Wall clock time and date at job start Sat Apr 11 2020 05:49:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99875 * 2 1 4 4 H 1.48508 * 109.46868 * 270.00294 * 3 2 1 5 5 H 1.48494 * 109.47053 * 29.99847 * 3 2 1 6 6 H 1.48501 * 109.47470 * 150.00393 * 3 2 1 7 7 C 1.37874 * 120.00392 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00510 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99789 * 359.97438 * 7 2 1 10 10 C 1.53006 * 109.47126 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47127 * 179.97438 * 10 9 7 12 12 N 1.46496 * 109.46953 * 179.97438 * 11 10 9 13 13 C 1.34779 * 120.00107 * 180.02562 * 12 11 10 14 14 O 1.21345 * 119.99759 * 359.97438 * 13 12 11 15 15 C 1.49446 * 120.00046 * 180.02562 * 13 12 11 16 16 O 1.21345 * 120.00194 * 359.97438 * 15 13 12 17 17 N 1.34779 * 120.00046 * 179.97438 * 15 13 12 18 18 C 1.46496 * 120.00447 * 179.97438 * 17 15 13 19 19 C 1.53002 * 109.47237 * 180.02562 * 18 17 15 20 20 N 1.46906 * 109.47053 * 180.02562 * 19 18 17 21 21 C 1.46895 * 110.99789 * 179.97438 * 20 19 18 22 22 C 1.54240 * 108.89816 * 277.87987 * 21 20 19 23 23 C 1.50469 * 108.52576 * 159.26704 * 22 21 20 24 24 C 1.54066 * 112.49955 * 94.15517 * 23 22 21 25 25 C 1.54061 * 112.81427 * 318.27881 * 24 23 22 26 26 C 1.50474 * 112.49950 * 318.29101 * 25 24 23 27 27 C 1.45546 * 108.89367 * 155.00152 * 21 20 19 28 28 H 0.96996 * 120.00505 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47224 * 60.00304 * 9 7 2 30 30 H 1.08993 * 109.47046 * 299.99370 * 9 7 2 31 31 H 1.09001 * 109.46998 * 59.99687 * 10 9 7 32 32 H 1.09004 * 109.47297 * 300.00099 * 10 9 7 33 33 H 1.09001 * 109.46832 * 60.00321 * 11 10 9 34 34 H 1.08996 * 109.46952 * 300.00302 * 11 10 9 35 35 H 0.96999 * 120.00356 * 0.02562 * 12 11 10 36 36 H 0.97006 * 119.99798 * 0.02562 * 17 15 13 37 37 H 1.09001 * 109.47059 * 60.00204 * 18 17 15 38 38 H 1.09004 * 109.47074 * 300.00161 * 18 17 15 39 39 H 1.08992 * 109.47056 * 59.99825 * 19 18 17 40 40 H 1.09004 * 109.47006 * 299.99941 * 19 18 17 41 41 H 1.00902 * 111.00068 * 56.04103 * 20 19 18 42 42 H 1.09002 * 108.87335 * 36.39749 * 21 20 19 43 43 H 1.09004 * 109.62950 * 278.98232 * 22 21 20 44 44 H 1.09002 * 109.62698 * 39.55479 * 22 21 20 45 45 H 1.09000 * 108.87710 * 333.37129 * 23 22 21 46 46 H 1.09006 * 108.87757 * 214.92815 * 23 22 21 47 47 H 1.09001 * 108.81441 * 197.42331 * 24 23 22 48 48 H 1.09000 * 108.72909 * 79.08127 * 24 23 22 49 49 H 1.09002 * 108.87752 * 197.50897 * 25 24 23 50 50 H 1.09003 * 108.87669 * 79.06489 * 25 24 23 51 51 H 1.09003 * 109.62399 * 334.43506 * 26 25 24 52 52 H 1.09006 * 109.62604 * 213.86339 * 26 25 24 53 53 H 1.09006 * 108.89217 * 303.44006 * 27 21 20 54 54 H 1.08997 * 108.89486 * 62.02432 * 27 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4002 5 1 1.4465 2.6526 0.7000 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0015 11 6 1.4805 -4.9871 0.0033 12 7 2.4325 -6.1005 0.0024 13 6 1.9833 -7.3713 0.0032 14 8 0.7903 -7.5930 0.0051 15 6 2.9546 -8.5071 0.0029 16 8 4.1476 -8.2853 0.0015 17 7 2.5054 -9.7778 0.0043 18 6 3.4574 -10.8913 0.0034 19 6 2.6924 -12.2164 0.0046 20 7 3.6471 -13.3329 0.0044 21 6 2.9468 -14.6242 0.0061 22 6 2.5344 -14.9669 1.4523 23 6 1.4165 -15.9730 1.4050 24 6 1.9241 -17.4238 1.5100 25 6 3.1949 -17.6739 0.6757 26 6 3.1361 -17.0135 -0.6751 27 6 3.8186 -15.6339 -0.5761 28 1 -0.4851 0.8400 0.0004 29 1 0.6241 -2.5575 -0.8880 30 1 0.6249 -2.5563 0.8920 31 1 2.8728 -3.6039 0.8909 32 1 2.8714 -3.6047 -0.8891 33 1 0.8529 -5.0455 -0.8860 34 1 0.8548 -5.0441 0.8940 35 1 3.3862 -5.9233 0.0013 36 1 1.5517 -9.9551 0.0050 37 1 4.0853 -10.8331 0.8924 38 1 4.0827 -10.8340 -0.8876 39 1 2.0647 -12.2743 -0.8846 40 1 2.0668 -12.2739 0.8954 41 1 4.2826 -13.2655 0.7852 42 1 2.0482 -14.5389 -0.6050 43 1 3.3858 -15.3903 1.9853 44 1 2.1935 -14.0643 1.9594 45 1 0.8759 -15.8556 0.4658 46 1 0.7317 -15.7784 2.2305 47 1 1.1391 -18.0968 1.1651 48 1 2.1409 -17.6440 2.5553 49 1 3.3207 -18.7479 0.5381 50 1 4.0562 -17.2868 1.2203 51 1 2.0961 -16.8870 -0.9758 52 1 3.6594 -17.6293 -1.4067 53 1 4.1123 -15.3129 -1.5755 54 1 4.7121 -15.7271 0.0411 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000419652496.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:14 Heat of formation + Delta-G solvation = -126.945962 kcal Electronic energy + Delta-G solvation = -28172.148075 eV Core-core repulsion = 24141.399689 eV Total energy + Delta-G solvation = -4030.748387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.73890 -40.37143 -39.69139 -37.41953 -37.01580 -35.59098 -35.08835 -33.08599 -33.03942 -32.06108 -29.29930 -28.57715 -26.17407 -25.65152 -24.73930 -23.84823 -23.03279 -22.36675 -21.43820 -21.32035 -20.16995 -19.53876 -18.51306 -17.99440 -17.38105 -17.19421 -16.82660 -16.58281 -16.42304 -16.14612 -16.08554 -15.71625 -15.49352 -15.13617 -14.99286 -14.88911 -14.50654 -14.26883 -13.92178 -13.90466 -13.77601 -13.51763 -13.08346 -13.00223 -12.91869 -12.89548 -12.75669 -12.63864 -12.54568 -12.40031 -11.95581 -11.76622 -11.69718 -11.56047 -11.47777 -11.35886 -11.23380 -11.20946 -11.08401 -10.73549 -10.54336 -10.39075 -10.28049 -9.38207 -8.19105 -6.30026 0.28957 1.23714 1.42699 1.43323 1.54491 2.08973 2.41673 2.53710 3.15057 3.18174 3.44042 3.64447 3.82956 3.93670 4.00125 4.08421 4.10404 4.18495 4.23551 4.27402 4.35565 4.44536 4.48735 4.51885 4.52851 4.63061 4.80774 4.84694 4.86631 4.91893 4.94136 4.95939 5.03542 5.12730 5.13845 5.15382 5.22867 5.26677 5.30297 5.34209 5.37251 5.42792 5.49884 5.52003 5.58747 5.71215 5.84855 5.86006 6.03580 6.23235 6.31030 6.41178 6.68330 6.86925 6.89184 7.39550 8.92830 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.042578 B = 0.001229 C = 0.001209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.457349 B =22781.690937 C =23148.848234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.964 3.036 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.262 1.262 7 C -0.543 4.543 8 H 0.064 0.936 9 C 0.025 3.975 10 C -0.106 4.106 11 C 0.127 3.873 12 N -0.686 5.686 13 C 0.502 3.498 14 O -0.548 6.548 15 C 0.515 3.485 16 O -0.540 6.540 17 N -0.687 5.687 18 C 0.122 3.878 19 C 0.056 3.944 20 N -0.689 5.689 21 C 0.098 3.902 22 C -0.143 4.143 23 C -0.116 4.116 24 C -0.117 4.117 25 C -0.119 4.119 26 C -0.113 4.113 27 C -0.106 4.106 28 H 0.263 0.737 29 H -0.004 1.004 30 H -0.003 1.003 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.419 0.581 36 H 0.420 0.580 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.049 0.951 41 H 0.348 0.652 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.064 0.936 52 H 0.067 0.933 53 H 0.060 0.940 54 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.959 -38.838 1.681 39.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.789 3.211 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.581 4.581 8 H 0.082 0.918 9 C -0.013 4.013 10 C -0.144 4.144 11 C 0.004 3.996 12 N -0.338 5.338 13 C 0.283 3.717 14 O -0.426 6.426 15 C 0.295 3.705 16 O -0.417 6.417 17 N -0.341 5.341 18 C -0.002 4.002 19 C -0.074 4.074 20 N -0.320 5.320 21 C -0.011 4.011 22 C -0.182 4.182 23 C -0.154 4.154 24 C -0.154 4.154 25 C -0.156 4.156 26 C -0.151 4.151 27 C -0.144 4.144 28 H 0.072 0.928 29 H 0.015 0.985 30 H 0.015 0.985 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.257 0.743 36 H 0.258 0.742 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.067 0.933 41 H 0.167 0.833 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.086 0.914 53 H 0.079 0.921 54 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 6.918 -38.718 0.995 39.344 hybrid contribution -0.361 1.128 0.935 1.509 sum 6.556 -37.590 1.930 38.207 Atomic orbital electron populations 1.70091 1.07815 1.27780 1.51660 1.25953 0.95710 1.03326 0.94742 0.85462 0.78706 0.78528 0.78441 1.19868 1.20929 1.18642 1.21686 0.93718 0.92163 1.50554 0.91794 1.18934 0.94347 0.92571 0.95440 1.21647 0.98643 0.91915 1.02230 1.21482 0.91585 0.84505 1.02036 1.45886 1.12282 1.04680 1.71001 1.20309 0.88484 0.84793 0.78161 1.90749 1.17015 1.85038 1.49791 1.19902 0.87919 0.84670 0.77988 1.90768 1.16702 1.85009 1.49197 1.45603 1.12417 1.04232 1.71810 1.21427 0.91484 0.83982 1.03260 1.22015 0.94456 0.88693 1.02212 1.60594 1.19385 1.01274 1.50750 1.20515 0.96833 0.88473 0.95328 1.22025 0.99565 0.99160 0.97412 1.21238 0.97700 0.94502 1.01933 1.21907 0.97555 0.96064 0.99901 1.21345 0.97916 1.00503 0.95842 1.21269 1.01061 0.95498 0.97273 1.20404 0.98618 0.94077 1.01295 0.92792 0.98525 0.98492 0.91462 0.91454 0.91692 0.91659 0.74333 0.74250 0.90847 0.90700 0.89893 0.93306 0.83323 0.91070 0.91202 0.92145 0.92136 0.92436 0.92163 0.92392 0.92078 0.92240 0.91745 0.91406 0.92107 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.14 16 2 C 0.00 0.03 5.46 84.65 0.46 0.49 16 3 Si 0.96 43.77 29.54 68.60 2.03 45.80 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.54 -30.24 9.11 25.60 0.23 -30.00 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.02 1.27 4.97 29.85 0.15 1.41 16 10 C -0.11 -4.08 5.27 30.60 0.16 -3.91 16 11 C 0.13 4.30 5.67 86.38 0.49 4.79 16 12 N -0.69 -19.84 5.55 -464.43 -2.58 -22.41 16 13 C 0.50 14.36 7.89 87.27 0.69 15.05 16 14 O -0.55 -17.91 16.48 -3.23 -0.05 -17.97 16 15 C 0.52 12.69 7.89 87.27 0.69 13.38 16 16 O -0.54 -15.44 16.48 -3.23 -0.05 -15.49 16 17 N -0.69 -12.20 5.55 -464.41 -2.58 -14.77 16 18 C 0.12 1.70 5.93 86.38 0.51 2.21 16 19 C 0.06 0.55 5.55 86.30 0.48 1.02 16 20 N -0.69 -6.57 6.15 -501.27 -3.08 -9.65 16 21 C 0.10 0.83 1.97 43.06 0.08 0.92 16 22 C -0.14 -1.09 4.92 30.20 0.15 -0.94 16 23 C -0.12 -0.89 5.31 30.14 0.16 -0.73 16 24 C -0.12 -0.84 5.85 31.31 0.18 -0.66 16 25 C -0.12 -0.83 5.31 30.14 0.16 -0.67 16 26 C -0.11 -0.83 5.61 30.19 0.17 -0.66 16 27 C -0.11 -0.91 4.77 28.74 0.14 -0.77 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 16 31 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 32 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 33 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.42 10.90 7.94 -92.71 -0.74 10.16 16 36 H 0.42 6.43 7.94 -92.70 -0.74 5.69 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 39 H 0.08 0.82 8.04 -2.39 -0.02 0.80 16 40 H 0.05 0.42 7.10 -2.38 -0.02 0.40 16 41 H 0.35 2.88 8.51 -89.69 -0.76 2.12 16 42 H 0.07 0.69 7.11 -2.39 -0.02 0.67 16 43 H 0.07 0.55 6.98 -2.38 -0.02 0.53 16 44 H 0.06 0.50 6.99 -2.39 -0.02 0.48 16 45 H 0.06 0.49 6.63 -2.39 -0.02 0.47 16 46 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 47 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 50 H 0.06 0.44 6.63 -2.39 -0.02 0.42 16 51 H 0.06 0.50 6.98 -2.39 -0.02 0.48 16 52 H 0.07 0.47 8.14 -2.38 -0.02 0.45 16 53 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 54 H 0.06 0.54 7.46 -2.39 -0.02 0.52 16 Total: -1.00 -66.91 424.20 -2.46 -69.37 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -1.33 Total: 20.35 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: 4.91 Total: 0.93 kcal Atomic # 7 Polarization: -95.03 SS G_CDS: -7.95 Total: -102.98 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.11 Total: -33.46 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -66.91 -2.46 -69.37 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000419652496.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.578 kcal (2) G-P(sol) polarization free energy of solvation -66.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds