Wall clock time and date at job start Sat Apr 11 2020 05:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.47266 * 2 1 4 4 C 1.53008 * 109.47028 * 240.00357 * 2 1 3 5 5 N 1.46495 * 109.46972 * 184.61635 * 4 2 1 6 6 C 1.34778 * 119.99874 * 174.89431 * 5 4 2 7 7 O 1.21355 * 119.99871 * 0.02562 * 6 5 4 8 8 C 1.49446 * 120.00233 * 179.97438 * 6 5 4 9 9 O 1.21355 * 119.99895 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00233 * 179.97438 * 8 6 5 11 11 C 1.46500 * 119.99928 * 179.97438 * 10 8 6 12 12 C 1.53004 * 109.46900 * 180.02562 * 11 10 8 13 13 C 1.53007 * 109.46698 * 180.02562 * 12 11 10 14 14 C 1.50699 * 109.46514 * 180.02562 * 13 12 11 15 15 H 1.08004 * 120.00537 * 359.97438 * 14 13 12 16 16 C 1.37879 * 119.99992 * 179.97438 * 14 13 12 17 17 N 1.31518 * 119.99683 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00394 * 179.97438 * 16 14 13 19 19 H 1.48495 * 109.47123 * 60.00230 * 18 16 14 20 20 H 1.48496 * 109.47212 * 180.02562 * 18 16 14 21 21 H 1.48504 * 109.47022 * 300.00114 * 18 16 14 22 22 N 1.46895 * 109.47398 * 120.00239 * 2 1 3 23 23 C 1.46841 * 111.00069 * 295.49468 * 22 2 1 24 24 C 1.53035 * 109.52652 * 185.83752 * 23 22 2 25 25 C 1.53117 * 109.27808 * 300.81760 * 24 23 22 26 26 C 1.53003 * 109.52527 * 177.55517 * 25 24 23 27 27 C 1.53122 * 109.15872 * 57.65383 * 25 24 23 28 28 C 1.46850 * 110.99880 * 59.70225 * 22 2 1 29 29 H 1.08997 * 109.46884 * 299.99893 * 1 2 3 30 30 H 1.09008 * 109.47149 * 59.99825 * 1 2 3 31 31 H 1.09004 * 109.47093 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46947 * 304.61576 * 4 2 1 33 33 H 1.09000 * 109.47419 * 64.61563 * 4 2 1 34 34 H 0.97001 * 120.00418 * 354.89793 * 5 4 2 35 35 H 0.97001 * 119.99707 * 0.02562 * 10 8 6 36 36 H 1.08997 * 109.47655 * 300.00430 * 11 10 8 37 37 H 1.09007 * 109.46720 * 60.00785 * 11 10 8 38 38 H 1.08997 * 109.47289 * 300.00037 * 12 11 10 39 39 H 1.08993 * 109.46997 * 60.00622 * 12 11 10 40 40 H 1.08997 * 109.46998 * 299.99868 * 13 12 11 41 41 H 1.08993 * 109.47172 * 60.00382 * 13 12 11 42 42 H 0.97003 * 120.00253 * 180.02562 * 17 16 14 43 43 H 1.09008 * 109.46235 * 305.85582 * 23 22 2 44 44 H 1.09001 * 109.46716 * 65.81864 * 23 22 2 45 45 H 1.09004 * 109.50608 * 180.87523 * 24 23 22 46 46 H 1.09000 * 109.50169 * 60.76206 * 24 23 22 47 47 H 1.08989 * 109.52759 * 297.75105 * 25 24 23 48 48 H 1.08997 * 109.47093 * 300.32543 * 26 25 24 49 49 H 1.09007 * 109.46839 * 60.31683 * 26 25 24 50 50 H 1.08992 * 109.47385 * 180.31923 * 26 25 24 51 51 H 1.09000 * 109.50397 * 182.40464 * 27 25 24 52 52 H 1.09003 * 109.50452 * 62.28812 * 27 25 24 53 53 H 1.09003 * 109.46075 * 294.17626 * 28 22 2 54 54 H 1.09001 * 109.46334 * 54.14562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5007 -0.8182 -1.1951 6 6 4.1660 -1.5079 -2.1428 7 8 3.5549 -2.0482 -3.0414 8 6 5.6562 -1.6065 -2.0878 9 8 6.2673 -1.0658 -1.1895 10 7 6.3214 -2.2966 -3.0353 11 6 7.7822 -2.3927 -2.9817 12 6 8.2824 -3.2239 -4.1649 13 6 9.8081 -3.3248 -4.1084 14 6 10.3008 -4.1429 -5.2741 15 1 9.5962 -4.5506 -5.9840 16 6 11.6511 -4.3711 -5.4345 17 7 12.5090 -3.8752 -4.5699 18 14 12.2618 -5.3859 -6.8790 19 1 11.8549 -4.7335 -8.1494 20 1 13.7425 -5.4837 -6.8244 21 1 11.6734 -6.7477 -6.8112 22 7 2.0197 -0.6925 1.1993 23 6 1.6389 0.0326 2.4181 24 6 2.2863 -0.6346 3.6337 25 6 1.8218 -2.0912 3.7179 26 6 2.5130 -2.7810 4.8959 27 6 2.1876 -2.8113 2.4171 28 6 1.5431 -2.0810 1.2368 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6107 -1.7222 -1.2917 33 1 1.7458 -0.1618 -2.1374 34 1 3.9892 -0.3861 -0.4770 35 1 5.8328 -2.7290 -3.7532 36 1 8.2142 -1.3932 -3.0318 37 1 8.0808 -2.8713 -2.0489 38 1 7.8505 -4.2234 -4.1151 39 1 7.9839 -2.7450 -5.0973 40 1 10.2403 -2.3254 -4.1579 41 1 10.1063 -3.8039 -3.1760 42 1 13.4590 -4.0353 -4.6828 43 1 1.9786 1.0660 2.3471 44 1 0.5546 0.0139 2.5281 45 1 1.9908 -0.1054 4.5397 46 1 3.3710 -0.6038 3.5310 47 1 0.7416 -2.1215 3.8597 48 1 3.5931 -2.7472 4.7538 49 1 2.2521 -2.2676 5.8215 50 1 2.1861 -3.8192 4.9517 51 1 1.8217 -3.8374 2.4538 52 1 3.2708 -2.8149 2.2952 53 1 0.4592 -2.0899 1.3523 54 1 1.8133 -2.5829 0.3077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356450253.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:27 Heat of formation + Delta-G solvation = -118.807790 kcal Electronic energy + Delta-G solvation = -29614.846741 eV Core-core repulsion = 25584.451252 eV Total energy + Delta-G solvation = -4030.395489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.73190 -40.64266 -39.52940 -37.35582 -37.01099 -35.38428 -34.83953 -33.02512 -31.99439 -31.73868 -29.11479 -28.13275 -27.91954 -25.70438 -24.29874 -23.98367 -23.32856 -22.35703 -21.57743 -21.11742 -20.20801 -19.36819 -18.50245 -17.90493 -17.53585 -17.03585 -16.73678 -16.51360 -16.26635 -16.05367 -15.73637 -15.58571 -15.36964 -15.18323 -14.95268 -14.74284 -14.26025 -14.19953 -13.85346 -13.77928 -13.72779 -13.50190 -13.33398 -13.17237 -12.88707 -12.74320 -12.72298 -12.60800 -12.53552 -12.42963 -12.42034 -12.19280 -11.68976 -11.68167 -11.55920 -11.54570 -11.24474 -11.13487 -11.08148 -10.67764 -10.53689 -10.31072 -10.20634 -9.21348 -8.18672 -6.29708 0.35602 1.33924 1.42507 1.45153 1.53058 2.15284 2.42299 2.64363 2.93158 3.14917 3.48267 3.63215 3.85247 3.87455 3.92093 4.09441 4.10324 4.18849 4.28019 4.35768 4.40073 4.44223 4.53197 4.56871 4.60892 4.67588 4.73521 4.79685 4.82215 4.85261 4.88364 4.92209 4.94382 5.03223 5.03989 5.15422 5.16835 5.17599 5.24694 5.26841 5.29200 5.30679 5.34718 5.51918 5.56944 5.71282 5.84903 5.94654 6.14331 6.17698 6.23693 6.38778 6.75693 6.86941 6.96259 7.39420 8.92993 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.017104 B = 0.001769 C = 0.001670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.661686 B =15821.298535 C =16761.506484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.073 3.927 3 H 0.102 0.898 4 C 0.123 3.877 5 N -0.673 5.673 6 C 0.512 3.488 7 O -0.546 6.546 8 C 0.500 3.500 9 O -0.548 6.548 10 N -0.688 5.688 11 C 0.128 3.872 12 C -0.106 4.106 13 C 0.025 3.975 14 C -0.543 4.543 15 H 0.064 0.936 16 C -0.003 4.003 17 N -0.933 5.933 18 Si 0.966 3.034 19 H -0.267 1.267 20 H -0.285 1.285 21 H -0.267 1.267 22 N -0.542 5.542 23 C 0.057 3.943 24 C -0.111 4.111 25 C -0.090 4.090 26 C -0.146 4.146 27 C -0.112 4.112 28 C 0.054 3.946 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.083 0.917 34 H 0.421 0.579 35 H 0.419 0.581 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.067 0.933 40 H -0.004 1.004 41 H -0.004 1.004 42 H 0.263 0.737 43 H 0.081 0.919 44 H 0.044 0.956 45 H 0.077 0.923 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.046 0.954 49 H 0.061 0.939 50 H 0.054 0.946 51 H 0.067 0.933 52 H 0.052 0.948 53 H 0.045 0.955 54 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.529 8.664 16.437 35.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.036 4.036 3 H 0.120 0.880 4 C 0.000 4.000 5 N -0.325 5.325 6 C 0.292 3.708 7 O -0.425 6.425 8 C 0.281 3.719 9 O -0.426 6.426 10 N -0.340 5.340 11 C 0.005 3.995 12 C -0.143 4.143 13 C -0.013 4.013 14 C -0.581 4.581 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.791 3.209 19 H -0.191 1.191 20 H -0.211 1.211 21 H -0.192 1.192 22 N -0.266 5.266 23 C -0.070 4.070 24 C -0.149 4.149 25 C -0.108 4.108 26 C -0.203 4.203 27 C -0.150 4.150 28 C -0.074 4.074 29 H 0.089 0.911 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.101 0.899 34 H 0.259 0.741 35 H 0.256 0.744 36 H 0.082 0.918 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.072 0.928 43 H 0.099 0.901 44 H 0.063 0.937 45 H 0.095 0.905 46 H 0.076 0.924 47 H 0.089 0.911 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.086 0.914 52 H 0.071 0.929 53 H 0.064 0.936 54 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -29.842 8.672 16.473 35.173 hybrid contribution 0.120 -0.572 -0.563 0.811 sum -29.722 8.100 15.910 34.672 Atomic orbital electron populations 1.22322 0.94831 1.02836 1.03707 1.21965 0.94554 0.98654 0.88408 0.88018 1.21739 0.77932 1.01669 0.98682 1.45598 1.08505 1.51133 1.27284 1.19899 0.87621 0.80222 0.83090 1.90750 1.69392 1.46846 1.35480 1.20404 0.88956 0.79917 0.82628 1.90753 1.69976 1.46598 1.35239 1.45876 1.08281 1.51668 1.28172 1.21460 0.77686 1.00679 0.99711 1.21639 0.96992 0.99265 0.96450 1.18930 0.91040 0.95518 0.95779 1.21650 0.92554 1.32905 1.10977 0.91759 1.26000 0.97389 0.97254 0.99396 1.70095 1.02589 1.46676 1.37945 0.85483 0.76907 0.79241 0.79304 1.19146 1.21053 1.19164 1.62101 1.60095 1.02218 1.02226 1.22108 0.98268 0.97790 0.88841 1.21642 1.00681 0.95081 0.97458 1.21149 1.00039 0.95162 0.94470 1.21801 1.00251 1.00430 0.97845 1.21635 1.00599 0.98685 0.94092 1.22090 0.97578 0.88994 0.98706 0.91054 0.90639 0.92260 0.91194 0.89860 0.74075 0.74412 0.91796 0.91893 0.91503 0.91435 0.98540 0.98580 0.92788 0.90062 0.93748 0.90487 0.92422 0.91069 0.93450 0.92014 0.92658 0.91415 0.92904 0.93646 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 8.50 71.98 0.61 -0.65 16 2 C 0.07 0.73 2.49 44.92 0.11 0.84 16 3 H 0.10 0.89 8.09 -2.39 -0.02 0.87 16 4 C 0.12 1.77 4.69 86.38 0.40 2.18 16 5 N -0.67 -13.28 5.35 -464.40 -2.48 -15.77 16 6 C 0.51 13.31 7.89 87.27 0.69 14.00 16 7 O -0.55 -16.03 16.47 -3.26 -0.05 -16.08 16 8 C 0.50 15.15 7.89 87.27 0.69 15.84 16 9 O -0.55 -19.06 16.48 -3.26 -0.05 -19.12 16 10 N -0.69 -20.76 5.55 -464.40 -2.58 -23.34 16 11 C 0.13 4.48 5.67 86.38 0.49 4.97 16 12 C -0.11 -4.13 5.27 30.60 0.16 -3.97 16 13 C 0.03 1.30 4.97 29.85 0.15 1.45 16 14 C -0.54 -30.48 9.11 25.60 0.23 -30.25 16 15 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 16 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 17 N -0.93 -56.86 13.29 21.45 0.28 -56.58 16 18 Si 0.97 44.12 29.54 68.60 2.03 46.15 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 20 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 N -0.54 -6.56 4.18 -871.11 -3.64 -10.20 16 23 C 0.06 0.56 5.01 86.33 0.43 0.99 16 24 C -0.11 -1.22 5.38 30.64 0.16 -1.05 16 25 C -0.09 -1.02 2.79 -10.71 -0.03 -1.05 16 26 C -0.15 -1.68 9.20 71.98 0.66 -1.01 16 27 C -0.11 -1.57 5.38 30.65 0.16 -1.41 16 28 C 0.05 0.71 4.64 86.32 0.40 1.11 16 29 H 0.07 0.44 6.64 -2.39 -0.02 0.42 16 30 H 0.07 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.06 0.48 6.53 -2.38 -0.02 0.47 16 32 H 0.07 1.12 6.53 -2.38 -0.02 1.11 16 33 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.42 8.29 7.72 -92.71 -0.72 7.57 16 35 H 0.42 11.36 7.94 -92.71 -0.74 10.63 16 36 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 37 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 38 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 41 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 42 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 43 H 0.08 0.71 8.08 -2.38 -0.02 0.69 16 44 H 0.04 0.37 6.72 -2.39 -0.02 0.36 16 45 H 0.08 0.67 8.14 -2.38 -0.02 0.65 16 46 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.73 8.14 -2.39 -0.02 0.72 16 48 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 50 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 51 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 52 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 53 H 0.05 0.52 6.63 -2.39 -0.02 0.50 16 54 H 0.06 1.01 6.11 -2.39 -0.01 1.00 16 Total: -1.00 -67.65 423.83 -1.27 -68.92 By element: Atomic # 1 Polarization: 24.29 SS G_CDS: -0.57 Total: 23.72 kcal Atomic # 6 Polarization: -3.51 SS G_CDS: 5.80 Total: 2.29 kcal Atomic # 7 Polarization: -97.47 SS G_CDS: -8.42 Total: -105.89 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.11 Total: -35.20 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -67.65 -1.27 -68.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356450253.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.883 kcal (2) G-P(sol) polarization free energy of solvation -67.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds