Wall clock time and date at job start Sat Apr 11 2020 05:48:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99605 * 2 1 4 4 H 1.48494 * 109.47415 * 269.99946 * 3 2 1 5 5 H 1.48503 * 109.47167 * 30.00063 * 3 2 1 6 6 H 1.48498 * 109.47123 * 149.99800 * 3 2 1 7 7 C 1.37874 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99950 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47363 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47367 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47428 * 179.97438 * 11 10 9 13 13 C 1.34774 * 120.00211 * 179.97438 * 12 11 10 14 14 O 1.21586 * 120.00048 * 0.02562 * 13 12 11 15 15 N 1.34773 * 119.99940 * 180.02562 * 13 12 11 16 16 C 1.46506 * 119.99969 * 180.02562 * 15 13 12 17 17 H 1.08999 * 109.47194 * 34.71875 * 16 15 13 18 18 C 1.52997 * 109.46691 * 274.72265 * 16 15 13 19 19 C 1.53006 * 109.46908 * 180.02562 * 18 16 15 20 20 C 1.52996 * 109.47416 * 59.99581 * 19 18 16 21 21 C 1.53000 * 109.47253 * 300.00429 * 20 19 18 22 22 C 1.52993 * 109.47100 * 154.71955 * 16 15 13 23 23 H 1.09001 * 109.47077 * 60.00676 * 22 16 15 24 24 N 1.46890 * 109.47531 * 299.99851 * 22 16 15 25 25 C 1.47020 * 111.00173 * 298.63583 * 24 22 16 26 26 C 1.53094 * 109.25631 * 177.60658 * 25 24 22 27 27 O 1.43009 * 109.26250 * 56.84965 * 26 25 24 28 28 C 1.43015 * 113.74062 * 301.32836 * 27 26 25 29 29 C 1.47021 * 111.00298 * 175.00024 * 24 22 16 30 30 H 0.96993 * 120.00440 * 0.02562 * 1 2 3 31 31 H 1.09007 * 109.46606 * 60.00005 * 9 7 2 32 32 H 1.08998 * 109.47358 * 300.00739 * 9 7 2 33 33 H 1.08998 * 109.47353 * 60.00160 * 10 9 7 34 34 H 1.09001 * 109.47005 * 300.00178 * 10 9 7 35 35 H 1.08998 * 109.47065 * 59.99602 * 11 10 9 36 36 H 1.09001 * 109.46892 * 299.99866 * 11 10 9 37 37 H 0.97004 * 119.99747 * 0.02562 * 12 11 10 38 38 H 0.97005 * 120.00161 * 359.72198 * 15 13 12 39 39 H 1.09001 * 109.47659 * 299.99430 * 18 16 15 40 40 H 1.08995 * 109.47574 * 60.00208 * 18 16 15 41 41 H 1.09005 * 109.46989 * 180.02562 * 19 18 16 42 42 H 1.08999 * 109.47016 * 299.99634 * 19 18 16 43 43 H 1.09004 * 109.46658 * 60.00353 * 20 19 18 44 44 H 1.08992 * 109.47375 * 180.02562 * 20 19 18 45 45 H 1.08998 * 109.47154 * 179.97438 * 21 20 19 46 46 H 1.08999 * 109.46803 * 299.99717 * 21 20 19 47 47 H 1.08992 * 109.50478 * 297.54056 * 25 24 22 48 48 H 1.08997 * 109.50301 * 57.67397 * 25 24 22 49 49 H 1.09001 * 109.50671 * 296.91215 * 26 25 24 50 50 H 1.09009 * 109.53993 * 176.80952 * 26 25 24 51 51 H 1.08996 * 109.50537 * 298.73446 * 28 27 26 52 52 H 1.08997 * 109.54322 * 178.62789 * 28 27 26 53 53 H 1.09001 * 109.50237 * 302.32827 * 29 24 22 54 54 H 1.08994 * 109.50250 * 62.46100 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2513 -2.4991 0.0017 10 6 2.2455 -3.6619 0.0015 11 6 1.4807 -4.9871 0.0020 12 7 2.4327 -6.1005 0.0011 13 6 1.9836 -7.3712 0.0019 14 8 0.7882 -7.5935 0.0029 15 7 2.8595 -8.3955 0.0017 16 6 2.3712 -9.7768 0.0020 17 1 1.4535 -9.8380 -0.5829 18 6 2.0899 -10.2179 1.4397 19 6 1.5806 -11.6607 1.4402 20 6 2.6406 -12.5759 0.8240 21 6 2.9219 -12.1348 -0.6137 22 6 3.4308 -10.6923 -0.6144 23 1 4.3485 -10.6313 -0.0293 24 7 3.7009 -10.2689 -1.9947 25 6 2.4904 -10.3693 -2.8231 26 6 2.8009 -9.8633 -4.2342 27 8 3.8911 -10.6141 -4.7754 28 6 5.0866 -10.5382 -3.9941 29 6 4.7993 -11.0511 -2.5805 30 1 -0.4850 0.8399 -0.0004 31 1 0.6243 -2.5574 -0.8881 32 1 0.6249 -2.5563 0.8919 33 1 2.8729 -3.6038 0.8909 34 1 2.8715 -3.6045 -0.8890 35 1 0.8536 -5.0450 -0.8877 36 1 0.8544 -5.0447 0.8923 37 1 3.3864 -5.9232 0.0007 38 1 3.8132 -8.2182 -0.0032 39 1 3.0076 -10.1568 2.0248 40 1 1.3351 -9.5657 1.8788 41 1 1.3798 -11.9748 2.4645 42 1 0.6630 -11.7222 0.8551 43 1 3.5582 -12.5144 1.4092 44 1 2.2776 -13.6036 0.8239 45 1 3.6774 -12.7865 -1.0525 46 1 2.0043 -12.1963 -1.1988 47 1 2.1682 -11.4094 -2.8721 48 1 1.6982 -9.7624 -2.3849 49 1 3.0714 -8.8083 -4.1913 50 1 1.9227 -9.9884 -4.8678 51 1 5.4235 -9.5028 -3.9442 52 1 5.8618 -11.1515 -4.4533 53 1 5.6924 -10.9417 -1.9651 54 1 4.5139 -12.1020 -2.6256 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370569737.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:44 Heat of formation + Delta-G solvation = -117.316236 kcal Electronic energy + Delta-G solvation = -30730.723036 eV Core-core repulsion = 26700.392226 eV Total energy + Delta-G solvation = -4030.330810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.68113 -40.58537 -39.09856 -36.95825 -35.97502 -35.19200 -35.06553 -32.95642 -32.16411 -31.01415 -30.25661 -28.32850 -27.05285 -25.17642 -25.00157 -23.78458 -22.81725 -22.27185 -21.59916 -21.53566 -20.39229 -19.06757 -18.53232 -17.81365 -17.46762 -17.03076 -16.74712 -16.51394 -16.11003 -16.02447 -15.99097 -15.56352 -15.48690 -15.35463 -15.30460 -14.84839 -14.65133 -14.27272 -14.02336 -13.77785 -13.66989 -13.59171 -13.31944 -13.13883 -12.75598 -12.66629 -12.55749 -12.53230 -12.35416 -12.08561 -11.97874 -11.91102 -11.67575 -11.65465 -11.55909 -11.42051 -11.25399 -11.16821 -11.07220 -10.66281 -10.54704 -10.26523 -9.66491 -9.28377 -8.18681 -6.30238 1.42010 1.43599 1.54482 1.76987 2.23742 2.42620 2.68714 2.94041 3.14987 3.36013 3.53925 3.80515 3.92056 4.01325 4.03671 4.05565 4.17646 4.19505 4.20626 4.25132 4.25743 4.34932 4.37913 4.42744 4.49778 4.57955 4.62224 4.72183 4.76781 4.78975 4.85887 4.93891 4.97178 4.97890 5.01948 5.09281 5.12496 5.12874 5.18233 5.22254 5.32077 5.44175 5.49667 5.58241 5.64990 5.72256 5.85229 5.92800 6.00784 6.10410 6.17114 6.23843 6.87167 7.20750 7.39310 7.68018 8.93577 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.013800 B = 0.002183 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2028.474470 B =12821.459982 C =14155.797016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.004 4.004 3 Si 0.968 3.032 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.260 1.260 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.024 3.976 10 C -0.099 4.099 11 C 0.152 3.848 12 N -0.732 5.732 13 C 0.699 3.301 14 O -0.643 6.643 15 N -0.714 5.714 16 C 0.176 3.824 17 H 0.059 0.941 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.109 4.109 21 C -0.145 4.145 22 C 0.087 3.913 23 H 0.109 0.891 24 N -0.531 5.531 25 C 0.020 3.980 26 C 0.065 3.935 27 O -0.404 6.404 28 C 0.057 3.943 29 C 0.020 3.980 30 H 0.263 0.737 31 H -0.009 1.009 32 H -0.008 1.008 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.410 0.590 38 H 0.410 0.590 39 H 0.080 0.920 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.050 0.950 43 H 0.078 0.922 44 H 0.073 0.927 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.069 0.931 49 H 0.049 0.951 50 H 0.102 0.898 51 H 0.055 0.945 52 H 0.115 0.885 53 H 0.106 0.894 54 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.121 -30.788 -1.995 33.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.202 4.202 3 Si 0.792 3.208 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.085 0.915 9 C -0.014 4.014 10 C -0.137 4.137 11 C 0.027 3.973 12 N -0.387 5.387 13 C 0.399 3.601 14 O -0.525 6.525 15 N -0.368 5.368 16 C 0.070 3.930 17 H 0.077 0.923 18 C -0.165 4.165 19 C -0.154 4.154 20 C -0.147 4.147 21 C -0.184 4.184 22 C -0.022 4.022 23 H 0.127 0.873 24 N -0.255 5.255 25 C -0.108 4.108 26 C -0.012 4.012 27 O -0.323 6.323 28 C -0.019 4.019 29 C -0.108 4.108 30 H 0.072 0.928 31 H 0.009 0.991 32 H 0.010 0.990 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.246 0.754 38 H 0.246 0.754 39 H 0.099 0.901 40 H 0.059 0.941 41 H 0.093 0.907 42 H 0.069 0.931 43 H 0.097 0.903 44 H 0.092 0.908 45 H 0.100 0.900 46 H 0.074 0.926 47 H 0.067 0.933 48 H 0.088 0.912 49 H 0.067 0.933 50 H 0.120 0.880 51 H 0.073 0.927 52 H 0.133 0.867 53 H 0.124 0.876 54 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.052 -30.470 -2.175 33.219 hybrid contribution 0.013 0.786 0.169 0.804 sum 13.066 -29.684 -2.005 32.494 Atomic orbital electron populations 1.70114 1.07971 1.27791 1.51743 1.26037 0.95750 1.03592 0.94804 0.85407 0.78691 0.78243 0.78458 1.19819 1.21042 1.18371 1.21678 0.93747 0.91982 1.50380 0.91511 1.18937 0.94441 0.92987 0.95008 1.21572 0.98387 0.91723 1.02018 1.21012 0.91336 0.84761 1.00143 1.45011 1.10645 1.03660 1.79411 1.16148 0.85091 0.81334 0.77500 1.90878 1.16503 1.84802 1.60342 1.44792 1.09018 1.04081 1.78953 1.20798 0.96829 0.79211 0.96142 0.92333 1.21902 1.01654 0.96920 0.96033 1.21502 0.98623 0.93601 1.01679 1.21459 0.99339 0.99095 0.94774 1.22139 1.01696 0.96138 0.98455 1.21985 0.98683 0.92419 0.89076 0.87321 1.62402 1.06425 1.55012 1.01662 1.22708 0.93481 1.00367 0.94270 1.22638 0.90189 0.94933 0.93434 1.87958 1.21827 1.71894 1.50613 1.22850 0.86936 1.01726 0.90416 1.22850 0.95484 0.95989 0.96482 0.92819 0.99062 0.98994 0.91392 0.91480 0.93874 0.93768 0.75381 0.75372 0.90144 0.94082 0.90734 0.93074 0.90348 0.90819 0.90036 0.92564 0.93281 0.91233 0.93302 0.88013 0.92675 0.86693 0.87569 0.93312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.29 21.45 0.28 -57.48 16 2 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 3 Si 0.97 44.08 29.54 68.60 2.03 46.11 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 5 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 6 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 7 C -0.54 -30.41 9.11 25.60 0.23 -30.17 16 8 H 0.07 3.52 7.74 -2.91 -0.02 3.50 16 9 C 0.02 1.27 4.97 29.85 0.15 1.42 16 10 C -0.10 -3.89 5.27 30.59 0.16 -3.73 16 11 C 0.15 5.62 5.67 86.38 0.49 6.11 16 12 N -0.73 -21.13 5.56 -478.54 -2.66 -23.79 16 13 C 0.70 21.32 8.53 179.06 1.53 22.85 16 14 O -0.64 -25.89 16.00 -3.99 -0.06 -25.96 16 15 N -0.71 -14.76 4.91 -457.83 -2.25 -17.01 16 16 C 0.18 3.28 1.60 44.99 0.07 3.36 16 17 H 0.06 1.48 5.81 -2.39 -0.01 1.47 16 18 C -0.13 -2.20 5.50 30.60 0.17 -2.04 16 19 C -0.12 -1.58 5.92 30.60 0.18 -1.40 16 20 C -0.11 -1.00 5.92 30.59 0.18 -0.82 16 21 C -0.14 -1.51 4.50 30.58 0.14 -1.38 16 22 C 0.09 1.06 1.75 44.90 0.08 1.14 16 23 H 0.11 0.98 8.12 -2.39 -0.02 0.96 16 24 N -0.53 -7.48 4.55 -870.09 -3.96 -11.44 16 25 C 0.02 0.35 4.86 86.31 0.42 0.77 16 26 C 0.07 1.21 7.01 72.01 0.50 1.71 16 27 O -0.40 -7.72 10.83 -148.98 -1.61 -9.33 16 28 C 0.06 0.74 7.01 72.01 0.50 1.25 16 29 C 0.02 0.21 5.31 86.31 0.46 0.66 16 30 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 31 H -0.01 -0.52 8.14 -2.38 -0.02 -0.54 16 32 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 33 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 34 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 35 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.41 9.01 8.49 -92.71 -0.79 8.23 16 38 H 0.41 6.19 8.62 -92.70 -0.80 5.39 16 39 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 0.90 8.14 -2.38 -0.02 0.89 16 42 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 43 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 44 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 45 H 0.08 0.69 6.57 -2.39 -0.02 0.67 16 46 H 0.06 0.76 6.44 -2.39 -0.02 0.74 16 47 H 0.05 0.83 6.42 -2.39 -0.02 0.81 16 48 H 0.07 1.55 6.22 -2.39 -0.01 1.54 16 49 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 50 H 0.10 1.71 8.14 -2.38 -0.02 1.69 16 51 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 52 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 53 H 0.11 0.70 8.13 -2.39 -0.02 0.68 16 54 H 0.05 0.51 6.56 -2.39 -0.02 0.49 16 Total: -1.00 -73.94 412.09 -3.20 -77.15 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -0.70 Total: 21.81 kcal Atomic # 6 Polarization: -5.78 SS G_CDS: 5.73 Total: -0.05 kcal Atomic # 7 Polarization: -101.14 SS G_CDS: -8.58 Total: -109.72 kcal Atomic # 8 Polarization: -33.61 SS G_CDS: -1.68 Total: -35.29 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.94 -3.20 -77.15 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370569737.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.169 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds