Wall clock time and date at job start Sat Apr 11 2020 05:48:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48498 * 109.46942 * 59.99725 * 3 2 1 7 7 C 1.37877 * 120.00114 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00223 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00001 * 0.02562 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47060 * 179.97438 * 10 9 7 12 12 N 1.46500 * 109.47473 * 180.02562 * 11 10 9 13 13 C 1.34777 * 120.00376 * 180.02562 * 12 11 10 14 14 O 1.21591 * 119.99538 * 0.02562 * 13 12 11 15 15 N 1.34773 * 120.00462 * 180.02562 * 13 12 11 16 16 C 1.46490 * 120.00326 * 179.97438 * 15 13 12 17 17 H 1.08997 * 109.47402 * 35.00069 * 16 15 13 18 18 C 1.52995 * 109.47438 * 274.99882 * 16 15 13 19 19 C 1.53010 * 109.47121 * 300.00013 * 18 16 15 20 20 C 1.52990 * 109.47006 * 299.99755 * 19 18 16 21 21 C 1.53002 * 109.47432 * 60.00003 * 20 19 18 22 22 C 1.53000 * 109.47013 * 299.99995 * 21 20 19 23 23 H 1.09000 * 109.47194 * 299.99732 * 22 21 20 24 24 N 1.46902 * 109.47553 * 179.97438 * 22 21 20 25 25 C 1.47008 * 111.00096 * 183.63497 * 24 22 21 26 26 C 1.53104 * 109.25754 * 177.61038 * 25 24 22 27 27 O 1.43018 * 109.25952 * 56.84311 * 26 25 24 28 28 C 1.43014 * 113.73928 * 301.33424 * 27 26 25 29 29 C 1.47011 * 110.99630 * 59.99885 * 24 22 21 30 30 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46980 * 59.99570 * 9 7 2 32 32 H 1.08992 * 109.47158 * 299.99676 * 9 7 2 33 33 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 34 34 H 1.09001 * 109.47194 * 60.00258 * 10 9 7 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.97004 * 119.99396 * 0.02562 * 12 11 10 38 38 H 0.97004 * 119.99310 * 359.97438 * 15 13 12 39 39 H 1.09002 * 109.47559 * 59.99682 * 18 16 15 40 40 H 1.08999 * 109.47992 * 180.02562 * 18 16 15 41 41 H 1.08995 * 109.46872 * 179.97438 * 19 18 16 42 42 H 1.08997 * 109.46701 * 59.99750 * 19 18 16 43 43 H 1.09000 * 109.47154 * 300.00038 * 20 19 18 44 44 H 1.08997 * 109.47467 * 179.97438 * 20 19 18 45 45 H 1.08995 * 109.47641 * 180.02562 * 21 20 19 46 46 H 1.08997 * 109.47184 * 59.99448 * 21 20 19 47 47 H 1.09003 * 109.51051 * 297.53817 * 25 24 22 48 48 H 1.08999 * 109.51008 * 57.67351 * 25 24 22 49 49 H 1.09004 * 109.50243 * 296.91304 * 26 25 24 50 50 H 1.08999 * 109.54302 * 176.80734 * 26 25 24 51 51 H 1.08998 * 109.50674 * 298.73185 * 28 27 26 52 52 H 1.08999 * 109.54216 * 178.62156 * 28 27 26 53 53 H 1.09004 * 109.50935 * 302.32703 * 29 24 22 54 54 H 1.08999 * 109.51145 * 62.46077 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4324 -6.1006 0.0018 13 6 1.9832 -7.3713 0.0019 14 8 0.7878 -7.5935 0.0010 15 7 2.8590 -8.3957 0.0030 16 6 2.3707 -9.7769 0.0037 17 1 1.4562 -9.8393 -0.5861 18 6 2.0815 -10.2149 1.4408 19 6 3.3653 -10.1274 2.2688 20 6 4.4280 -11.0443 1.6602 21 6 4.7173 -10.6064 0.2231 22 6 3.4336 -10.6939 -0.6049 23 1 3.0703 -11.7215 -0.6044 24 7 3.7111 -10.2728 -1.9846 25 6 2.4810 -10.2616 -2.7895 26 6 2.8048 -9.7612 -4.1997 27 8 3.8195 -10.5901 -4.7730 28 6 5.0317 -10.6238 -4.0150 29 6 4.7304 -11.1330 -2.6030 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8897 32 1 0.6241 -2.5568 0.8902 33 1 2.8720 -3.6043 -0.8894 34 1 2.8720 -3.6043 0.8905 35 1 0.8540 -5.0446 0.8914 36 1 0.8534 -5.0452 -0.8885 37 1 3.3861 -5.9233 0.0021 38 1 3.8127 -8.2184 0.0033 39 1 1.3243 -9.5617 1.8744 40 1 1.7186 -11.2427 1.4414 41 1 3.1591 -10.4390 3.2927 42 1 3.7285 -9.0997 2.2682 43 1 4.0647 -12.0720 1.6607 44 1 5.3427 -10.9817 2.2497 45 1 5.4741 -11.2599 -0.2106 46 1 5.0805 -9.5787 0.2225 47 1 2.0738 -11.2711 -2.8462 48 1 1.7495 -9.5988 -2.3271 49 1 3.1615 -8.7325 -4.1479 50 1 1.9075 -9.8045 -4.8170 51 1 5.4532 -9.6202 -3.9579 52 1 5.7453 -11.2913 -4.4980 53 1 5.6410 -11.1063 -2.0045 54 1 4.3592 -12.1564 -2.6566 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370569730.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:31 Heat of formation + Delta-G solvation = -113.372907 kcal Electronic energy + Delta-G solvation = -30936.152582 eV Core-core repulsion = 26905.992767 eV Total energy + Delta-G solvation = -4030.159815 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.73605 -40.48807 -39.17171 -36.92333 -36.05196 -35.15710 -34.66012 -32.97374 -32.23396 -31.15459 -30.42113 -28.36747 -27.06553 -25.38981 -24.94838 -23.07558 -22.95723 -22.27403 -22.07545 -21.29766 -20.09398 -19.35030 -18.51713 -17.86008 -17.24079 -16.97638 -16.78548 -16.48421 -16.26254 -16.06659 -15.94465 -15.80266 -15.49340 -15.38697 -15.22064 -14.85185 -14.62387 -14.25947 -13.81774 -13.72850 -13.64035 -13.49226 -13.32624 -13.16140 -12.91500 -12.76078 -12.53232 -12.37390 -12.32074 -12.30455 -12.27195 -11.67072 -11.63211 -11.58804 -11.46329 -11.39119 -11.25477 -11.09578 -10.89091 -10.66167 -10.55464 -10.26176 -9.65862 -9.39666 -8.18825 -6.30253 1.42174 1.42361 1.55664 1.78384 2.24465 2.42613 2.63908 2.93194 3.15021 3.40403 3.50628 3.79754 3.90072 3.95707 4.05606 4.13771 4.15591 4.19748 4.21702 4.25292 4.29544 4.35889 4.40630 4.50022 4.53083 4.58185 4.64585 4.69101 4.73417 4.78090 4.84840 4.94335 4.97838 4.99591 5.02680 5.07274 5.13044 5.18198 5.20692 5.30386 5.35908 5.49640 5.49971 5.58525 5.64998 5.72427 5.85382 5.92510 5.99842 6.09955 6.16654 6.23921 6.87376 7.20033 7.39377 7.68333 8.93642 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012677 B = 0.002292 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2208.242200 B =12212.938262 C =13367.605351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.967 3.033 4 H -0.258 1.258 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.099 4.099 11 C 0.153 3.847 12 N -0.732 5.732 13 C 0.699 3.301 14 O -0.643 6.643 15 N -0.708 5.708 16 C 0.173 3.827 17 H 0.061 0.939 18 C -0.129 4.129 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.108 4.108 22 C 0.086 3.914 23 H 0.061 0.939 24 N -0.532 5.532 25 C 0.021 3.979 26 C 0.067 3.933 27 O -0.405 6.405 28 C 0.058 3.942 29 C 0.019 3.981 30 H 0.263 0.737 31 H -0.009 1.009 32 H -0.008 1.008 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.043 0.957 37 H 0.409 0.591 38 H 0.408 0.592 39 H 0.042 0.958 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.079 0.921 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.073 0.927 49 H 0.051 0.949 50 H 0.102 0.898 51 H 0.057 0.943 52 H 0.115 0.885 53 H 0.111 0.889 54 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.452 -29.498 -1.470 33.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.181 1.181 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.577 4.577 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.137 4.137 11 C 0.028 3.972 12 N -0.388 5.388 13 C 0.399 3.601 14 O -0.525 6.525 15 N -0.364 5.364 16 C 0.067 3.933 17 H 0.079 0.921 18 C -0.168 4.168 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.146 4.146 22 C -0.023 4.023 23 H 0.079 0.921 24 N -0.257 5.257 25 C -0.107 4.107 26 C -0.010 4.010 27 O -0.324 6.324 28 C -0.019 4.019 29 C -0.108 4.108 30 H 0.072 0.928 31 H 0.010 0.990 32 H 0.010 0.990 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.245 0.755 38 H 0.245 0.755 39 H 0.060 0.940 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.098 0.902 45 H 0.103 0.897 46 H 0.089 0.911 47 H 0.059 0.941 48 H 0.092 0.908 49 H 0.070 0.930 50 H 0.120 0.880 51 H 0.076 0.924 52 H 0.133 0.867 53 H 0.129 0.871 54 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 14.406 -29.222 -1.646 32.622 hybrid contribution -0.124 0.732 0.186 0.766 sum 14.281 -28.490 -1.460 31.903 Atomic orbital electron populations 1.70120 1.07973 1.27723 1.51820 1.26032 0.95743 1.03583 0.94813 0.85363 0.79231 0.78610 0.77612 1.18128 1.20592 1.20577 1.21711 0.93747 0.91981 1.50258 0.91521 1.18938 0.94436 0.92985 0.95009 1.21573 0.98385 0.91748 1.01999 1.21007 0.91312 0.84727 1.00151 1.45010 1.10597 1.03692 1.79459 1.16148 0.85091 0.81320 0.77515 1.90879 1.16458 1.84799 1.60359 1.44800 1.08889 1.03893 1.78838 1.20780 0.96508 0.79831 0.96175 0.92055 1.21908 0.98479 1.01561 0.94854 1.21476 0.94644 1.00290 0.98863 1.21502 0.98989 0.99317 0.95087 1.21619 0.95502 1.02858 0.94611 1.21907 0.96288 0.96382 0.87703 0.92096 1.62201 1.09262 1.52730 1.01537 1.22703 0.92895 1.00390 0.94717 1.22628 0.91798 0.93752 0.92866 1.87961 1.24967 1.69112 1.50356 1.22855 0.86368 1.01973 0.90690 1.22889 0.97084 0.94565 0.96304 0.92824 0.99039 0.99007 0.91486 0.91429 0.93794 0.93824 0.75479 0.75482 0.93960 0.90031 0.91587 0.92529 0.91186 0.90239 0.89724 0.91062 0.94074 0.90817 0.93021 0.88028 0.92440 0.86686 0.87123 0.94084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.68 13.29 21.45 0.28 -57.39 16 2 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 3 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.54 -30.31 9.11 25.60 0.23 -30.07 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -3.88 5.27 30.59 0.16 -3.72 16 11 C 0.15 5.61 5.67 86.38 0.49 6.10 16 12 N -0.73 -21.02 5.56 -478.54 -2.66 -23.68 16 13 C 0.70 21.11 8.53 179.06 1.53 22.63 16 14 O -0.64 -25.59 16.01 -4.00 -0.06 -25.65 16 15 N -0.71 -14.58 4.07 -457.84 -1.86 -16.44 16 16 C 0.17 3.24 1.77 44.99 0.08 3.32 16 17 H 0.06 1.51 5.73 -2.39 -0.01 1.50 16 18 C -0.13 -2.28 5.60 30.60 0.17 -2.11 16 19 C -0.12 -1.53 5.77 30.59 0.18 -1.35 16 20 C -0.11 -0.93 5.92 30.59 0.18 -0.75 16 21 C -0.11 -0.92 4.80 30.59 0.15 -0.77 16 22 C 0.09 1.09 1.68 44.92 0.08 1.17 16 23 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 24 N -0.53 -7.67 4.43 -869.96 -3.85 -11.52 16 25 C 0.02 0.39 5.25 86.32 0.45 0.84 16 26 C 0.07 1.24 7.01 72.02 0.50 1.75 16 27 O -0.40 -7.84 10.83 -148.98 -1.61 -9.45 16 28 C 0.06 0.75 7.01 72.02 0.50 1.26 16 29 C 0.02 0.21 5.34 86.32 0.46 0.67 16 30 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 31 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 32 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 33 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.41 9.01 8.49 -92.71 -0.79 8.22 16 38 H 0.41 6.47 6.88 -92.71 -0.64 5.83 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.86 7.60 -2.39 -0.02 0.84 16 43 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 45 H 0.08 0.48 6.35 -2.39 -0.02 0.47 16 46 H 0.07 0.65 6.51 -2.39 -0.02 0.63 16 47 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 48 H 0.07 1.66 6.11 -2.39 -0.01 1.64 16 49 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 50 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 53 H 0.11 0.75 6.19 -2.39 -0.01 0.74 16 54 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 Total: -1.00 -73.28 410.66 -2.50 -75.78 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -0.54 Total: 21.70 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: 5.78 Total: 0.61 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -8.09 Total: -109.04 kcal Atomic # 8 Polarization: -33.43 SS G_CDS: -1.68 Total: -35.10 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -73.28 -2.50 -75.78 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370569730.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.592 kcal (2) G-P(sol) polarization free energy of solvation -73.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds