Wall clock time and date at job start Sat Apr 11 2020 05:49:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 119.99700 * 2 1 4 4 H 1.48509 * 109.46970 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47305 * 299.99401 * 3 2 1 6 6 H 1.48495 * 109.47446 * 59.99795 * 3 2 1 7 7 C 1.37876 * 120.00145 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00022 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99971 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46925 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47008 * 179.97438 * 10 9 7 12 12 H 1.09003 * 109.46827 * 55.00465 * 11 10 9 13 13 N 1.46894 * 109.47089 * 295.00290 * 11 10 9 14 14 C 1.50703 * 109.47181 * 174.99934 * 11 10 9 15 15 O 1.21281 * 119.99837 * 99.99991 * 14 11 10 16 16 N 1.34781 * 120.00021 * 280.00354 * 14 11 10 17 17 C 1.46499 * 119.99786 * 180.02562 * 16 14 11 18 18 C 1.53000 * 109.46840 * 269.99584 * 17 16 14 19 19 C 1.52997 * 109.47060 * 180.02562 * 18 17 16 20 20 C 1.53001 * 109.47242 * 295.00551 * 19 18 17 21 21 C 1.52997 * 109.47242 * 179.97438 * 20 19 18 22 22 C 1.53006 * 109.47380 * 59.99720 * 21 20 19 23 23 C 1.53002 * 109.46654 * 300.00174 * 22 21 20 24 24 C 1.52994 * 109.47404 * 175.00005 * 19 18 17 25 25 C 1.46504 * 119.99832 * 359.97438 * 16 14 11 26 26 C 1.50695 * 109.47420 * 270.00196 * 25 16 14 27 27 N 1.34769 * 120.00022 * 180.02562 * 26 25 16 28 28 O 1.21285 * 119.99921 * 359.97438 * 26 25 16 29 29 H 0.96999 * 120.00519 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46896 * 60.00232 * 9 7 2 31 31 H 1.08998 * 109.46790 * 299.99838 * 9 7 2 32 32 H 1.09004 * 109.47410 * 60.00174 * 10 9 7 33 33 H 1.08999 * 109.47560 * 300.00364 * 10 9 7 34 34 H 1.00906 * 110.99722 * 176.04576 * 13 11 10 35 35 H 1.00900 * 110.99922 * 299.99449 * 13 11 10 36 36 H 1.09001 * 109.46813 * 149.99858 * 17 16 14 37 37 H 1.08992 * 109.47397 * 29.99919 * 17 16 14 38 38 H 1.09002 * 109.47398 * 300.00326 * 18 17 16 39 39 H 1.09001 * 109.47194 * 60.00507 * 18 17 16 40 40 H 1.09008 * 109.47017 * 55.00082 * 19 18 17 41 41 H 1.09008 * 109.46731 * 299.99706 * 20 19 18 42 42 H 1.08998 * 109.47430 * 59.99652 * 20 19 18 43 43 H 1.08998 * 109.46934 * 299.99660 * 21 20 19 44 44 H 1.09000 * 109.47325 * 179.97438 * 21 20 19 45 45 H 1.08992 * 109.47003 * 180.02562 * 22 21 20 46 46 H 1.08998 * 109.46692 * 59.99766 * 22 21 20 47 47 H 1.08995 * 109.46734 * 299.99283 * 23 22 21 48 48 H 1.09002 * 109.46264 * 180.02562 * 23 22 21 49 49 H 1.09000 * 109.47476 * 300.00087 * 24 19 18 50 50 H 1.09008 * 109.46970 * 60.00049 * 24 19 18 51 51 H 1.08999 * 109.47380 * 30.00717 * 25 16 14 52 52 H 1.09001 * 109.46721 * 150.00109 * 25 16 14 53 53 H 0.96997 * 120.00331 * 0.02562 * 27 26 25 54 54 H 0.97005 * 120.00299 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8903 2.3965 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4804 -4.9871 0.0012 12 1 0.7880 -5.0073 -0.8405 13 7 0.7290 -5.1181 1.2566 14 6 2.4550 -6.1299 -0.1227 15 8 2.7871 -6.7531 0.8633 16 7 2.9575 -6.4592 -1.3291 17 6 3.9045 -7.5705 -1.4495 18 6 5.3317 -7.0445 -1.2836 19 6 6.3207 -8.2049 -1.4100 20 6 6.1119 -9.1817 -0.2510 21 6 7.1005 -10.3424 -0.3777 22 6 8.5309 -9.8009 -0.3368 23 6 8.7397 -8.8242 -1.4959 24 6 7.7509 -7.6630 -1.3688 25 6 2.5559 -5.7066 -2.5202 26 6 1.3378 -6.3484 -3.1329 27 7 0.7877 -5.8240 -4.2458 28 8 0.8532 -7.3374 -2.6250 29 1 -0.4851 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8720 -3.6043 0.8905 33 1 2.8721 -3.6043 -0.8894 34 1 0.1647 -5.9546 1.2546 35 1 1.3491 -5.1022 2.0524 36 1 3.7994 -8.0326 -2.4312 37 1 3.6975 -8.3098 -0.6759 38 1 5.5387 -6.3052 -2.0573 39 1 5.4367 -6.5824 -0.3020 40 1 6.1553 -8.7221 -2.3552 41 1 6.2773 -8.6645 0.6943 42 1 5.0930 -9.5679 -0.2803 43 1 6.9346 -10.8594 -1.3228 44 1 6.9520 -11.0380 0.4482 45 1 9.2352 -10.6278 -0.4276 46 1 8.6968 -9.2839 0.6083 47 1 8.5739 -9.3412 -2.4410 48 1 9.7589 -8.4388 -1.4670 49 1 7.8997 -6.9672 -2.1945 50 1 7.9163 -7.1458 -0.4236 51 1 2.3230 -4.6794 -2.2396 52 1 3.3710 -5.7097 -3.2438 53 1 1.1759 -5.0337 -4.6527 54 1 0.0038 -6.2373 -4.6405 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424110536.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:49:23 Heat of formation + Delta-G solvation = -140.615824 kcal Electronic energy + Delta-G solvation = -31006.375852 eV Core-core repulsion = 26975.034695 eV Total energy + Delta-G solvation = -4031.341156 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 339.231 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.69503 -40.08846 -39.67389 -37.04822 -36.72014 -34.84941 -34.65296 -33.95658 -31.95163 -31.64798 -29.99013 -28.71128 -27.79717 -25.75437 -24.21626 -23.34212 -22.51059 -21.87358 -21.67519 -20.61673 -20.15465 -18.84223 -18.30422 -18.15774 -17.92653 -17.13646 -16.86907 -16.49227 -16.30806 -15.86033 -15.83036 -15.55815 -15.35103 -15.00765 -14.89014 -14.78505 -14.59602 -14.28753 -14.23206 -13.79980 -13.68995 -13.41376 -13.21746 -13.01084 -12.86453 -12.78783 -12.66721 -12.47580 -12.23960 -12.03466 -11.99374 -11.72618 -11.68547 -11.66302 -11.38608 -11.33005 -11.22699 -11.00699 -10.93326 -10.83288 -10.63955 -10.47559 -9.76194 -9.67117 -8.11171 -6.21405 1.42106 1.43863 1.46207 1.57344 1.57591 1.81833 2.46834 2.68101 3.22387 3.36788 3.60564 3.71335 3.77075 3.86436 4.01045 4.03301 4.04136 4.10299 4.18349 4.23985 4.32203 4.35451 4.46011 4.52392 4.55936 4.65111 4.67489 4.70844 4.74689 4.79663 4.90224 4.98592 5.05150 5.11625 5.20384 5.22466 5.27391 5.30308 5.34346 5.41780 5.46338 5.50443 5.60122 5.63067 5.84203 5.89332 5.99420 6.00767 6.19643 6.31438 6.42108 6.47167 6.97192 7.01228 7.33085 7.47082 9.00204 Molecular weight = 339.23amu Principal moments of inertia in cm(-1) A = 0.010347 B = 0.002840 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2705.387058 B = 9857.733381 C =11016.120541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.958 3.042 4 H -0.262 1.262 5 H -0.276 1.276 6 H -0.286 1.286 7 C -0.537 4.537 8 H 0.059 0.941 9 C 0.041 3.959 10 C -0.081 4.081 11 C 0.085 3.915 12 H 0.093 0.907 13 N -0.818 5.818 14 C 0.492 3.508 15 O -0.575 6.575 16 N -0.588 5.588 17 C 0.118 3.882 18 C -0.121 4.121 19 C -0.075 4.075 20 C -0.117 4.117 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.116 4.116 24 C -0.113 4.113 25 C 0.074 3.926 26 C 0.495 3.505 27 N -0.832 5.832 28 O -0.585 6.585 29 H 0.261 0.739 30 H -0.004 1.004 31 H 0.000 1.000 32 H 0.044 0.956 33 H 0.078 0.922 34 H 0.342 0.658 35 H 0.346 0.654 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.082 0.918 39 H 0.041 0.959 40 H 0.084 0.916 41 H 0.043 0.957 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.058 0.942 45 H 0.069 0.931 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.071 0.929 50 H 0.048 0.952 51 H 0.123 0.877 52 H 0.156 0.844 53 H 0.421 0.579 54 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.380 -17.366 -12.057 25.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.783 3.217 4 H -0.185 1.185 5 H -0.202 1.202 6 H -0.212 1.212 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.004 3.996 10 C -0.119 4.119 11 C -0.031 4.031 12 H 0.111 0.889 13 N -0.346 5.346 14 C 0.280 3.720 15 O -0.455 6.455 16 N -0.318 5.318 17 C -0.004 4.004 18 C -0.160 4.160 19 C -0.094 4.094 20 C -0.155 4.155 21 C -0.154 4.154 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.150 4.150 25 C -0.053 4.053 26 C 0.279 3.721 27 N -0.397 5.397 28 O -0.465 6.465 29 H 0.070 0.930 30 H 0.015 0.985 31 H 0.019 0.981 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.155 0.845 35 H 0.160 0.840 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.059 0.941 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.071 0.929 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.088 0.912 48 H 0.085 0.915 49 H 0.090 0.910 50 H 0.067 0.933 51 H 0.140 0.860 52 H 0.174 0.826 53 H 0.252 0.748 54 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 13.893 -17.502 -11.294 25.038 hybrid contribution 0.076 0.232 0.225 0.332 sum 13.969 -17.270 -11.069 24.817 Atomic orbital electron populations 1.70118 1.07689 1.27385 1.51897 1.25879 0.95609 1.02960 0.95059 0.85507 0.79229 0.79373 0.77554 1.18545 1.20204 1.21224 1.21720 0.93427 0.92344 1.50065 0.92248 1.18810 0.93752 0.91294 0.95733 1.21471 0.97757 0.91423 1.01298 1.21643 0.93570 0.92885 0.94976 0.88945 1.58997 1.27182 1.45040 1.03383 1.22334 0.81308 0.85452 0.82934 1.90618 1.61795 1.55185 1.37887 1.47615 1.44152 1.33876 1.06198 1.21603 0.87892 0.88176 1.02737 1.21933 0.93326 0.98805 1.01893 1.21055 0.94394 0.94929 0.99061 1.21618 0.98924 0.96754 0.98161 1.21523 0.94785 0.97071 1.02056 1.21551 0.96460 0.99096 0.98698 1.21526 0.98954 0.96126 0.98748 1.21574 0.93749 0.97953 1.01767 1.21953 0.97188 0.96981 0.89132 1.21475 0.85972 0.83759 0.80903 1.43693 1.33924 1.33784 1.28282 1.90760 1.64567 1.28126 1.63017 0.93018 0.98546 0.98108 0.93711 0.90370 0.84538 0.84019 0.89007 0.92088 0.89920 0.94057 0.89763 0.93814 0.92937 0.91243 0.92340 0.91204 0.92970 0.91211 0.91488 0.90989 0.93276 0.85957 0.82634 0.74780 0.76048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.53 13.29 21.45 0.28 -55.25 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 43.04 29.54 68.60 2.03 45.06 16 4 H -0.26 -11.13 7.11 99.48 0.71 -10.43 16 5 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 6 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 7 C -0.54 -29.30 9.11 25.60 0.23 -29.07 16 8 H 0.06 3.10 7.74 -2.91 -0.02 3.07 16 9 C 0.04 2.09 4.86 29.85 0.15 2.23 16 10 C -0.08 -3.20 4.45 30.59 0.14 -3.06 16 11 C 0.09 3.04 2.31 44.17 0.10 3.14 16 12 H 0.09 3.28 6.77 -2.39 -0.02 3.26 16 13 N -0.82 -30.46 8.44 -171.80 -1.45 -31.91 16 14 C 0.49 16.76 6.91 87.66 0.61 17.37 16 15 O -0.58 -22.82 15.83 -3.03 -0.05 -22.87 16 16 N -0.59 -15.47 1.96 -826.16 -1.62 -17.09 16 17 C 0.12 2.72 5.16 86.38 0.45 3.17 16 18 C -0.12 -2.40 5.01 30.59 0.15 -2.24 16 19 C -0.08 -1.24 2.19 -10.80 -0.02 -1.26 16 20 C -0.12 -2.25 4.96 30.59 0.15 -2.09 16 21 C -0.12 -1.80 5.92 30.60 0.18 -1.62 16 22 C -0.12 -1.67 5.92 30.60 0.18 -1.49 16 23 C -0.12 -1.47 5.92 30.61 0.18 -1.29 16 24 C -0.11 -1.69 5.21 30.61 0.16 -1.53 16 25 C 0.07 1.44 5.46 85.63 0.47 1.91 16 26 C 0.50 11.02 7.65 87.66 0.67 11.69 16 27 N -0.83 -11.51 8.87 -173.54 -1.54 -13.05 16 28 O -0.58 -18.85 17.27 -3.04 -0.05 -18.90 16 29 H 0.26 14.68 8.31 -92.71 -0.77 13.91 16 30 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.00 0.03 7.75 -2.39 -0.02 0.01 16 32 H 0.04 1.86 8.14 -2.38 -0.02 1.84 16 33 H 0.08 2.66 6.43 -2.39 -0.02 2.64 16 34 H 0.34 11.77 9.06 -89.69 -0.81 10.96 16 35 H 0.35 12.93 8.58 -89.69 -0.77 12.16 16 36 H 0.09 1.72 8.07 -2.39 -0.02 1.71 16 37 H 0.06 1.74 5.85 -2.39 -0.01 1.72 16 38 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.08 1.16 8.14 -2.38 -0.02 1.15 16 41 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 42 H 0.05 1.12 6.57 -2.39 -0.02 1.10 16 43 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 48 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 51 H 0.12 2.55 4.83 -2.39 -0.01 2.54 16 52 H 0.16 1.61 8.07 -2.39 -0.02 1.59 16 53 H 0.42 3.16 8.83 -92.71 -0.82 2.34 16 54 H 0.41 5.15 8.93 -92.70 -0.83 4.33 16 Total: -1.00 -76.82 422.80 -0.45 -77.27 By element: Atomic # 1 Polarization: 42.59 SS G_CDS: -2.30 Total: 40.28 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: 4.25 Total: -3.55 kcal Atomic # 7 Polarization: -112.97 SS G_CDS: -4.33 Total: -117.30 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: -0.10 Total: -41.78 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Total: -76.82 -0.45 -77.27 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424110536.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.344 kcal (2) G-P(sol) polarization free energy of solvation -76.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds