Wall clock time and date at job start Sat Apr 11 2020 05:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 120.00099 * 2 1 4 4 H 1.48507 * 109.46810 * 270.00184 * 3 2 1 5 5 H 1.48502 * 109.47208 * 29.99210 * 3 2 1 6 6 H 1.48489 * 109.47237 * 150.00074 * 3 2 1 7 7 C 1.37870 * 119.99769 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00185 * 359.97438 * 7 2 1 9 9 C 1.50705 * 120.00064 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47074 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46755 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46965 * 180.02562 * 11 10 9 13 13 C 1.34783 * 119.99851 * 180.27743 * 12 11 10 14 14 O 1.21586 * 119.99809 * 359.72344 * 13 12 11 15 15 N 1.34770 * 119.99889 * 179.72480 * 13 12 11 16 16 C 1.46503 * 120.00149 * 179.97438 * 15 13 12 17 17 H 1.08998 * 109.46857 * 325.90336 * 16 15 13 18 18 C 1.53002 * 109.46861 * 85.89715 * 16 15 13 19 19 C 1.52998 * 109.47142 * 60.00470 * 18 16 15 20 20 C 1.52998 * 109.47378 * 59.99880 * 19 18 16 21 21 C 1.53004 * 109.46786 * 299.99929 * 20 19 18 22 22 C 1.52998 * 109.47411 * 205.89683 * 16 15 13 23 23 H 1.08994 * 109.46968 * 179.97438 * 22 16 15 24 24 N 1.46902 * 109.47090 * 59.99891 * 22 16 15 25 25 C 1.47007 * 111.00167 * 183.10857 * 24 22 16 26 26 C 1.53105 * 109.25882 * 177.61131 * 25 24 22 27 27 O 1.43012 * 109.25997 * 56.84900 * 26 25 24 28 28 C 1.43027 * 113.73387 * 301.33038 * 27 26 25 29 29 C 1.47012 * 110.99807 * 59.47193 * 24 22 16 30 30 H 0.97000 * 119.99647 * 0.02562 * 1 2 3 31 31 H 1.09001 * 109.46765 * 60.00295 * 9 7 2 32 32 H 1.08998 * 109.47160 * 300.00856 * 9 7 2 33 33 H 1.09001 * 109.47219 * 60.00407 * 10 9 7 34 34 H 1.09002 * 109.47359 * 299.99696 * 10 9 7 35 35 H 1.09001 * 109.47021 * 60.00167 * 11 10 9 36 36 H 1.08994 * 109.47444 * 299.99817 * 11 10 9 37 37 H 0.96996 * 120.00112 * 359.97438 * 12 11 10 38 38 H 0.97006 * 120.00191 * 359.97438 * 15 13 12 39 39 H 1.09003 * 109.46879 * 180.02562 * 18 16 15 40 40 H 1.09001 * 109.46966 * 300.00269 * 18 16 15 41 41 H 1.08996 * 109.47154 * 180.02562 * 19 18 16 42 42 H 1.09003 * 109.47077 * 299.99688 * 19 18 16 43 43 H 1.08994 * 109.46968 * 59.99802 * 20 19 18 44 44 H 1.08998 * 109.47264 * 180.02562 * 20 19 18 45 45 H 1.09001 * 109.46670 * 179.97438 * 21 20 19 46 46 H 1.09003 * 109.47213 * 299.99914 * 21 20 19 47 47 H 1.09006 * 109.50703 * 297.54436 * 25 24 22 48 48 H 1.08997 * 109.50986 * 57.67363 * 25 24 22 49 49 H 1.09001 * 109.50149 * 296.90980 * 26 25 24 50 50 H 1.08996 * 109.53763 * 176.80381 * 26 25 24 51 51 H 1.09003 * 109.50300 * 298.73151 * 28 27 26 52 52 H 1.09002 * 109.53564 * 178.63022 * 28 27 26 53 53 H 1.09003 * 109.50946 * 302.33061 * 29 24 22 54 54 H 1.08998 * 109.51153 * 62.41524 * 29 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4002 5 1 1.4466 2.6528 0.6999 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0014 9 6 3.5116 -1.1941 0.0000 10 6 4.0215 -2.6366 0.0001 11 6 5.5515 -2.6366 0.0001 12 7 6.0398 -4.0178 -0.0004 13 6 7.3649 -4.2641 0.0052 14 8 8.1550 -3.3399 0.0056 15 7 7.8141 -5.5347 0.0104 16 6 9.2545 -5.8025 0.0159 17 1 9.7691 -5.0339 -0.5607 18 6 9.7699 -5.7901 1.4564 19 6 9.0476 -6.8689 2.2659 20 6 9.3140 -8.2397 1.6407 21 6 8.7984 -8.2521 0.2002 22 6 9.5208 -7.1733 -0.6093 23 1 10.5925 -7.3722 -0.6055 24 7 9.0259 -7.1852 -1.9923 25 6 9.1983 -8.5117 -2.6022 26 6 8.6167 -8.4958 -4.0184 27 8 9.2522 -7.4640 -4.7778 28 6 9.1036 -6.1586 -4.2127 29 6 9.6902 -6.1508 -2.7985 30 1 -0.4849 0.8401 -0.0004 31 1 3.8752 -0.6797 0.8895 32 1 3.8746 -0.6808 -0.8904 33 1 3.6578 -3.1506 -0.8897 34 1 3.6585 -3.1502 0.8903 35 1 5.9148 -2.1227 0.8901 36 1 5.9149 -2.1229 -0.8898 37 1 5.4095 -4.7551 -0.0003 38 1 7.1838 -6.2721 0.0104 39 1 10.8417 -5.9889 1.4605 40 1 9.5801 -4.8135 1.9018 41 1 9.4145 -6.8598 3.2922 42 1 7.9759 -6.6697 2.2618 43 1 10.3855 -8.4388 1.6448 44 1 8.7990 -9.0082 2.2171 45 1 8.9886 -9.2285 -0.2453 46 1 7.7267 -8.0529 0.1961 47 1 10.2596 -8.7564 -2.6473 48 1 8.6772 -9.2583 -2.0031 49 1 7.5448 -8.3042 -3.9694 50 1 8.7927 -9.4599 -4.4955 51 1 8.0458 -5.8990 -4.1695 52 1 9.6318 -5.4319 -4.8299 53 1 9.5281 -5.1741 -2.3426 54 1 10.7594 -6.3572 -2.8462 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370569738.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:48:49 Heat of formation + Delta-G solvation = -110.779521 kcal Electronic energy + Delta-G solvation = -30984.311738 eV Core-core repulsion = 26954.264381 eV Total energy + Delta-G solvation = -4030.047357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -41.72081 -40.49046 -39.17237 -36.95239 -36.05594 -35.11130 -34.64718 -33.20334 -32.27578 -31.14583 -30.49579 -28.66098 -27.07439 -25.37660 -24.67916 -23.06528 -22.93668 -22.24038 -21.97777 -21.29851 -20.09839 -19.37391 -18.88723 -17.85846 -17.26507 -16.99528 -16.79396 -16.36342 -16.23183 -16.05599 -15.94113 -15.81790 -15.47213 -15.40123 -15.18626 -14.82005 -14.75619 -14.62524 -13.86121 -13.75865 -13.67006 -13.57119 -13.33031 -13.16213 -12.92643 -12.71301 -12.67375 -12.37343 -12.30051 -12.28328 -11.90634 -11.76571 -11.61721 -11.57707 -11.46567 -11.39851 -11.31807 -11.19078 -10.89173 -10.75428 -10.66453 -10.24674 -9.64746 -9.39265 -8.28811 -6.32469 1.37415 1.38942 1.51030 1.79814 2.25483 2.37056 2.63818 2.93115 3.07069 3.40412 3.51265 3.79613 3.90108 3.95602 4.05331 4.13178 4.14180 4.15773 4.21125 4.24226 4.29454 4.35575 4.40152 4.49760 4.52791 4.53598 4.64638 4.68935 4.73348 4.78128 4.84240 4.92213 4.92436 4.94615 5.02284 5.04917 5.06222 5.12560 5.20028 5.29989 5.35563 5.44742 5.49204 5.57544 5.57909 5.64676 5.67315 5.93150 5.99684 6.10565 6.16434 6.28513 6.75500 7.19376 7.32435 7.68629 8.87668 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.002390 C = 0.002179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.949252 B =11710.759343 C =12846.435431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C 0.005 3.995 3 Si 0.947 3.053 4 H -0.267 1.267 5 H -0.284 1.284 6 H -0.248 1.248 7 C -0.530 4.530 8 H 0.038 0.962 9 C -0.011 4.011 10 C -0.098 4.098 11 C 0.150 3.850 12 N -0.735 5.735 13 C 0.700 3.300 14 O -0.641 6.641 15 N -0.709 5.709 16 C 0.174 3.826 17 H 0.063 0.937 18 C -0.128 4.128 19 C -0.115 4.115 20 C -0.111 4.111 21 C -0.110 4.110 22 C 0.085 3.915 23 H 0.061 0.939 24 N -0.533 5.533 25 C 0.019 3.981 26 C 0.058 3.942 27 O -0.405 6.405 28 C 0.066 3.934 29 C 0.022 3.978 30 H 0.266 0.734 31 H 0.020 0.980 32 H 0.019 0.981 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.052 0.948 36 H 0.052 0.948 37 H 0.408 0.592 38 H 0.407 0.593 39 H 0.081 0.919 40 H 0.043 0.957 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.069 0.931 44 H 0.078 0.922 45 H 0.084 0.916 46 H 0.071 0.929 47 H 0.041 0.959 48 H 0.110 0.890 49 H 0.056 0.944 50 H 0.115 0.885 51 H 0.051 0.949 52 H 0.103 0.897 53 H 0.075 0.925 54 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.929 -23.996 -1.465 34.633 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.592 5.592 2 C -0.192 4.192 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.210 1.210 6 H -0.172 1.172 7 C -0.568 4.568 8 H 0.056 0.944 9 C -0.049 4.049 10 C -0.136 4.136 11 C 0.025 3.975 12 N -0.390 5.390 13 C 0.400 3.600 14 O -0.523 6.523 15 N -0.365 5.365 16 C 0.068 3.932 17 H 0.081 0.919 18 C -0.167 4.167 19 C -0.153 4.153 20 C -0.149 4.149 21 C -0.148 4.148 22 C -0.023 4.023 23 H 0.079 0.921 24 N -0.258 5.258 25 C -0.108 4.108 26 C -0.019 4.019 27 O -0.324 6.324 28 C -0.011 4.011 29 C -0.106 4.106 30 H 0.075 0.925 31 H 0.039 0.961 32 H 0.037 0.963 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.244 0.756 38 H 0.244 0.756 39 H 0.100 0.900 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.088 0.912 44 H 0.097 0.903 45 H 0.102 0.898 46 H 0.089 0.911 47 H 0.060 0.940 48 H 0.128 0.872 49 H 0.074 0.926 50 H 0.133 0.867 51 H 0.069 0.931 52 H 0.121 0.879 53 H 0.093 0.907 54 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 25.096 -22.996 -1.643 34.078 hybrid contribution -0.124 0.557 0.172 0.596 sum 24.972 -22.439 -1.471 33.604 Atomic orbital electron populations 1.70061 1.08201 1.28112 1.52785 1.25973 0.95581 1.03397 0.94237 0.85708 0.79528 0.78554 0.79189 1.19255 1.21009 1.17159 1.21466 0.91888 0.93261 1.50143 0.94391 1.19458 0.94054 0.94685 0.96747 1.21459 0.92065 0.98023 1.02041 1.21075 0.93887 0.81689 1.00842 1.45035 1.05225 1.09245 1.79518 1.16119 0.82478 0.83883 0.77494 1.90871 1.56077 1.44977 1.60388 1.44818 1.07995 1.04904 1.78796 1.20764 0.80188 0.96160 0.96065 0.91907 1.21905 1.00822 0.99190 0.94823 1.21477 1.00327 0.94542 0.98950 1.21503 1.01890 0.96579 0.94958 1.21645 1.00385 0.97905 0.94829 1.21901 0.98263 0.94555 0.87586 0.92124 1.62190 1.57453 1.04647 1.01554 1.22887 1.00323 0.91340 0.96299 1.22851 0.96700 0.91679 0.90662 1.87962 1.76980 1.16692 1.50757 1.22637 1.00603 0.84868 0.92977 1.22701 0.96606 0.96694 0.94645 0.92516 0.96142 0.96285 0.91834 0.91796 0.93010 0.92988 0.75616 0.75587 0.90040 0.93789 0.91570 0.92528 0.91186 0.90334 0.89783 0.91088 0.94034 0.87194 0.92553 0.86739 0.93114 0.87888 0.90704 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.72 13.96 21.45 0.30 -59.42 16 2 C 0.00 0.29 5.47 84.65 0.46 0.75 16 3 Si 0.95 44.78 27.47 68.60 1.88 46.67 16 4 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.28 -13.19 7.11 99.48 0.71 -12.49 16 6 H -0.25 -11.00 6.54 99.48 0.65 -10.35 16 7 C -0.53 -30.28 9.66 25.60 0.25 -30.03 16 8 H 0.04 2.35 7.99 -2.91 -0.02 2.33 16 9 C -0.01 -0.53 4.04 29.85 0.12 -0.41 16 10 C -0.10 -3.59 5.27 30.59 0.16 -3.43 16 11 C 0.15 4.92 5.67 86.38 0.49 5.41 16 12 N -0.73 -19.69 5.56 -478.53 -2.66 -22.35 16 13 C 0.70 19.82 8.54 179.05 1.53 21.35 16 14 O -0.64 -23.85 15.99 -3.99 -0.06 -23.91 16 15 N -0.71 -13.82 4.07 -457.82 -1.86 -15.68 16 16 C 0.17 3.08 1.88 44.99 0.08 3.16 16 17 H 0.06 1.46 5.75 -2.39 -0.01 1.45 16 18 C -0.13 -2.12 5.61 30.59 0.17 -1.94 16 19 C -0.12 -1.44 5.77 30.59 0.18 -1.26 16 20 C -0.11 -0.89 5.92 30.59 0.18 -0.71 16 21 C -0.11 -0.90 4.70 30.60 0.14 -0.75 16 22 C 0.09 1.04 1.68 44.91 0.08 1.11 16 23 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 24 N -0.53 -7.42 4.43 -869.99 -3.85 -11.27 16 25 C 0.02 0.20 5.26 86.32 0.45 0.66 16 26 C 0.06 0.74 7.01 72.02 0.50 1.25 16 27 O -0.40 -7.65 10.83 -148.98 -1.61 -9.26 16 28 C 0.07 1.18 7.01 72.01 0.50 1.69 16 29 C 0.02 0.37 5.32 86.31 0.46 0.83 16 30 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 31 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 32 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 33 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.41 8.61 8.49 -92.71 -0.79 7.83 16 38 H 0.41 6.18 6.88 -92.70 -0.64 5.54 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.06 0.82 7.60 -2.39 -0.02 0.80 16 43 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 44 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 45 H 0.08 0.47 6.30 -2.39 -0.02 0.45 16 46 H 0.07 0.63 6.50 -2.39 -0.02 0.61 16 47 H 0.04 0.47 8.14 -2.38 -0.02 0.45 16 48 H 0.11 0.75 6.12 -2.39 -0.01 0.73 16 49 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 51 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 52 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 53 H 0.07 1.57 6.17 -2.39 -0.01 1.55 16 54 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -73.23 407.03 -2.69 -75.92 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: -0.59 Total: 21.64 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 5.77 Total: -2.33 kcal Atomic # 7 Polarization: -100.65 SS G_CDS: -8.07 Total: -108.72 kcal Atomic # 8 Polarization: -31.50 SS G_CDS: -1.68 Total: -33.17 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.88 Total: 46.67 kcal Total: -73.23 -2.69 -75.92 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370569738.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.861 kcal (2) G-P(sol) polarization free energy of solvation -73.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds