31 Total: 9.67 kcal Atomic # 7 Polarization: -52.90 SS G_CDS: -0.87 Total: -53.76 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: -0.73 Total: -27.28 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -35.90 -8.29 -44.19 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716723186.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.560 kcal (2) G-P(sol) polarization free energy of solvation -35.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds