Wall clock time and date at job start Sat Apr 11 2020 05:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46853 * 110.98913 * 2 1 4 4 C 1.53037 * 109.51515 * 185.85043 * 3 2 1 5 5 C 1.53113 * 109.27741 * 300.81664 * 4 3 2 6 6 C 1.53123 * 109.16302 * 57.65401 * 5 4 3 7 7 C 1.52999 * 109.50464 * 182.40489 * 6 5 4 8 8 C 1.53000 * 109.53642 * 62.30845 * 6 5 4 9 9 C 1.46840 * 111.00253 * 124.20426 * 2 1 3 10 10 H 1.09005 * 109.46327 * 294.16204 * 9 2 1 11 11 C 1.52997 * 109.46374 * 54.14298 * 9 2 1 12 12 N 1.46498 * 109.47006 * 188.68007 * 11 9 2 13 13 C 1.34782 * 120.00016 * 186.45795 * 12 11 9 14 14 O 1.21353 * 119.99941 * 0.02562 * 13 12 11 15 15 C 1.49454 * 120.00284 * 180.02562 * 13 12 11 16 16 O 1.21345 * 119.99520 * 0.02562 * 15 13 12 17 17 N 1.34771 * 119.99880 * 180.02562 * 15 13 12 18 18 C 1.46502 * 119.99916 * 180.02562 * 17 15 13 19 19 C 1.52999 * 109.47358 * 180.02562 * 18 17 15 20 20 C 1.53002 * 109.47221 * 179.97438 * 19 18 17 21 21 C 1.50701 * 109.46933 * 180.02562 * 20 19 18 22 22 H 1.07993 * 120.00092 * 359.97438 * 21 20 19 23 23 C 1.37875 * 119.99576 * 180.02562 * 21 20 19 24 24 N 1.31519 * 120.00226 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99875 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46932 * 59.99643 * 25 23 21 27 27 H 1.48494 * 109.47185 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47055 * 299.99866 * 25 23 21 29 29 H 1.08997 * 109.47267 * 289.82108 * 1 2 3 30 30 H 1.09000 * 109.47344 * 49.82837 * 1 2 3 31 31 H 1.09002 * 109.47085 * 169.82214 * 1 2 3 32 32 H 1.08995 * 109.46915 * 65.83634 * 3 2 1 33 33 H 1.08997 * 109.45993 * 305.86066 * 3 2 1 34 34 H 1.08991 * 109.50683 * 180.87300 * 4 3 2 35 35 H 1.09001 * 109.50165 * 60.75142 * 4 3 2 36 36 H 1.08999 * 109.52428 * 297.74803 * 5 4 3 37 37 H 1.08999 * 109.52637 * 177.55479 * 5 4 3 38 38 H 1.09004 * 109.47243 * 189.38591 * 7 6 5 39 39 H 1.09004 * 109.47191 * 309.39050 * 7 6 5 40 40 H 1.09002 * 109.47518 * 69.38792 * 7 6 5 41 41 H 1.09006 * 109.46759 * 300.17347 * 8 6 5 42 42 H 1.08998 * 109.47397 * 60.17638 * 8 6 5 43 43 H 1.09003 * 109.47187 * 180.18055 * 8 6 5 44 44 H 1.09004 * 109.46750 * 68.68612 * 11 9 2 45 45 H 1.08993 * 109.47588 * 308.68304 * 11 9 2 46 46 H 0.96995 * 120.00235 * 6.73831 * 12 11 9 47 47 H 0.96998 * 120.00616 * 0.02562 * 17 15 13 48 48 H 1.09004 * 109.46841 * 300.00024 * 18 17 15 49 49 H 1.09001 * 109.47534 * 59.99569 * 18 17 15 50 50 H 1.09001 * 109.46647 * 299.99904 * 19 18 17 51 51 H 1.08996 * 109.47208 * 59.99783 * 19 18 17 52 52 H 1.08999 * 109.46665 * 299.99805 * 20 19 18 53 53 H 1.08998 * 109.46766 * 59.99418 * 20 19 18 54 54 H 0.97003 * 119.99835 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9950 1.3711 0.0000 4 6 3.5178 1.3344 -0.1470 5 6 4.1187 0.5373 1.0139 6 6 3.5181 -0.8712 1.0206 7 6 4.0683 -1.6555 2.2135 8 6 3.8874 -1.5910 -0.2780 9 6 1.9953 -0.7706 1.1337 10 1 1.7327 -0.2705 2.0660 11 6 1.3891 -2.1753 1.1206 12 7 1.7481 -2.8737 2.3574 13 6 1.4340 -4.1752 2.5119 14 8 0.8541 -4.7687 1.6264 15 6 1.7997 -4.8875 3.7739 16 8 2.3791 -4.2939 4.6595 17 7 1.4859 -6.1891 3.9281 18 6 1.8439 -6.8872 5.1654 19 6 1.3779 -8.3422 5.0832 20 6 1.7524 -9.0714 6.3751 21 6 1.2938 -10.5047 6.2938 22 1 0.7858 -10.8598 5.4095 23 6 1.5221 -11.3623 7.3490 24 7 2.1403 -10.9297 8.4262 25 14 0.9531 -13.1387 7.2487 26 1 1.6111 -13.8049 6.0961 27 1 1.3166 -13.8465 8.5025 28 1 -0.5203 -13.1771 7.0674 29 1 -0.3633 0.3485 0.9667 30 1 -0.3634 0.6629 -0.7852 31 1 -0.3633 -1.0115 -0.1816 32 1 1.7324 1.8609 0.9376 33 1 1.5629 1.9258 -0.8329 34 1 3.9096 2.3514 -0.1314 35 1 3.7809 0.8569 -1.0909 36 1 3.8888 1.0357 1.9556 37 1 5.1996 0.4717 0.8899 38 1 3.7750 -2.7018 2.1269 39 1 5.1558 -1.5828 2.2258 40 1 3.6660 -1.2408 3.1378 41 1 3.4963 -1.0311 -1.1276 42 1 4.9721 -1.6624 -0.3581 43 1 3.4567 -2.5924 -0.2736 44 1 1.7753 -2.7296 0.2652 45 1 0.3042 -2.1023 1.0464 46 1 2.2083 -2.3984 3.0667 47 1 1.0231 -6.6637 3.2201 48 1 2.9255 -6.8595 5.2982 49 1 1.3613 -6.3979 6.0114 50 1 0.2964 -8.3702 4.9501 51 1 1.8609 -8.8312 4.2373 52 1 2.8339 -9.0433 6.5077 53 1 1.2697 -8.5824 7.2212 54 1 2.3012 -11.5332 9.1684 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343298342.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:40 Heat of formation + Delta-G solvation = -97.604353 kcal Electronic energy + Delta-G solvation = -30171.379642 eV Core-core repulsion = 26141.903603 eV Total energy + Delta-G solvation = -4029.476039 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.03684 -41.05579 -39.55124 -37.25028 -36.44600 -35.81419 -35.17921 -33.09917 -32.97003 -29.68564 -28.88609 -28.25551 -27.53185 -26.92832 -25.55742 -23.92869 -22.50393 -22.37603 -22.35060 -21.35687 -19.82676 -19.05273 -18.49953 -18.02045 -17.44147 -16.91176 -16.73162 -16.56903 -16.47802 -16.17655 -15.93277 -15.82646 -15.25612 -15.13147 -14.80181 -14.57967 -14.26938 -14.23983 -14.00821 -13.78415 -13.54883 -13.46564 -13.32403 -13.15165 -12.97568 -12.84445 -12.76269 -12.72891 -12.54619 -12.43572 -12.35774 -12.16535 -11.89364 -11.69547 -11.55695 -11.38160 -11.25183 -11.16476 -11.09107 -10.72854 -10.53901 -10.32174 -10.14787 -9.30583 -8.19031 -6.29995 0.28624 1.23328 1.42328 1.44824 1.52736 2.08409 2.41335 2.51344 2.99003 3.14714 3.39398 3.49076 3.60896 3.84830 4.06313 4.08138 4.12297 4.18153 4.20479 4.32759 4.38601 4.51264 4.52515 4.56674 4.59426 4.62126 4.72483 4.78936 4.86157 4.87218 4.91574 4.92134 4.96976 5.02006 5.05703 5.09533 5.14918 5.15977 5.19112 5.22529 5.30287 5.35059 5.39875 5.51599 5.61792 5.70923 5.84276 5.84593 6.04311 6.10173 6.22882 6.29494 6.66540 6.86595 6.88420 7.39249 8.92523 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.029880 B = 0.001701 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.841651 B =16461.455459 C =16857.531131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.536 5.536 3 C 0.056 3.944 4 C -0.117 4.117 5 C -0.109 4.109 6 C -0.055 4.055 7 C -0.159 4.159 8 C -0.133 4.133 9 C 0.091 3.909 10 H 0.049 0.951 11 C 0.117 3.883 12 N -0.685 5.685 13 C 0.512 3.488 14 O -0.539 6.539 15 C 0.501 3.499 16 O -0.546 6.546 17 N -0.686 5.686 18 C 0.127 3.873 19 C -0.106 4.106 20 C 0.025 3.975 21 C -0.544 4.544 22 H 0.064 0.936 23 C -0.001 4.001 24 N -0.932 5.932 25 Si 0.965 3.035 26 H -0.267 1.267 27 H -0.285 1.285 28 H -0.267 1.267 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.070 0.930 32 H 0.033 0.967 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.055 0.945 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.071 0.929 42 H 0.053 0.947 43 H 0.042 0.958 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.419 0.581 47 H 0.419 0.581 48 H 0.065 0.935 49 H 0.065 0.935 50 H 0.067 0.933 51 H 0.067 0.933 52 H -0.003 1.003 53 H -0.004 1.004 54 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.809 29.122 -20.328 35.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.261 5.261 3 C -0.071 4.071 4 C -0.154 4.154 5 C -0.147 4.147 6 C -0.055 4.055 7 C -0.217 4.217 8 C -0.190 4.190 9 C -0.018 4.018 10 H 0.067 0.933 11 C -0.006 4.006 12 N -0.342 5.342 13 C 0.292 3.708 14 O -0.416 6.416 15 C 0.282 3.718 16 O -0.424 6.424 17 N -0.338 5.338 18 C 0.004 3.996 19 C -0.144 4.144 20 C -0.013 4.013 21 C -0.582 4.582 22 H 0.082 0.918 23 C -0.199 4.199 24 N -0.572 5.572 25 Si 0.790 3.210 26 H -0.192 1.192 27 H -0.210 1.210 28 H -0.192 1.192 29 H 0.046 0.954 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.051 0.949 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.072 0.928 43 H 0.061 0.939 44 H 0.101 0.899 45 H 0.094 0.906 46 H 0.260 0.740 47 H 0.256 0.744 48 H 0.083 0.917 49 H 0.083 0.917 50 H 0.085 0.915 51 H 0.085 0.915 52 H 0.015 0.985 53 H 0.015 0.985 54 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.018 28.868 -20.599 35.479 hybrid contribution -0.451 -0.728 1.308 1.563 sum 0.567 28.140 -19.291 34.122 Atomic orbital electron populations 1.22527 0.86630 1.03033 1.01025 1.61830 1.08113 1.14306 1.41865 1.22178 0.96024 0.87894 1.01035 1.21636 0.93988 1.00699 0.99126 1.21657 1.00385 0.93762 0.98882 1.20576 0.92556 0.96313 0.96098 1.22251 1.01966 1.00195 0.97247 1.21830 1.00671 0.99434 0.97025 1.21729 0.95035 0.92092 0.92908 0.93325 1.21726 1.00406 0.92509 0.85943 1.46163 1.57938 1.09488 1.20624 1.19948 0.80214 0.83611 0.87049 1.90763 1.41075 1.67003 1.42748 1.20302 0.80361 0.83324 0.87840 1.90747 1.41592 1.66787 1.43296 1.45876 1.57586 1.09859 1.20481 1.21483 1.00385 0.92548 0.85152 1.21643 1.01188 0.92008 0.99568 1.18932 0.95363 0.94352 0.92641 1.21651 1.37731 0.96581 1.02187 0.91780 1.25980 0.95274 1.03634 0.95035 1.70094 1.43015 1.37469 1.06670 0.85499 0.79051 0.78972 0.77504 1.19188 1.21050 1.19181 0.95386 0.89896 0.91152 0.94862 0.89438 0.90204 0.90974 0.92044 0.91053 0.92606 0.91544 0.92206 0.90994 0.92815 0.93938 0.89896 0.90607 0.73986 0.74351 0.91679 0.91694 0.91470 0.91464 0.98509 0.98517 0.92801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 8.91 127.69 1.14 1.30 16 2 N -0.54 -6.16 4.03 -897.19 -3.62 -9.78 16 3 C 0.06 0.50 5.46 86.32 0.47 0.97 16 4 C -0.12 -0.97 5.74 30.64 0.18 -0.80 16 5 C -0.11 -1.09 4.78 30.67 0.15 -0.94 16 6 C -0.06 -0.69 0.54 -52.13 -0.03 -0.72 16 7 C -0.16 -2.29 6.87 71.98 0.49 -1.80 16 8 C -0.13 -1.82 7.67 71.98 0.55 -1.27 16 9 C 0.09 1.19 1.31 44.94 0.06 1.25 16 10 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 11 C 0.12 1.94 4.65 86.38 0.40 2.34 16 12 N -0.69 -13.43 3.51 -464.41 -1.63 -15.06 16 13 C 0.51 13.03 7.89 87.27 0.69 13.72 16 14 O -0.54 -15.66 16.46 -3.26 -0.05 -15.71 16 15 C 0.50 14.60 7.89 87.27 0.69 15.29 16 16 O -0.55 -18.03 16.48 -3.23 -0.05 -18.08 16 17 N -0.69 -20.04 5.55 -464.41 -2.58 -22.62 16 18 C 0.13 4.34 5.67 86.38 0.49 4.83 16 19 C -0.11 -4.08 5.27 30.59 0.16 -3.92 16 20 C 0.02 1.27 4.97 29.85 0.15 1.42 16 21 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 22 H 0.06 3.38 7.74 -2.91 -0.02 3.36 16 23 C 0.00 -0.08 5.46 84.65 0.46 0.39 16 24 N -0.93 -56.45 13.29 21.45 0.28 -56.16 16 25 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 27 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 H 0.03 0.29 8.12 -2.39 -0.02 0.27 16 30 H 0.08 0.64 7.98 -2.39 -0.02 0.62 16 31 H 0.07 0.79 6.39 -2.39 -0.02 0.78 16 32 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.09 0.62 8.01 -2.39 -0.02 0.61 16 34 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.07 0.68 6.58 -2.39 -0.02 0.66 16 36 H 0.06 0.61 8.14 -2.39 -0.02 0.60 16 37 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.06 0.99 5.94 -2.38 -0.01 0.98 16 39 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 40 H 0.06 0.81 7.27 -2.39 -0.02 0.80 16 41 H 0.07 0.98 6.01 -2.38 -0.01 0.96 16 42 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.04 0.70 6.23 -2.39 -0.01 0.68 16 44 H 0.08 1.56 5.96 -2.39 -0.01 1.55 16 45 H 0.08 1.26 5.97 -2.39 -0.01 1.25 16 46 H 0.42 7.65 5.26 -92.71 -0.49 7.16 16 47 H 0.42 11.03 7.94 -92.71 -0.74 10.30 16 48 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 49 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 50 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 51 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 52 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 53 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 54 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -66.31 411.91 0.34 -65.98 By element: Atomic # 1 Polarization: 23.88 SS G_CDS: -0.33 Total: 23.55 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 6.28 Total: 1.98 kcal Atomic # 7 Polarization: -96.09 SS G_CDS: -7.54 Total: -103.63 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.11 Total: -33.79 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -66.31 0.34 -65.98 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343298342.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.629 kcal (2) G-P(sol) polarization free energy of solvation -66.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds