Wall clock time and date at job start Sat Apr 11 2020 05:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99651 * 2 1 4 4 H 1.48498 * 109.47327 * 269.99596 * 3 2 1 5 5 H 1.48497 * 109.47817 * 29.99837 * 3 2 1 6 6 H 1.48506 * 109.47176 * 149.99814 * 3 2 1 7 7 C 1.37874 * 119.99891 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99517 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00250 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47412 * 179.97438 * 9 7 2 11 11 N 1.46495 * 109.47231 * 179.97438 * 10 9 7 12 12 C 1.34784 * 119.99802 * 179.97438 * 11 10 9 13 13 O 1.21586 * 119.99909 * 355.02087 * 12 11 10 14 14 N 1.34774 * 119.99579 * 175.01574 * 12 11 10 15 15 C 1.46930 * 120.62594 * 184.94940 * 14 12 11 16 16 C 1.52767 * 109.00782 * 233.58299 * 15 14 12 17 17 C 1.53031 * 109.38633 * 305.59240 * 16 15 14 18 18 C 1.52996 * 109.46452 * 181.25961 * 17 16 15 19 19 C 1.53005 * 109.46984 * 64.92953 * 18 17 16 20 20 N 1.46897 * 109.46891 * 180.02562 * 19 18 17 21 21 C 1.47010 * 111.00200 * 293.63431 * 20 19 18 22 22 C 1.53105 * 109.25728 * 177.60936 * 21 20 19 23 23 O 1.43012 * 109.25639 * 56.84837 * 22 21 20 24 24 C 1.43010 * 113.74113 * 301.32755 * 23 22 21 25 25 C 1.47012 * 110.99918 * 169.99835 * 20 19 18 26 26 C 1.53042 * 109.54183 * 61.23785 * 17 16 15 27 27 C 1.46924 * 120.63429 * 5.23244 * 14 12 11 28 28 H 0.97003 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.09006 * 109.47413 * 59.99512 * 9 7 2 30 30 H 1.09003 * 109.47486 * 299.99689 * 9 7 2 31 31 H 1.09001 * 109.47084 * 299.99996 * 10 9 7 32 32 H 1.09000 * 109.46749 * 59.99803 * 10 9 7 33 33 H 0.97001 * 120.00457 * 0.02562 * 11 10 9 34 34 H 1.08993 * 109.58889 * 353.42310 * 15 14 12 35 35 H 1.09001 * 109.58692 * 113.85050 * 15 14 12 36 36 H 1.08993 * 109.56435 * 185.55251 * 16 15 14 37 37 H 1.09005 * 109.38001 * 65.52056 * 16 15 14 38 38 H 1.09004 * 109.45890 * 301.21659 * 17 16 15 39 39 H 1.08993 * 109.47591 * 184.92833 * 18 17 16 40 40 H 1.09000 * 109.46918 * 304.93135 * 18 17 16 41 41 H 1.09003 * 109.46961 * 300.00319 * 19 18 17 42 42 H 1.09000 * 109.47145 * 60.00321 * 19 18 17 43 43 H 1.08997 * 109.50773 * 297.54164 * 21 20 19 44 44 H 1.08998 * 109.50584 * 57.67672 * 21 20 19 45 45 H 1.08999 * 109.50642 * 296.91376 * 22 21 20 46 46 H 1.08998 * 109.54095 * 176.80542 * 22 21 20 47 47 H 1.09003 * 109.50477 * 298.73842 * 24 23 22 48 48 H 1.09007 * 109.54392 * 178.62772 * 24 23 22 49 49 H 1.09000 * 109.50921 * 302.32761 * 25 20 19 50 50 H 1.09002 * 109.50832 * 62.41034 * 25 20 19 51 51 H 1.08998 * 109.50077 * 178.68409 * 26 17 16 52 52 H 1.08997 * 109.49323 * 58.58243 * 26 17 16 53 53 H 1.08998 * 109.58805 * 246.15013 * 27 14 12 54 54 H 1.09000 * 109.58747 * 6.43515 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6528 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 7 1.5128 -4.9307 0.0012 12 6 2.1868 -6.0980 0.0007 13 8 3.3991 -6.0999 -0.0915 14 7 1.5167 -7.2629 0.1027 15 6 2.2416 -8.5362 0.2126 16 6 1.7400 -9.4894 -0.8707 17 6 0.2189 -9.6207 -0.7671 18 6 -0.2820 -10.5993 -1.8312 19 6 0.2675 -11.9968 -1.5379 20 7 -0.2130 -12.9363 -2.5599 21 6 -1.6694 -13.1142 -2.4690 22 6 -2.1344 -14.0516 -3.5867 23 8 -1.4300 -15.2921 -3.4853 24 6 -0.0089 -15.1560 -3.5705 25 6 0.4775 -14.2297 -2.4528 26 6 -0.4294 -8.2520 -0.9877 27 6 0.0476 -7.2843 0.0999 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8719 -3.6043 -0.8895 32 1 2.8719 -3.6042 0.8905 33 1 0.5428 -4.9308 0.0011 34 1 3.3091 -8.3617 0.0781 35 1 2.0618 -8.9756 1.1937 36 1 2.1997 -10.4685 -0.7368 37 1 2.0051 -9.0941 -1.8514 38 1 -0.0469 -9.9932 0.2223 39 1 -1.3715 -10.6267 -1.8156 40 1 0.0593 -10.2735 -2.8138 41 1 1.3570 -11.9694 -1.5534 42 1 -0.0738 -12.3226 -0.5553 43 1 -1.9236 -13.5472 -1.5016 44 1 -2.1616 -12.1476 -2.5765 45 1 -1.9286 -13.5943 -4.5545 46 1 -3.2049 -14.2319 -3.4895 47 1 0.2586 -14.7307 -4.5379 48 1 0.4584 -16.1347 -3.4614 49 1 1.5526 -14.0774 -2.5484 50 1 0.2584 -14.6802 -1.4847 51 1 -1.5137 -8.3506 -0.9370 52 1 -0.1438 -7.8680 -1.9670 53 1 -0.3148 -7.6196 1.0717 54 1 -0.3320 -6.2836 -0.1063 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345811584.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:47:51 Heat of formation + Delta-G solvation = -105.675972 kcal Electronic energy + Delta-G solvation = -29545.982682 eV Core-core repulsion = 25516.156631 eV Total energy + Delta-G solvation = -4029.826051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.47225 -40.55417 -39.08942 -37.09277 -36.61106 -35.08213 -34.62925 -32.28947 -32.13131 -31.51817 -30.52205 -27.95790 -26.69179 -25.19813 -25.04429 -24.18814 -22.97152 -22.64870 -21.44225 -21.23260 -20.53216 -19.13874 -18.48819 -17.52129 -17.19150 -17.14958 -16.80456 -16.49916 -16.29464 -16.01113 -15.77197 -15.61639 -15.38961 -15.36443 -15.20785 -15.00483 -14.55103 -14.38945 -14.27733 -14.05802 -13.73786 -13.38258 -13.19648 -13.00781 -12.94342 -12.93178 -12.52267 -12.38933 -12.29499 -12.25352 -12.19215 -11.91095 -11.80859 -11.65902 -11.51900 -11.46884 -11.34738 -11.17695 -10.98528 -10.64192 -10.60237 -10.16808 -9.44474 -9.37767 -8.23830 -6.34149 1.42224 1.42825 1.54132 1.69976 2.12700 2.41187 2.74353 2.97125 3.01876 3.10903 3.68930 3.81522 3.85797 3.94185 4.02684 4.07595 4.14844 4.20395 4.26842 4.33831 4.35174 4.44582 4.46635 4.50410 4.52126 4.60345 4.63246 4.67038 4.73036 4.80742 4.83355 4.84676 4.84827 4.88207 4.92573 5.00180 5.04295 5.08504 5.14916 5.22741 5.29697 5.32245 5.50445 5.55871 5.58209 5.63820 5.79122 5.96059 5.98152 6.02114 6.17160 6.18052 6.78418 6.99224 7.35070 7.56280 8.88050 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.028017 B = 0.001579 C = 0.001530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.162414 B =17726.873135 C =18297.612204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C 0.008 3.992 3 Si 0.966 3.034 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.025 3.975 10 C 0.160 3.840 11 N -0.736 5.736 12 C 0.697 3.303 13 O -0.641 6.641 14 N -0.626 5.626 15 C 0.125 3.875 16 C -0.121 4.121 17 C -0.076 4.076 18 C -0.100 4.100 19 C 0.057 3.943 20 N -0.549 5.549 21 C 0.016 3.984 22 C 0.059 3.941 23 O -0.408 6.408 24 C 0.060 3.940 25 C 0.018 3.982 26 C -0.123 4.123 27 C 0.104 3.896 28 H 0.266 0.734 29 H 0.008 0.992 30 H 0.009 0.991 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.404 0.596 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.049 0.951 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.080 0.920 42 H 0.038 0.962 43 H 0.037 0.963 44 H 0.098 0.902 45 H 0.058 0.942 46 H 0.111 0.889 47 H 0.058 0.942 48 H 0.112 0.888 49 H 0.096 0.904 50 H 0.038 0.962 51 H 0.098 0.902 52 H 0.053 0.947 53 H 0.089 0.911 54 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 -32.159 -3.682 32.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.586 4.586 8 H 0.076 0.924 9 C -0.013 4.013 10 C 0.035 3.965 11 N -0.392 5.392 12 C 0.399 3.601 13 O -0.524 6.524 14 N -0.364 5.364 15 C 0.002 3.998 16 C -0.159 4.159 17 C -0.095 4.095 18 C -0.138 4.138 19 C -0.070 4.070 20 N -0.275 5.275 21 C -0.112 4.112 22 C -0.017 4.017 23 O -0.327 6.327 24 C -0.016 4.016 25 C -0.110 4.110 26 C -0.161 4.161 27 C -0.018 4.018 28 H 0.075 0.925 29 H 0.026 0.974 30 H 0.028 0.972 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.242 0.758 34 H 0.085 0.915 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.068 0.932 38 H 0.104 0.896 39 H 0.090 0.910 40 H 0.078 0.922 41 H 0.098 0.902 42 H 0.056 0.944 43 H 0.056 0.944 44 H 0.116 0.884 45 H 0.076 0.924 46 H 0.129 0.871 47 H 0.077 0.923 48 H 0.130 0.870 49 H 0.114 0.886 50 H 0.056 0.944 51 H 0.116 0.884 52 H 0.072 0.928 53 H 0.107 0.893 54 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -5.486 -32.022 -4.160 32.754 hybrid contribution -0.025 1.131 0.690 1.325 sum -5.511 -30.891 -3.471 31.570 Atomic orbital electron populations 1.70057 1.07490 1.27988 1.50934 1.25858 0.95814 1.03029 0.94353 0.85436 0.78618 0.78426 0.78507 1.19799 1.20409 1.19127 1.21452 0.93591 0.91890 1.51653 0.92358 1.19119 0.94190 0.91633 0.96315 1.21076 0.94679 0.81245 0.99464 1.45422 1.10338 1.04532 1.78952 1.16135 0.84893 0.81403 0.77708 1.90831 1.14131 1.87009 1.60382 1.47363 1.07386 1.04603 1.77019 1.21493 0.96626 0.81797 0.99876 1.21904 0.96550 0.99405 0.98055 1.21056 0.93967 0.94421 1.00098 1.21511 1.00801 0.92834 0.98652 1.22201 1.00620 0.91970 0.92251 1.62237 1.04801 1.10653 1.49767 1.22847 0.88812 1.01189 0.98311 1.22800 0.97278 0.83848 0.97807 1.87955 1.19332 1.31102 1.94359 1.22788 0.80588 1.00484 0.97775 1.22801 1.00221 0.89606 0.98406 1.21935 1.01645 0.94629 0.97939 1.21882 0.78067 1.00893 1.00946 0.92531 0.97398 0.97222 0.94067 0.93884 0.75819 0.91512 0.90011 0.88831 0.93180 0.89602 0.91019 0.92198 0.90157 0.94380 0.94443 0.88366 0.92360 0.87112 0.92341 0.87035 0.88613 0.94384 0.88407 0.92783 0.89304 0.90636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.25 13.29 21.45 0.28 -53.96 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.97 43.85 29.54 68.60 2.03 45.88 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -31.00 9.11 25.60 0.23 -30.77 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.02 1.28 5.09 29.85 0.15 1.44 16 10 C 0.16 7.22 5.62 86.38 0.49 7.70 16 11 N -0.74 -27.50 5.47 -478.54 -2.62 -30.12 16 12 C 0.70 25.80 8.30 179.05 1.49 27.28 16 13 O -0.64 -29.11 15.77 -3.99 -0.06 -29.17 16 14 N -0.63 -16.51 2.98 -837.72 -2.50 -19.00 16 15 C 0.12 2.69 6.41 86.22 0.55 3.25 16 16 C -0.12 -1.89 5.13 30.53 0.16 -1.73 16 17 C -0.08 -0.91 2.15 -10.77 -0.02 -0.94 16 18 C -0.10 -1.09 4.62 30.59 0.14 -0.95 16 19 C 0.06 0.61 4.71 86.31 0.41 1.02 16 20 N -0.55 -6.81 4.73 -895.21 -4.23 -11.04 16 21 C 0.02 0.18 5.44 86.32 0.47 0.65 16 22 C 0.06 0.69 7.01 72.02 0.50 1.19 16 23 O -0.41 -6.37 10.83 -148.98 -1.61 -7.98 16 24 C 0.06 0.69 7.01 72.01 0.50 1.19 16 25 C 0.02 0.20 5.64 86.31 0.49 0.68 16 26 C -0.12 -1.76 5.36 30.68 0.16 -1.60 16 27 C 0.10 1.95 6.39 86.37 0.55 2.50 16 28 H 0.27 14.62 8.31 -92.71 -0.77 13.85 16 29 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 30 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.40 13.01 5.96 -92.71 -0.55 12.46 16 34 H 0.07 1.82 6.99 -2.39 -0.02 1.80 16 35 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.09 1.09 6.50 -2.39 -0.02 1.08 16 37 H 0.05 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 39 H 0.07 0.69 6.52 -2.39 -0.02 0.67 16 40 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.08 0.85 6.43 -2.39 -0.02 0.83 16 42 H 0.04 0.40 8.12 -2.39 -0.02 0.38 16 43 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 44 H 0.10 0.90 6.38 -2.39 -0.02 0.89 16 45 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 46 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 48 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 49 H 0.10 0.86 8.09 -2.39 -0.02 0.84 16 50 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 51 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 53 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 54 H 0.08 1.50 5.64 -2.39 -0.01 1.49 16 Total: -1.00 -72.28 412.45 -1.66 -73.94 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.31 Total: 19.60 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 6.73 Total: 11.85 kcal Atomic # 7 Polarization: -105.07 SS G_CDS: -9.06 Total: -114.12 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -1.68 Total: -37.15 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -72.28 -1.66 -73.94 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345811584.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.736 kcal (2) G-P(sol) polarization free energy of solvation -72.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds